View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1439_high_23 (Length: 237)
Name: NF1439_high_23
Description: NF1439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1439_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1464247 - 1464468
Alignment:
| Q |
1 |
attgtttcatattttctcgttacagactgccttcacatcaaagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgcaaagatcacgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1464247 |
attgtttcatattttctcgttacagactgccttcacatcaaagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgcaaagatcacgc |
1464346 |
T |
|
| Q |
101 |
catggtcttcagcctcctacctccaacactatcaatgagtatagtagctatgaggagctttcagagattgcagagcaagccaagaaacgtgctgaaatgg |
200 |
Q |
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| T |
1464347 |
catggtcttcagcctcctacctccaacactatcaatgagtatagtagctatgaggagctttcagagattgcagagcaagccaagaaacgtgctgaaatgg |
1464446 |
T |
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| Q |
201 |
caaggtaagccaattgaatggt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
1464447 |
caaggtaagccaattgaatggt |
1464468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 222
Target Start/End: Original strand, 1491676 - 1491857
Alignment:
| Q |
41 |
aagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgcaaagatcacgccatggtcttcagcctcctacctccaacactatcaatgagt |
140 |
Q |
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|||||||||||||||| | || | || ||||||||||||| | || | ||| |||||| ||||||||||| ||| |||||| ||| | ||||||| |
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| T |
1491676 |
aagaaagactatggtaaataacagagagaagcacaatgggaaacaacacaaggatcacttcatggtcttcaaccttttacctcaaaccttttcaatgaaa |
1491775 |
T |
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| Q |
141 |
atagtagctatgaggagctttcagagattgcagagcaagccaagaaacgtgctgaaatggcaaggtaagccaattgaatggt |
222 |
Q |
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| T |
1491776 |
atagtagctatagggagctttcagagattgcagagcaagacaagaaacatgctgaagttgcaagttaatccatttaaatggt |
1491857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 1490576 - 1490395
Alignment:
| Q |
41 |
aagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgcaaagatcacgccatggtcttcagcctcctacctccaacactatcaatgagt |
140 |
Q |
| |
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|||||||||||||||| |||| | || |||||||||||| | |||| || |||||| |||||| |||||||| |||||| ||| | | ||||| |
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| T |
1490576 |
aagaaagactatggtaaagaagagagagaagcacaatggaaagcagcacagggatcacttcatggtgttcagccttttacctcgaaccttttgaatgaaa |
1490477 |
T |
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| Q |
141 |
atagtagctatgaggagctttcagagattgcagagcaagccaagaaacgtgctgaaatggcaaggtaagccaattgaatggt |
222 |
Q |
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| T |
1490476 |
atagtagctaaagggagctttcagagattgtagagcaagacaagaaacacgttgtagttgcaaggtaagccatttgaatggt |
1490395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 1495455 - 1495269
Alignment:
| Q |
22 |
acagactgccttcacatcaaagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgcaaagatcacgccatggtcttcagcctcc---t |
118 |
Q |
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||||||||||||||| |||||||||||||||| | |||| | ||||||||||||||||| | ||||| ||| ||| || |||||||||||||| |
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| T |
1495455 |
acagactgccttcactacaaagaaagactatggaaaagaagagagggaagcacaatgggcggctgcgcagagaacacttcacggtcttcagcctccggaa |
1495356 |
T |
|
| Q |
119 |
acctccaacactatcaatgagtatagtagctatgaggagctttcagagattgcagagcaagccaagaaacgtgctgaaatggcaagg |
205 |
Q |
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| T |
1495355 |
gcctccaacgttttcaatgaaaagaatagctatagagaactttcggagattgcggagcaagccaagagacgtgctgaagttgcaagg |
1495269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 26791967 - 26792180
Alignment:
| Q |
9 |
atattttctcgttacagactgccttcacatcaaagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgcaaagatcacgccatggtct |
108 |
Q |
| |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||| |||||||| |
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| T |
26791967 |
atattttctcattacagactgccttcacttcaaagaaagactatggtagagaacagagggaagcacaatgggcatcaacacaaagatcaattcatggtct |
26792066 |
T |
|
| Q |
109 |
tcagcctcctacctccaacactatcaatgagtatagtagctatgaggagctttcagagattgcagagcaagccaagaaacgtgctgaaatggcaaggtaa |
208 |
Q |
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||||||| ||| |||| ||||| ||||||| ||||||||||| ||||||||||||| |||||||| | ||||| ||||||||| ||||| ||||||||| |
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| T |
26792067 |
tcagccttctagctcctacactttcaatgaaaatagtagctataaggagctttcagaaattgcagatctagccaggaaacgtgccgaaattgcaaggtaa |
26792166 |
T |
|
| Q |
209 |
gccaattgaatggt |
222 |
Q |
| |
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|||| ||||||||| |
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| T |
26792167 |
gccacttgaatggt |
26792180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 50277990 - 50278023
Alignment:
| Q |
21 |
tacagactgccttcacatcaaagaaagactatgg |
54 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
50277990 |
tacagactgccttcacaacaaagaaagactatgg |
50278023 |
T |
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