View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14399_low_23 (Length: 255)
Name: NF14399_low_23
Description: NF14399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14399_low_23 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 36442263 - 36442517
Alignment:
| Q |
1 |
catgctgataggttctcctccaaattgccttggaaggaaacactttctttcccttttcatgataataatgtctttgagccttctgtcactatctactttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36442263 |
catgctgataggttctcctccaaattgccttggaaggaaacactttctttcccttttcatgataataatgtctttgagccttctgtcactaactactttg |
36442362 |
T |
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| Q |
101 |
actccaccttgggagaagactttcaacaaactgggtaagactataatataaattaatttattgtgctttatatatttgtgtcccaagttttttattttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36442363 |
actccaccttgggagaagactttcaacaaactgggtaagactataatataaattaatttattgtgctttatatatttgtgtcccaagttttttattttat |
36442462 |
T |
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| Q |
201 |
gaagnnnnnnntaatttattttattcaaatatatcatgaaataaaagtcataaaa |
255 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36442463 |
gaagaaaaaaataatttattttattcaaatatatcatgaaataaaagtcataaaa |
36442517 |
T |
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