View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1439_high_13 (Length: 258)
Name: NF1439_high_13
Description: NF1439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1439_high_13 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 65 - 258
Target Start/End: Original strand, 40290797 - 40290990
Alignment:
| Q |
65 |
aatgttgtacttacatcaaatgtaccaagtttctgtattatttctcttttcctgttaatcattttgctgtttgctctttcaggccaacttctggtggagc |
164 |
Q |
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| T |
40290797 |
aatgttgtacttacatcaaatgtaccaagtttctgtattatttctcttttcctgttgatcattttgctgtttgctctttcaggccaacttctggtggagc |
40290896 |
T |
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| Q |
165 |
tgctcctgcacctacaaaatagaaaccattcaaacaacacatgcctggttatgcagaagagaatttattttgacagacaaataatgttaggttt |
258 |
Q |
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| T |
40290897 |
tgctcctgcacctacaaaatagaaaccattcaaacaacacatgcctggttatgcagaagagaatttattttgacagacaaataatgttaggttt |
40290990 |
T |
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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 40290693 - 40290747
Alignment:
| Q |
11 |
cagagacctatctagtgttcgtgtatgcgtcttgagacccgtagccttcatcata |
65 |
Q |
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| T |
40290693 |
cagagacctatctagtgttcgtgtatgtgtcttgagacccgtagccttcatcata |
40290747 |
T |
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