View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1439_high_3 (Length: 415)

Name: NF1439_high_3
Description: NF1439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1439_high_3
NF1439_high_3
[»] chr1 (11 HSPs)
chr1 (1-397)||(6240792-6241188)
chr1 (65-213)||(19709100-19709249)
chr1 (65-221)||(47900365-47900523)
chr1 (50-130)||(15244202-15244281)
chr1 (39-133)||(15731360-15731454)
chr1 (50-220)||(39440650-39440820)
chr1 (165-222)||(19883295-19883352)
chr1 (161-222)||(33078686-33078747)
chr1 (155-231)||(1971975-1972051)
chr1 (72-213)||(15877633-15877774)
chr1 (265-372)||(39440872-39440980)
[»] chr4 (9 HSPs)
chr4 (65-355)||(4225064-4225362)
chr4 (232-389)||(7355138-7355295)
chr4 (65-236)||(12110099-12110271)
chr4 (50-139)||(7355024-7355113)
chr4 (39-102)||(10179278-10179341)
chr4 (39-129)||(30500389-30500480)
chr4 (50-236)||(50688340-50688524)
chr4 (285-344)||(12110327-12110386)
chr4 (178-222)||(5066633-5066677)
[»] chr6 (1 HSPs)
chr6 (65-389)||(14274400-14274727)
[»] chr7 (9 HSPs)
chr7 (50-205)||(16803395-16803549)
chr7 (165-356)||(2476868-2477066)
chr7 (297-385)||(26573086-26573174)
chr7 (50-221)||(29542255-29542426)
chr7 (51-203)||(984101-984254)
chr7 (50-213)||(26572832-26572995)
chr7 (154-222)||(12865904-12865972)
chr7 (39-102)||(2476792-2476855)
chr7 (154-210)||(1781025-1781081)
[»] chr2 (6 HSPs)
chr2 (39-137)||(17558454-17558553)
chr2 (164-236)||(25895489-25895560)
chr2 (167-221)||(5369804-5369858)
chr2 (168-222)||(30969605-30969659)
chr2 (165-222)||(33856129-33856186)
chr2 (50-102)||(25895375-25895427)
[»] chr3 (1 HSPs)
chr3 (50-209)||(862310-862469)
[»] chr5 (4 HSPs)
chr5 (232-356)||(17468643-17468768)
chr5 (168-213)||(20625849-20625894)
chr5 (50-129)||(23361383-23361462)
chr5 (165-236)||(27893198-27893269)
[»] chr8 (3 HSPs)
chr8 (165-212)||(25233519-25233566)
chr8 (162-212)||(30122587-30122637)
chr8 (161-213)||(7635042-7635094)
[»] scaffold0037 (1 HSPs)
scaffold0037 (182-236)||(107954-108008)


Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 6241188 - 6240792
Alignment:
Q  1 aagcatcacctaagtaaccttaactcnnnnnnnnnaaggaactagcagacatgctcatatatttagaagatgagatggagtgagaactctagtgctgcta 100  Q
    ||||||||||||||||||||||||||         |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  6241188 aagcatcacctaagtaaccttaactctttttttttaaggaactagcacacatgctcatatatgtagaagatgagatggagtgagaactctagtgctgtta 6241089  T
Q  101 actatagttggaacttggtcgctcaattcacaatgtaaagttcaggactcctagcactaccatgtggttgtcccttaatagtacaaggtcaaccacttca 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6241088 actatagttggaacttggtcgctcaattcacaatgtaaaattcaggactcctagcactaccatgtggttgtccctttatagtacaaggtcaaccacttca 6240989  T
Q  201 agttgtacccttttgtcatttttcctatgagttgtcttatcctatcattgccagacatattctctattcatcgtactactaataattggtgtcagcccat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||    
T  6240988 agttgtacccttttgtcatttttcctatgagttgtcttatcctatcattgccagacatattctttattcctcgtactactaataattggtgttagcccat 6240889  T
Q  301 agaacttactcattaatcaatgataagaaggggtccatgagttcgtacaatagtacaacccgactgatgatctggtatgctacatcttcctatgtct 397  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6240888 agaacttactcattaatcaatgataagaaggggtcaatgagttcgtacaatagtgcaacccgactgatgatctggtatgctacatcttcctatgtct 6240792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 65 - 213
