View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14399_low_5 (Length: 596)
Name: NF14399_low_5
Description: NF14399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14399_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 211 - 458
Target Start/End: Original strand, 48550069 - 48550316
Alignment:
| Q |
211 |
aaagtacacgtgtcacctctctattctaaacatcatttaatgtgatctcatttaatgttatgaaatgatccattcttaatgttattcatgtaaccgaaag |
310 |
Q |
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| T |
48550069 |
aaagtacaagtgtcacctctctattctaaacatcatttaatgtgatctcatttaatgttatgaaatgatccattcttaatgttattcatgtaaccgaaaa |
48550168 |
T |
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| Q |
311 |
tattaatttgtctttattaagaagattctaagccaatgtaatatccatgtaactcaaaaaagtgatgatacaacaactttctaattggctgaaggtgtta |
410 |
Q |
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| T |
48550169 |
tattaatttgtctttattaagaagattataagccaatgtaatatccatgtaactcaaaaaagttatgatacaacaactttctaattggatgaaggtgtta |
48550268 |
T |
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| Q |
411 |
atcacgtcattaaaaagagttcctccaatggttgtttaacatgtgtca |
458 |
Q |
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| T |
48550269 |
atcacgtcattaaaaagagttcctccaatggttgtttaacatgtgtca |
48550316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 293 - 440
Target Start/End: Original strand, 42722944 - 42723090
Alignment:
| Q |
293 |
tattcatgtaaccgaaagtattaatttgtctttattaagaagattctaagccaatgtaatatccatgtaactcaaaaaagtgatgatacaacaac-tttc |
391 |
Q |
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| T |
42722944 |
tattcatgtaactaaaagtattactttgcctttactaagaagattttaagccaatgtaatattcatttaa--ccgaaaactgatgatacatcaacttttt |
42723041 |
T |
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| Q |
392 |
taattggctgaaggtgttaatcacgtcattaaaaagagttcctccaatg |
440 |
Q |
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| T |
42723042 |
taattgactgaaggtgtcaatcatgtcattaaaaagaattcctctaatg |
42723090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 42720552 - 42720613
Alignment:
| Q |
210 |
caaagtacacgtgtcacctctctattctaaacatcatttaatgtgatctcatttaatgttat |
271 |
Q |
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| T |
42720552 |
caaagtacacaggtcaactttctactctaagcatcatttaatgagatatcatttaatgttat |
42720613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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