View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14399_low_8 (Length: 504)

Name: NF14399_low_8
Description: NF14399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14399_low_8
NF14399_low_8
[»] chr1 (1 HSPs)
chr1 (60-488)||(6257000-6257441)
[»] chr8 (3 HSPs)
chr8 (55-105)||(44254294-44254344)
chr8 (62-112)||(13654816-13654866)
chr8 (62-112)||(13713458-13713508)
[»] chr4 (1 HSPs)
chr4 (49-111)||(23226681-23226743)
[»] scaffold0118 (1 HSPs)
scaffold0118 (49-94)||(37304-37349)
[»] chr6 (1 HSPs)
chr6 (60-107)||(34675793-34675840)
[»] chr2 (2 HSPs)
chr2 (49-92)||(37065410-37065453)
chr2 (50-106)||(30737043-30737099)
[»] chr7 (1 HSPs)
chr7 (60-96)||(32962886-32962922)


Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 60 - 488
Target Start/End: Original strand, 6257000 - 6257441
Alignment:
Q  60 tagtggctaaaattcacattttttaaagtgaataaataggatgtccggtgtttaaattctaatccctgcatataat------------gctaaaagaaaa 147  Q
    ||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||            ||||||||||||    
T  6257000 tagtggctagaattcacattttttaaagtggataaataggatatccggtgtttaaactctaatccctgcatataataatgcatgtcttgctaaaagaaaa 6257099  T
Q  148 tactaattggaatcatatgctattcagtttttgtggcttctttcagctaaaatcataaaatccggcaaagattgaagtaatgatgatatttcaagtgcag 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6257100 tactaattggaatcatatgctattcagtttttgtggcttctttcagctaaaatcataaaatccggcaaagattgaagtaatgatgatatttcaagtgcag 6257199  T
Q  248 acaaagaccaatactaaggtcaagatgaaggtgcaccatatacatactttacttattgacccgacacctctgccagctaacttagtgaagtatcattctc 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6257200 acaaagaccaatactaaggtcaagatgaaggtgcaccatatacatactttacttattgacccgacacctctgccagctaacttagtgaagtatcattctc 6257299  T
Q  348 aactcttgtttggatttagtgaaaatggagaatgagatggaatggaagaaaatatctccactttctctggacttattcaggttattgaaatgtcaac-nn 446  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||       
T  6257300 aactcttgtttggattcagtgaaaatggagaatgagatggaatggaagaaaatatctccactttctctggacttattcaggtgattgaaatgtcaacaaa 6257399  T
Q  447 nnnnnnntcatggtaaagtgagtaagaaaaaattgtgtaaaa 488  Q
           |||||||||||||||||||||||||||||||||||    
T  6257400 aaaaaaatcatggtaaagtgagtaagaaaaaattgtgtaaaa 6257441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 44254294 - 44254344
Alignment:
Q  55 tagcatagtggctaaaattcacattttttaaagtgaataaataggatgtcc 105  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  44254294 tagcatagtggctaaaattcacatttttcaaggtgaataagtaggatgtcc 44254344  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 13654816 - 13654866
Alignment:
Q  62 gtggctaaaattcacattttttaaagtgaataaataggatgtccggtgttt 112  Q
    |||| |||||||||||||||||||||||||||| | || ||||||| ||||    
T  13654816 gtggttaaaattcacattttttaaagtgaataagtggggtgtccggagttt 13654866  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 13713458 - 13713508
Alignment:
Q  62 gtggctaaaattcacattttttaaagtgaataaataggatgtccggtgttt 112  Q
    |||| |||||||||||||||||||||||||||| | || ||||||| ||||    
T  13713458 gtggttaaaattcacattttttaaagtgaataagtggggtgtccggagttt 13713508  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 23226681 - 23226743
Alignment:
Q  49 gtcaaatagcatagtggctaaaattcacattttttaaagtgaataaataggatgtccggtgtt 111  Q
    ||||| ||| |||||||||| |||||||||||||||| |||||||| |  |||||||||||||    
T  23226681 gtcaagtagtatagtggctataattcacattttttaaggtgaataagtgagatgtccggtgtt 23226743  T

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Target: scaffold0118 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 37304 - 37349
Alignment:
Q  49 gtcaaatagcatagtggctaaaattcacattttttaaagtgaataa 94  Q
    |||||||||| ||||||||||| |||||||||||||| ||||||||    
T  37304 gtcaaatagcctagtggctaaatttcacattttttaaggtgaataa 37349  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 34675793 - 34675840
Alignment:
Q  60 tagtggctaaaattcacattttttaaagtgaataaataggatgtccgg 107  Q
    ||||||||| ||||||||||||||||||||||||| | || |||||||    
T  34675793 tagtggctagaattcacattttttaaagtgaataactggggtgtccgg 34675840  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 37065410 - 37065453
Alignment:
Q  49 gtcaaatagcatagtggctaaaattcacattttttaaagtgaat 92  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||    
T  37065410 gtcaaatagcataatggttaaaattcacattttttaaggtgaat 37065453  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 30737099 - 30737043
Alignment:
Q  50 tcaaatagcatagtggctaaaattcacattttttaaagtgaataaataggatgtccg 106  Q
    |||| |||| ||||| ||| |||||||||||||||| |||||||| | |||||||||    
T  30737099 tcaagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 30737043  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 32962886 - 32962922
Alignment:
Q  60 tagtggctaaaattcacattttttaaagtgaataaat 96  Q
    ||||||||||||||||||||||| || ||||||||||    
T  32962886 tagtggctaaaattcacatttttcaaggtgaataaat 32962922  T

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