Target Start/End: Complemental strand, 19709249 - 19709100
Alignment:
Q  65 agaagatgagatggagtgagaactctagtgc-tgctaactatagttggaacttggtcgctcaattca-caatgtaaagttcaggactcctagcactacca 162  Q
    ||||||||||||||||||||||||||| ||  |||||||| ||| |||||||||||||||   |||| ||||| ||| ||  | || | |||||||| ||    
T  19709249 agaagatgagatggagtgagaactctactggatgctaactctagctggaacttggtcgcttggttcaacaatgcaaatttt-gaacccttagcactaaca 19709151  T
Q  163 tgtggttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttt 213  Q
    ||||||||||  || |||||||||||||||||||| |||||||||||||||    
T  19709150 tgtggttgtcattttatagtacaaggtcaaccactacaagttgtacccttt 19709100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 47900365 - 47900523
Alignment:
Q  65 agaagatgagatggagtgagaactctagtgctgctaactatagttggaacttggtcgctcaattcacaa-tgtaaagttcaggactcctag-cactacca 162  Q
    ||||||||||| ||||||||||| |||||||| || ||  ||| |||||||||  |||||||||||||| |||||| |||||||| | | | ||||| ||    
T  47900365 agaagatgagaaggagtgagaacgctagtgctactcaccctagatggaacttgaccgctcaattcacaagtgtaaaattcaggaccctttgacactaaca 47900464  T
Q  163 tgtggttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttttgtcattt 221  Q
    ||| ||||||| || |||||  ||||||||||| |  ||||||||| |||| |||||||    
T  47900465 tgttgttgtccttttatagtgtaaggtcaaccattataagttgtactctttggtcattt 47900523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 15244281 - 15244202
Alignment:
Q  50 catgctcatatatttagaagatgagatggagtgagaactctagtgctgctaactatagttggaacttggtcgctcaattca 130  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||||||| |||| | |||||||| | |||||||||    
T  15244281 catgctcatctatagagaagatgagatggagtgagaactctagtgctgctaaccatagct-gaacttggccactcaattca 15244202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 15731454 - 15731360
Alignment:
Q  39 gaactagcagacatgctcatatatttagaagatgagatggagtgagaactctagtgctgctaactatagttggaacttggtcgctcaattcacaa 133  Q
    |||||||||  ||||||||| |||  ||||||||||||||||||||||||| ||||||||||||  ||| || ||||||  | ||||||||||||    
T  15731454 gaactagcactcatgctcatctatggagaagatgagatggagtgagaactccagtgctgctaaccctagctgcaacttgaccactcaattcacaa 15731360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 39440650 - 39440820
Alignment:
Q  50 catgctcatatatttagaagatgagatggagtgagaactctagtgctgctaactatagttggaacttggtcgctcaattcacaatgtaaagttcaggact 149  Q
    ||||||||| |||  ||||||||| ||| ||||| |||||||||||| |||||  ||  |||||||||||| ||||||||    |||||| |   ||||     
T  39440650 catgctcatctatggagaagatgatatgaagtgaaaactctagtgctcctaaccctaactggaacttggtctctcaattcgttgtgtaaaatatcggacc 39440749  T
Q  150 cctagcactaccatgtggttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttttgtcatt 220  Q
    | |  ||||| ||||||||||||| || |||||| |||  |||||||| |||||||||||||||| |||||    
T  39440750 cttgacactaacatgtggttgtccttttatagtataagaccaaccactacaagttgtacccttttatcatt 39440820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 19883295 - 19883352
Alignment:
Q  165 tggttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttttgtcatttt 222  Q
    ||||||||| |  ||||||||||| |||||||| ||||||||||||||| ||||||||    
T  19883295 tggttgtccttctatagtacaaggccaaccactacaagttgtaccctttggtcatttt 19883352  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 33078747 - 33078686
