View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1439_high_12 (Length: 280)
Name: NF1439_high_12
Description: NF1439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1439_high_12 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 47366592 - 47366841
Alignment:
| Q |
19 |
gtagcatcgtatacaagaccaggatcaagagcagctactggatccacatgcccggaaccataatctaacggtgtagcaggtatcccagtagcaacatctt |
118 |
Q |
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| T |
47366592 |
gtagcatcgtatacaagaccaggatcaagagcagctactggatccacatgcccggaaccataatccaacggtgtagcaggtatcccagtagcaacatctt |
47366691 |
T |
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| Q |
119 |
ttatggtttgcccatttttgtacgtgccataagacgtggtcatgagtgcggatcttatagctgcaggactccattcaggatgggctcccttaagaagagc |
218 |
Q |
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| T |
47366692 |
ttatggtttgcccatttttgtacgtgccataagacgtggtcatgagtgcggatcttatagctgcaggactccattcaggatgggctcccttaagaagagc |
47366791 |
T |
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| Q |
219 |
agctaacccacttacatgggggcatgacatggatgtgccagagatgatgt |
268 |
Q |
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| T |
47366792 |
agctaacccacttacatgggggcatgacatggatgtgccagagatgatgt |
47366841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 5375970 - 5375859
Alignment:
| Q |
31 |
acaagaccaggatcaagagcagctactggatccacatgcccggaaccataatctaacggtgtagcaggtatcccagtagcaacatcttttatggtttgcc |
130 |
Q |
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| T |
5375970 |
acaagaccaggatcaagggcagatacaggatccacgtgtccggatccaaaatcaaagggagtagccggtttcccggttgcaacatctacaattgtttgtc |
5375871 |
T |
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| Q |
131 |
catttttgtacg |
142 |
Q |
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| T |
5375870 |
catttttgtacg |
5375859 |
T |
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Target: scaffold0047 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 68213 - 68165
Alignment:
| Q |
220 |
gctaacccacttacatgggggcatgacatggatgtgccagagatgatgt |
268 |
Q |
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| T |
68213 |
gctaatccacttacatgagggcatgacatggatgtgcctgagataatgt |
68165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 5725682 - 5725730
Alignment:
| Q |
220 |
gctaacccacttacatgggggcatgacatggatgtgccagagatgatgt |
268 |
Q |
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| T |
5725682 |
gctaatccacttgcatgagggcatgacatggatgtgcctgagataatgt |
5725730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 39738456 - 39738508
Alignment:
| Q |
216 |
agcagctaacccacttacatgggggcatgacatggatgtgccagagatgatgt |
268 |
Q |
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| T |
39738456 |
agcagctaaaccactcacatgagggcaggacatggatgttccagagataatgt |
39738508 |
T |
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