View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14399_low_9 (Length: 445)
Name: NF14399_low_9
Description: NF14399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14399_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 30325854 - 30325419
Alignment:
| Q |
1 |
tgttctagagatggaggaaaaggggaaagagagaggttaatggggttttctgggttgttgaagcattcacggaaggtgagtaatcggaggtagttgaaag |
100 |
Q |
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| T |
30325854 |
tgttctagagatggagggaaaggggaaagagagaggttaatggggttttctgggttgttgaagcattcacggaaggtgagtaatcggaggtagttgaaag |
30325755 |
T |
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| Q |
101 |
gggtgaagagaagtgggttgagagtggcattatgggaagaacatggtagtagggttggtctttcatcaaaaacgtagttgccaaagtgaagttgttcaat |
200 |
Q |
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| T |
30325754 |
gggtgaagagaagtgggttgagagtggcattatgggaagaacatggtagtagggttggtctttcatcaaaaacgtagttgccaaagtgaagttgttcaat |
30325655 |
T |
|
| Q |
201 |
gtgtgatttaaatttgcgatactgaagaaaatgaaagtaggagtaacggcaaacaatgccgggtggtgggaagcgacagaggtcgccggggaagcgagtg |
300 |
Q |
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| T |
30325654 |
gtgtgatttaaatttgcgatactgaagaaaatgaaagtaggagtaacggcaaacaatgccgggtggtgggaagcgacagaggtcgccggggaagcgagtg |
30325555 |
T |
|
| Q |
301 |
gtccatgggaaatctgggttgatggagttgagaacattgtagagtgctttttgttcagttggatgaatgggtggtttgtaattccagagaaggatgaatg |
400 |
Q |
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| T |
30325554 |
gtccatgggaaatctgggttgatggagttgagaacattgtagagtgctttttgttcggttgggtgtatgggtggtttgtaattccagagaaggatgaatg |
30325455 |
T |
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| Q |
401 |
ttaagaaaatgtatgagaaagccagcattattagtg |
436 |
Q |
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| T |
30325454 |
ttaagaaaatgtatgagaaagccagcattattagtg |
30325419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 213 - 436
Target Start/End: Complemental strand, 30337279 - 30337056
Alignment:
| Q |
213 |
tttgcgatactgaagaaaatgaaagtaggagtaacggcaaacaatgccgggtggtgggaagcgacagaggtcgccggggaagcgagtggtccatgggaaa |
312 |
Q |
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| T |
30337279 |
tttgcgatacttaagaagatgaaagtaggagtaacggcaaacaacgccgggtgggggtaagcgacagaggtcgccggagaagcgagttgtccatgggaaa |
30337180 |
T |
|
| Q |
313 |
tctgggttgatggagttgagaacattgtagagtgctttttgttcagttggatgaatgggtggtttgtaattccagagaaggatgaatgttaagaaaatgt |
412 |
Q |
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| T |
30337179 |
tctgggttgatggagttgagaacattgtagagtgctttttgttcagttgggtgtatgggtggtttgtaattccagagaaagatggatgataagcaaatgt |
30337080 |
T |
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| Q |
413 |
atgagaaagccagcattattagtg |
436 |
Q |
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| T |
30337079 |
atgagaaagcaagtattatcagtg |
30337056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 30343383 - 30343430
Alignment:
| Q |
315 |
tgggttgatggagttgagaacattgtagagtgctttttgttcagttgg |
362 |
Q |
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| T |
30343383 |
tgggttgagggagttgagaacattgtagagtgctttttgttctgttgg |
30343430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 30337439 - 30337381
Alignment:
| Q |
53 |
ggttgttgaagcattcacggaaggtgagtaatcggaggtagttgaaaggggtgaagaga |
111 |
Q |
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| T |
30337439 |
ggttgttgaagcattcacggaagatgagttttccaaggtagttgaaaggggtgaaaaga |
30337381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 30333040 - 30332972
Alignment:
| Q |
54 |
gttgttgaagcattcacggaaggtgagtaatcggaggtagttgaaaggggtgaagagaagtgggttgag |
122 |
Q |
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| T |
30333040 |
gttgttgaagcatttgtggaatgtgagtttgcggaggtagttgaaaggggttaagagtattgggttgag |
30332972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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