Alignment:
Q  161 catgtggttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttttgtcatttt 222  Q
    ||||||||||||| ||  |||||||||| |||||||| |||||||||| |||| ||||||||    
T  33078747 catgtggttgtccttttttagtacaaggccaaccactacaagttgtactctttggtcatttt 33078686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 1972051 - 1971975
Alignment:
Q  155 cactaccatgtggttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttttgtcatttttcctatgag 231  Q
    ||||| ||||||||||||| || |||||||||||| ||||||   ||||| |||||||| || ||||| ||||||||    
T  1972051 cactaacatgtggttgtccttttatagtacaaggtaaaccacaataagttataccctttggtaattttccctatgag 1971975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 213
Target Start/End: Complemental strand, 15877774 - 15877633
Alignment:
Q  72 gagatggagtgagaactctagtgctgctaactatagttggaacttggtcgctc-aattcacaatgtaaagttcaggactcctagcactaccatgtggttg 170  Q
    |||||||||||||||||| |  |||||||||  ||| | |||||||| | ||| ||||||| ||  ||  ||||| |||| | |||| | ||||||||||    
T  15877774 gagatggagtgagaactccaaagctgctaaccctaggtagaacttggcctctccaattcactatcaaattttcag-actcatggcaccaacatgtggttg 15877676  T
Q  171 tcccttaatagtacaaggtcaaccacttcaagttgtacccttt 213  Q
     || || ||||||||||| ||||| || |||||||||||||||    
T  15877675 accttttatagtacaaggccaacctctacaagttgtacccttt 15877633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 372
Target Start/End: Original strand, 39440872 - 39440980
Alignment:
Q  265 tattcatcgtactactaataattggtgtcagcccatagaacttactcattaatcaatgataagaaggggt-ccatgagttcgtacaatagtacaacccga 363  Q
    ||||| || |||||| ||| |||||  ||| | |||||||||||  |||||| |||||||||||||| || ||||| |||||||| || |||||| || |    
T  39440872 tattcctcatactaccaatcattggcatcaacacatagaacttaaccattaagcaatgataagaaggtgtcccatgggttcgtactattgtacaatccaa 39440971  T
Q  364 ctgatgatc 372  Q
    |||| ||||    
T  39440972 ctgacgatc 39440980  T

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Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 65 - 355
Target Start/End: Complemental strand, 4225362 - 4225064
Alignment:
Q  65 agaagatgagatggagtgagaactctagtgctgctaactatagttggaacttggtcgctcaattcacaa-tgtaaagttcaggactcctagcactaccat 163  Q
    ||||||||||||| |||||||| ||||||| |||||||  |||||||| ||||| |||||||||||||| |||||||||  |||| |||||||||||||     
T  4225362 agaagatgagatgaagtgagaagtctagtgttgctaaccctagttgga-cttggccgctcaattcacaagtgtaaagtttcggacccctagcactaccac 4225264  T
Q  164 gtggttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttttgtcatttttcctatga------gttgtcttatcctatcattg-ccagac 256  Q
     ||||||||| |  |||||||||||||||||||| ||||||||||||||| ||||||| | ||||||       ||||||||||| ||||  |   ||||    
T  4225263 atggttgtccttatatagtacaaggtcaaccactacaagttgtaccctttggtcatttcttctatgacttgtccttgtcttatcccatcaacgttaagac 4225164  T
Q  257 atattc-tctattcatcgtactactaataattggtgtcagcccatagaacttactcattaatcaatgataagaaggggtccatgagttcgtacaatagta 355  Q
    |||||| | ||||| | |||||   |||| ||||||||||||||||||||||||||||||| ||| |||||||||||  |||||||||| || |||||||    
T  4225163 atattcatttattccttgtactgtcaatagttggtgtcagcccatagaacttactcattaagcaaagataagaagggtcccatgagttcttataatagta 4225064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 232 - 389
Target Start/End: Original strand, 7355138 - 7355295
Alignment:
