View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14399_low_27 (Length: 218)
Name: NF14399_low_27
Description: NF14399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14399_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 8524833 - 8525018
Alignment:
| Q |
13 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |
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| T |
8524833 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaaaac |
8524932 |
T |
|
| Q |
113 |
ccaccaaactttgaatgaaaataagagccagagaaattattgttagaaagattgagtttttgaatataagcaagatggaaaagggt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
8524933 |
ccaccaaactttgaatgaaaataagagccagagaaatcattgttagcaaggttgagtttttgaatataagcaagatggaaaagggt |
8525018 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 9e-63; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 42125378 - 42125563
Alignment:
| Q |
13 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac |
112 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
42125378 |
gagatgaagtgattgtaatttggaaaggtgtgagatttgaattggaatttcacctttaaagaaactacgagacaagtcaagatgtgcaagactcataaac |
42125477 |
T |
|
| Q |
113 |
ccaccaaactttgaatgaaaataagagccagagaaattattgttagaaagattgagtttttgaatataagcaagatggaaaagggt |
198 |
Q |
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||||||||||| |||||||||| |||| |||||||| |||||||||||| |||||| |||||| || | |||||| ||||||||| |
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| T |
42125478 |
ccaccaaacttagaatgaaaatgagagtaagagaaatcattgttagaaaggttgagtgtttgaagatgaacaagattgaaaagggt |
42125563 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 41712011 - 41711829
Alignment:
| Q |
13 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac |
112 |
Q |
| |
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|||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |||| ||||| ||||| ||||||||||| |||||||||||| |
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| T |
41712011 |
gagatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaaaac |
41711912 |
T |
|
| Q |
113 |
ccaccaaactttgaatgaaaataagagccagagaaattattgttagaaagattgagtttttgaatataagcaagatggaaaag |
195 |
Q |
| |
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| ||||||||| |||||||||| ||| |||||||| ||||| |||||| |||||| |||| | || | ||||||||||||| |
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| T |
41711911 |
cgaccaaacttagaatgaaaatgggagtaagagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatggaaaag |
41711829 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 42118787 - 42118918
Alignment:
| Q |
24 |
attgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaa-ctacgagacaagtcaagatgtgtgagactcaaaaacccaccaaact |
122 |
Q |
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||||||||||| | | ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
42118787 |
attgtaatttggataagtgtgagatttgagttggaatttcacctttaaagaaaactatgagacaagtcaagatgtgtaagactcaaaaaaccaccaaact |
42118886 |
T |
|
| Q |
123 |
ttgaatgaaaataagagccagagaaattattg |
154 |
Q |
| |
|
| ||||||||| ||| | |||||||||||| |
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| T |
42118887 |
tagaatgaaaacgagaagcggagaaattattg |
42118918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 42130603 - 42130788
Alignment:
| Q |
13 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac |
112 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |||||| ||| |
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| T |
42130603 |
gagatgaagtgattgtaatttggataggtgagagatttgagttggaatttcaccttctaagttactatcagacaagtcaagatgtgtaagactctgaaat |
42130702 |
T |
|
| Q |
113 |
ccaccaaactttgaatgaaaataagagccagagaaattattgttagaaagattgagtttttgaatataagcaagatggaaaagggt |
198 |
Q |
| |
|
|||| |||||| ||||||||| |||| || |||||| ||||| |||||| |||||| |||| | || | ||||||| |||||||| |
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| T |
42130703 |
ccacaaaacttataatgaaaatgagagtcaaagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatgaaaaagggt |
42130788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 34231038 - 34230903
Alignment:
| Q |
14 |
agatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacc |
113 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||| ||||||||| ||| |||||||| | ||||||||| |||||||| ||||||| ||||| |
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| T |
34231038 |
agatgaagtgattgtaatttggaaaggtccgagatttgagaaggaatttcatcttgaaagaaacaagaagacaagtcgagatgtgtaagactcataaacc |
34230939 |
T |
|
| Q |
114 |
caccaaactttgaatgaaaataagagccagagaaat |
149 |
Q |
| |
|
| |||||||| |||||||||| ||||||||||||| |
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| T |
34230938 |
cgccaaacttagaatgaaaatgggagccagagaaat |
34230903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 34239081 - 34238921
Alignment:
| Q |
14 |
agatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacc |
113 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||| ||||||||||| || | || |||||||||||||||||| |||||| ||||| |
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| T |
34239081 |
agatgaagtgattgtaatttggaaaggtatgagatttgagaaggaatttcaccgccaacatgagtattagacaagtcaagatgtgtaagactcgtaaacc |
34238982 |
T |
|
| Q |
114 |
caccaaactttgaatgaaaataagagccagagaaattattgttagaaagattgagtttttg |
174 |
Q |
| |
|
|||||||| |||| |||||| || ||| ||||| |||||||||||| |||||| |||| |
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|
| T |
34238981 |
tgccaaacttagaatcaaaataggaaccatagaaaccattgttagaaaggttgagtgtttg |
34238921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 25521246 - 25521065
Alignment:
| Q |
14 |
agatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacc |
113 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |||||| ||||| |
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|
| T |
25521246 |
agatgaagtgattgtaatttggaaaggtgtgagatttgagttggaattttacctttaaagaaactaccagacaagtaaagatgtgtaagactctgaaacc |
25521147 |
T |
|
| Q |
114 |
caccaaactttgaatgaaaataagagccagagaaattattgttagaaagattgagtttttgaatataagcaagatggaaaag |
195 |
Q |
| |
|
|||||||||| | |||||||| ||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||||||||| |
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|
| T |
25521146 |
caccaaacttagcatgaaaatgggagccagtgaaatcattgtaagaaaggttgagtttttgaatatgagcaagatggaaaag |
25521065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 12250199 - 12250384
Alignment:
| Q |
13 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac |
112 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| | || || |
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|
| T |
12250199 |
gagatgaagtgattctaatttggaaaggtgtgagatttgagttggaacttcacctttaaagaaactattagacaagtcaagatgtgtaagattaaagaat |
12250298 |
T |
|
| Q |
113 |
ccaccaaactttgaatgaaaataagagccagagaaattattgttagaaagattgagtttttgaatataagcaagatggaaaagggt |
198 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||||| |||| |||||| |||||| |||| | || |||||||| ||||||||| |
|
|
| T |
12250299 |
ccaccaaacttagaatgaaaatgggagtttgagaaatcattggaagaaaggttgagtgtttggagatgagcaagatcgaaaagggt |
12250384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 11120152 - 11120337
Alignment:
| Q |
13 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac |
112 |
Q |
| |
|
||||| ||| |||||||||||| |||| | |||||||||||||||||||||||| | || | |||| |||||||| ||||||||| |||||| |||| |
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|
| T |
11120152 |
gagataaagggattgtaatttggaaagatatgagatttgagttggaatttcaccataaatgttactataagacaagtaaagatgtgtaagactctgaaac |
11120251 |
T |
|
| Q |
113 |
ccaccaaactttgaatgaaaataagagccagagaaattattgttagaaagattgagtttttgaatataagcaagatggaaaagggt |
198 |
Q |
| |
|
||||||||||| ||||||||| |||||| ||||||||||||| ||| |||||| |||| | || | |||||||||||||||| |
|
|
| T |
11120252 |
ccaccaaacttagaatgaaaacgagagccggagaaattattgtatacaaggttgagtgtttggagatgaacaagatggaaaagggt |
11120337 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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