View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1439_high_27 (Length: 204)

Name: NF1439_high_27

Description: NF1439

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1439_high_27

[»] chr4 (1 HSPs)

[»] chr5 (6 HSPs)

Alignment Details

Target: chr4 (Bit Score: 133; Significance: 2e-69; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 133; E-Value: 2e-69

Query Start/End: Original strand, 18 - 188

Target Start/End: Original strand, 24219152 - 24219319

Alignment:

Q	18	aatggcttgcaagacttgttgaaagcatatttagcataagattgaaaaggacaaacaacaaagttggtgcaaaacgcagaagaatgaattagtttcactt	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24219152	aatggcttgcaagacatgttgaaagcatatttagcataagattgaaaaggacaaacaagaaagttggtgcaaatcgcagaagaatgaattagtttcac--	24219249	T

Q	118	gttgttgaataaattacattgttttttacacagcttattgtctatataccgaatgttatttgtgtcattca	188	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24219250	-ttgttgaataaattacattgtttttcacacagtttattgtctatatactgaatgttatttgtgtcattca	24219319	T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 6)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 44; E-Value: 3e-16

Query Start/End: Original strand, 19 - 114

Target Start/End: Original strand, 37383748 - 37383843

Alignment:

Q	19	atggcttgcaagacttgttgaaagcatatttagcataagattgaaaaggacaaacaacaaagttggtgcaaaacgcagaagaatgaattagtttca	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\| \| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	37383748	atggctttcaagactaattgaaagcatatttagcgtaagactacaaagaaaaaacaacagagctggtgcaaatcgcagaagaacgaattagtttca	37383843	T

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Target: chr5; HSP #2

Raw Score: 35; E-Value: 0.00000000007

Query Start/End: Original strand, 18 - 108

Target Start/End: Original strand, 37402422 - 37402512

Alignment:

Q	18	aatggcttgcaagacttgttgaaagcatatttagcataagattgaaaaggacaaacaacaaagttggtgcaaaacgcagaagaatgaatta	108	Q
		\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37402422	aatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaaacaacagatactgtgcaaatcgcagaagaatgaatta	37402512	T

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Target: chr5; HSP #3

Raw Score: 35; E-Value: 0.00000000007

Query Start/End: Original strand, 18 - 108

Target Start/End: Complemental strand, 37531836 - 37531746

Alignment:

Q	18	aatggcttgcaagacttgttgaaagcatatttagcataagattgaaaaggacaaacaacaaagttggtgcaaaacgcagaagaatgaatta	108	Q
		\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37531836	aatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaaacaacagatactgtgcaaatcgcagaagaatgaatta	37531746	T

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Target: chr5; HSP #4

Raw Score: 35; E-Value: 0.00000000007

Query Start/End: Original strand, 18 - 108

Target Start/End: Complemental strand, 37592940 - 37592850

Alignment:

Q	18	aatggcttgcaagacttgttgaaagcatatttagcataagattgaaaaggacaaacaacaaagttggtgcaaaacgcagaagaatgaatta	108	Q
		\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37592940	aatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaaacaacagatactgtgcaaatcgcagaagaatgaatta	37592850	T

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Target: chr5; HSP #5

Raw Score: 35; E-Value: 0.00000000007

Query Start/End: Original strand, 18 - 108

Target Start/End: Complemental strand, 37695331 - 37695241

Alignment:

Q	18	aatggcttgcaagacttgttgaaagcatatttagcataagattgaaaaggacaaacaacaaagttggtgcaaaacgcagaagaatgaatta	108	Q
		\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37695331	aatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaaacaacagatactgtgcaaatcgcagaagaatgaatta	37695241	T

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Target: chr5; HSP #6

Raw Score: 30; E-Value: 0.00000007

Query Start/End: Original strand, 18 - 75

Target Start/End: Original strand, 37394310 - 37394367

Alignment:

Q	18	aatggcttgcaagacttgttgaaagcatatttagcataagattgaaaaggacaaacaa	75	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	37394310	aatggcttgcaagacatgttgaaaatatgtttaacataagattgaaaagatcaaacaa	37394367	T

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