Q  232 ttgtcttatcctatcattgccagacatattctctattcatcgtactactaataattggtgtcagcccatagaacttactcattaatcaatgataagaagg 331  Q
    ||||| ||||||||||  |||| ||||||||| ||||| | ||||| | |||  |||||| || | ||||||||||||||||||| ||||||||||||||    
T  7355138 ttgtcatatcctatcagcgccaaacatattctttattccttgtactgccaatcgttggtgccaactcatagaacttactcattaagcaatgataagaagg 7355237  T
Q  332 ggtccatgagttcgtacaatagtacaacccgactgatgatctggtatgctacatcttc 389  Q
       ||||||||||||||||||||||||||||||   ||||||| |||| |||||||||    
T  7355238 cccccatgagttcgtacaatagtacaacccgacccgtgatctgatatgttacatcttc 7355295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 236
Target Start/End: Original strand, 12110099 - 12110271
Alignment:
Q  65 agaagatgagatggagtgagaactctagtgctgctaactatagttggaacttggtcgctcaattcacaatgtaaagttcaggactcc-tagcactaccat 163  Q
    ||||||||| ||||||||||| || |||||||||||||  ||| |||||||||  | ||||||||||||| |||| ||  || | || ||| | ||||||    
T  12110099 agaagatgacatggagtgagagctatagtgctgctaaccgtagctggaacttgtccactcaattcacaatctaaaatttcggcccccctagtattaccat 12110198  T
Q  164 gtggttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttttgtcatttttcctatgagttgtc 236  Q
    |||||||||| || |||||| |||| |||| ||| ||||||||||||||| |||||||  | |||||||||||    
T  12110199 gtggttgtccttttatagtagaaggccaacaactacaagttgtaccctttagtcatttcccatatgagttgtc 12110271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 7355024 - 7355113
Alignment:
Q  50 catgctcatatatttagaagatgagatggagtgagaactctagtgctgctaactatagttggaacttggtcgctcaattcacaatgtaaa 139  Q
    ||||||||| |||  |||| |||||||  ||||||||||||||||||| ||||  ||| |||||||||||||||||| |||| |||||||    
T  7355024 catgctcatctatggagaaaatgagataaagtgagaactctagtgctgttaaccctagctggaacttggtcgctcaactcacgatgtaaa 7355113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 10179341 - 10179278
Alignment:
Q  39 gaactagcagacatgctcatatatttagaagatgagatggagtgagaactctagtgctgctaac 102  Q
    |||||||||  ||||||||| |||  |||||||||||||||||||||||||||||||| |||||    
T  10179341 gaactagcactcatgctcatctatggagaagatgagatggagtgagaactctagtgctcctaac 10179278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 30500480 - 30500389
Alignment:
Q  39 gaactagcagacatgctcatatatttagaagatgagatggagtgagaactctag-tgctgctaactatagttggaacttggtcgctcaattc 129  Q
    |||||||||  ||||||||| |||   |||||||||||||||||||||||||||  | |||||||  ||| |||||||||| ||||||||||    
T  30500480 gaactagcactcatgctcatctatgaggaagatgagatggagtgagaactctagcggttgctaaccctagctggaacttggccgctcaattc 30500389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 236
Target Start/End: Complemental strand, 50688524 - 50688340
Alignment:
Q  50 catgctcatatatttagaagatgagatggagtgagaactctagtgctgctaactatagttggaacttggtcgctcaattcacaatgtaaagttcaggact 149  Q
    ||||||||| |||  ||||||||||||||||||||||||||| ||||| ||||  || |   ||||||| | || ||||||||||||||| ||  ||||     
T  50688524 catgctcatctatggagaagatgagatggagtgagaactcta-tgctgttaacccta-tctaaacttggccactaaattcacaatgtaaattttcggacc 50688427  T
Q  150 cctagcactaccatgtggttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttttgtcatttttcctatgagttgtc 236  Q
    |||  |||||||||||| || ||| || ||||||| |||  ||||| | ||||||    ||||| ||||||| | ||||||||||||    
T  50688426 ccttacactaccatgtgattatccttttatagtacgaggctaaccagtacaagttaggtcctttggtcatttatgctatgagttgtc 50688340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 12110327 - 12110386
