View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1439_high_22 (Length: 237)
Name: NF1439_high_22
Description: NF1439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1439_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 41147817 - 41147614
Alignment:
| Q |
15 |
cactcattgtccattgggattatgaaatgttaacttctctttgattcaaaatggtcactccaacctaacaatcaccaaccaaacctcatgtacttggaaa |
114 |
Q |
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| T |
41147817 |
cactcattgtccattgggattatgaaatgttaacttctctttgattcaaaatggtccctccaacctaacaatcaccaaccaaacctcatgtactttgaaa |
41147718 |
T |
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| Q |
115 |
tatcaacaaaaaccattttaatttctaaaattagtaagaaacccaaaaaagtcttaataacaaaaactgatttagaaagaagtaatacaaattagggtct |
214 |
Q |
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| T |
41147717 |
tatcaacaaaaaccattttaatttaaaaaattagtaagaaacccaaaaaagtcttaataacaaaaactgatttagaaagaagcaatacaaattagggtct |
41147618 |
T |
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| Q |
215 |
tgct |
218 |
Q |
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|||| |
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| T |
41147617 |
tgct |
41147614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 11645639 - 11645732
Alignment:
| Q |
113 |
aatatcaacaaaaacc-attttaatttctaaaattagtaagaaacccaaaaaagtcttaataacaaaaactgatttagaaagaagtaatacaaatta |
208 |
Q |
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| T |
11645639 |
aatatcaacaaaatcccattttaatttttaaa-ttagtatgaaaaccataa--gtcttaataacaaaaactgttttagaaagaaataatccaaatta |
11645732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 33184875 - 33184939
Alignment:
| Q |
24 |
tccattgggattatgaaatgttaacttctctttgattcaaaatggtcactccaacctaacaatca |
88 |
Q |
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| T |
33184875 |
tccattgggattataaaatggtaccttctctttgatacaaaatgtccactccaacctatcaatca |
33184939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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