View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14399_low_25 (Length: 239)
Name: NF14399_low_25
Description: NF14399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14399_low_25 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 42926478 - 42926251
Alignment:
| Q |
1 |
agtttttacaacaattcatgattatcaaactgaggcgttgatagttgtcatcgaaggtgagggagagaaggctgaagaaaaccatcgttgggaaaattac |
100 |
Q |
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| T |
42926478 |
agtttttacaacaattcatgattatcaaactgaggcgttgatagttgtcatcgaaggtgagggagagaaggctaaagaaacccatcgtt----------- |
42926390 |
T |
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| Q |
101 |
ataataactgaaatacctgcagcaccaaaaggagttccagaaatcactgtttgcttggcgatagaccatgaaaactggctcacagttattgcatcggtta |
200 |
Q |
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| T |
42926389 |
ataataactgaaatacctgcagcaccaaaaggagttccagaaatcactgtttgcttggcgatagaccatgaaaactggctcacagttattgcgtcggtta |
42926290 |
T |
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| Q |
201 |
ggatgcatggtgaacaatattatgatattcctgttactc |
239 |
Q |
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| T |
42926289 |
ggatgcatggtgaacaatattatgatattcctgttactc |
42926251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 47843450 - 47843586
Alignment:
| Q |
8 |
acaacaattcatgattatcaaactgaggcgttgatagttgtcatcgaaggtgagggagagaaggctgaagaaaaccatcgttgggaaaattacataataa |
107 |
Q |
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| T |
47843450 |
acaactattcatgataatcaaactgaggcattgatccttgtctacgaaggtgagggacagaaggctgaagaaaaccaccttttgggatatttgaaaataa |
47843549 |
T |
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| Q |
108 |
ctgaaatacctgcagcaccaaaaggagttccagaaat |
144 |
Q |
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| T |
47843550 |
tgggaatacctgcagcaccaagaggagttccagaaat |
47843586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 206
Target Start/End: Complemental strand, 47844943 - 47844789
Alignment:
| Q |
52 |
cgaaggtgagggagagaaggctgaagaaaaccatcgttgggaaaattacataataactgaaatacctgcagcaccaaaaggagttccagaaatcactgtt |
151 |
Q |
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| T |
47844943 |
cgaaggtgaggcacagaaggttgaagagaatcaccttttgggatatttcaaaataactgaaatacctgaagcaccaaaaggagctcctgaaatcaatgtg |
47844844 |
T |
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| Q |
152 |
tgcttggcgatagaccatgaaaactggctcacagttattgcatcggttaggatgc |
206 |
Q |
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| T |
47844843 |
agcatggacatagaccataaaaacaggttgacagttattgcttctgttgggatgc |
47844789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 44727484 - 44727355
Alignment:
| Q |
3 |
tttttacaacaattcatgattatcaaactgaggcgttgatagttgtcatcgaaggtgagggagagaaggctgaagaaaaccatcgttgggaaaattacat |
102 |
Q |
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| T |
44727484 |
ttttgacaactattcatgataatcaaactgcggcattgatcgttgtttacgaaggtgagggacagaaggttgaagaaaaccaacttttaggatatttcaa |
44727385 |
T |
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| Q |
103 |
aataactgaaatacctgcagcaccaaaagg |
132 |
Q |
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| T |
44727384 |
actaactgaaatacctaaagcaccaaaagg |
44727355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 47878987 - 47878953
Alignment:
| Q |
112 |
aatacctgcagcaccaaaaggagttccagaaatca |
146 |
Q |
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| T |
47878987 |
aatacctgcagcaccaaaaggagttccagatatca |
47878953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 808590 - 808733
Alignment:
| Q |
3 |
tttttacaacaattcatgattatcaaactgaggcgttgatagttgtcatcgaaggtgagggagagaaggctgaagaaaacca-tcgttgggaaaattaca |
101 |
Q |
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| T |
808590 |
ttttcacaactattcatgataatcaaactgaggcattgatacttgtgtacgaaggtgagggaaagaaggcagaagaaaaccacttgttagg-atatttca |
808688 |
T |
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| Q |
102 |
taataactgaaatacctgcagcaccaaaaggagttccagaaatca |
146 |
Q |
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| T |
808689 |
agataatgggaatacctgcagcaccaaaaggagttcctgaaatca |
808733 |
T |
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