Alignment:
Q  285 attggtgtcagcccatagaacttactcattaatcaatgataagaaggggtccatgagttc 344  Q
    ||||||| ||||||| | ||||||||| |||| |||||||||||||||  ||||||||||    
T  12110327 attggtgccagcccacaaaacttactcgttaagcaatgataagaagggccccatgagttc 12110386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 5066677 - 5066633
Alignment:
Q  178 atagtacaaggtcaaccacttcaagttgtacccttttgtcatttt 222  Q
    ||||||||||| || ||||| ||||||||||||||| ||||||||    
T  5066677 atagtacaaggccacccactacaagttgtaccctttggtcatttt 5066633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 65 - 389
Target Start/End: Complemental strand, 14274727 - 14274400
Alignment:
Q  65 agaagatgagatggagtgagaactctagtgctgct-aactatagttggaacttggtcgctcaattcacaa-tgtaaagttcaggactcctagcactacca 162  Q
    |||| ||||||||||||||||||||||||||| || |||  ||| | || ||||| |||| ||||||||| ||| || ||  |||| |||||  ||||||    
T  14274727 agaaaatgagatggagtgagaactctagtgcttcttaaccctagcttga-cttggccgcttaattcacaaatgtcaaatttcggacccctagtgctacca 14274629  T
Q  163 tgtggttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttttgtcatttttcctatgagttgtctta-tcctatcattgccagacata-t 260  Q
     |||||||||| || ||| |||||||||||||||| ||| ||||||||||| ||||||| |||||||| ||||| || ||||| ||  |  ||||||| |    
T  14274628 cgtggttgtccttttataatacaaggtcaaccactacaatttgtaccctttagtcatttgtcctatgacttgtcctattcctaccagcgtaagacatagt 14274529  T
Q  261 tctctattcatcgtactactaataattggtgtcagcccatagaacttactcattaatcaatgataagaaggggtccatgagttcgtacaatagtacaacc 360  Q
     ||  |||| | ||||| | ||| |||| || || |||||| |||||||||||||| |||||| |||||||| || |||||||| | |||||||||||||    
T  14274528 acttgattccttgtactgccaatcattgatgccaacccataaaacttactcattaagcaatgacaagaagggctcaatgagttcatccaatagtacaacc 14274429  T
Q  361 cgactgatgatctggtatgctacatcttc 389  Q
    |  |||   || |||||||||||||||||    
T  14274428 cagctggaaatatggtatgctacatcttc 14274400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 205
Target Start/End: Complemental strand, 16803549 - 16803395
Alignment:
Q  50 catgctcatatatttagaagatgagatggagtgagaactctagtgctgctaactatagttggaacttggtcgctcaattcacaatgtaaagttcaggact 149  Q
    ||||||||| |||  ||||||||||||| |||||||||||||  |||||||||  |||||||||||||| | ||||| |||||||  ||| ||| ||||     
T  16803549 catgctcatctatggagaagatgagatgtagtgagaactctaaagctgctaaccctagttggaacttggcctctcaaatcacaatcaaaatttc-ggacc 16803451  T
Q  150 cctagcactaccatgtggttgtcccttaatagtacaaggtcaaccacttcaagttg 205  Q
    | | |||||| ||||||||||||| || ||||||||||| ||| ||||||||||||    
T  16803450 cttggcactaacatgtggttgtcctttcatagtacaaggacaatcacttcaagttg 16803395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 165 - 356
Target Start/End: Original strand, 2476868 - 2477066
Alignment:
Q  165 tggttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttttgtcatttttcctatgagttgtc-ttatcctat--catt---gccagacat 258  Q
    ||||||| | ||||||||||||||||||||||| |||||||||||||||  |||||||  | ||||| | || ||||| |||  |||    | |||||||    
T  2476868 tggttgttctttaatagtacaaggtcaaccactacaagttgtaccctttgatcattttatccatgagctatccttatcttatatcatgagcgtcagacat 2476967  T
Q  259 attctct-attcatcgtactactaataattggtgtcagcccatagaacttactcattaatcaatgataagaaggggtccatgagttcgtacaatagtac 356  Q
    ||||| | |||| | ||||||| ||| |||||||||| ||||||||||||||||| ||| || |||||||||||| ||||||||||| |||||| ||||    
T  2476968 attcttttattccttgtactaccaatcattggtgtcatcccatagaacttactcactaagcactgataagaagggctccatgagttcatacaattgtac 2477066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 297 - 385
Target Start/End: Original strand, 26573086 - 26573174
Alignment:
Q  297 ccatagaacttactcattaatcaatgataagaaggggtccatgagttcgtacaatagtacaacccgactgatgatctggtatgctacat 385  Q
    ||||| |||||||||||||| ||||||||| |||||  |||||||||||||||||||||| || |||||| ||||||||||||||||||    
T  26573086 ccatataacttactcattaaacaatgataataagggtaccatgagttcgtacaatagtacgactcgactgttgatctggtatgctacat 26573174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 29542255 - 29542426
Alignment:
Q  50 catgctcatatatttagaagatgagatggagtgagaactctagtgctgctaactatagttggaacttggtcgctcaattcacaatgtaaagttcaggact 149  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||  |||||| ||| |||||||||| |  | ||||||| ||||||| ||  | ||     
T  29542255 catgctcatatatggagaagatgagatgaagtgagaactctagtgcaactaactctagctggaacttggcctttaaattcaccatgtaaaatttcgaacc 29542354  T
Q  150 cctagcactaccatgtggttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttttgtcattt 221  Q
      | |||||| |||||||||| || || ||| ||||||| | || |||  |||||||||||||| |||||||    
T  29542355 tttggcactaacatgtggttgcccttttatattacaaggcctacgactataagttgtaccctttggtcattt 29542426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 203
Target Start/End: Complemental strand, 984254 - 984101
Alignment:
Q  51 atgctcatatatttagaagatgagatggagtgagaactctagtgctgct-aactatagttggaacttggtcgctcaattcacaa-tgtaaagttcaggac 148  Q
    |||||||| ||| ||||| |||||||||| |||||||||| ||||| || |||  ||| |||| ||||  |||| ||||||||| | |||| ||  ||||    
T  984254 atgctcatctatgtagaatatgagatggattgagaactctggtgctacttaaccttagctgga-cttgcccgcttaattcacaagtctaaaattttggac 984156  T
Q  149 tcctagcactaccatgtggttgtcccttaatagtacaaggtcaaccacttcaagt 203  Q
     |||||||||||||| ||||||||| || |||||| ||||||||||||| |||||    
T  984155 ccctagcactaccatatggttgtccttttatagtagaaggtcaaccactacaagt 984101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 213
Target Start/End: Original strand, 26572832 - 26572995
Alignment:
Q  50 catgctcatatatttagaagatgagatggagtgagaactctagtgctgctaactatagttggaacttggtcgctcaattcacaa-tgtaaagttcaggac 148  Q
    ||||||||| |||  ||||||||||||  ||| ||||||||||| ||||||||  ||| | ||| |||| | |||||||||||| |||||| ||||||||    
T  26572832 catgctcatctatggagaagatgagata-agtcagaactctagtactgctaaccctagctagaa-ttggcctctcaattcacaagtgtaaaattcaggac 26572929  T
Q  149 tcctag-cactaccatgtggttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttt 213  Q
     | | | ||||| |||||| || ||| || |||||||||||  | ||||| |||||||||||||||    
T  26572930 ccattggcactaacatgtgattttccttttatagtacaaggctagccactacaagttgtacccttt 26572995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 12865904 - 12865972
Alignment:
Q  154 gcactaccatgtggttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttttgtcatttt 222  Q
    |||||| ||||||||||||| || |||||||| |||  |||||| ||||||| ||||||| ||||||||    
T  12865904 gcactaacatgtggttgtccttttatagtacatggtggaccactacaagttgcaccctttggtcatttt 12865972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 2476792 - 2476855
Alignment:
Q  39 gaactagcagacatgctcatatatttagaagatgagatggagtgagaactctagtgctgctaac 102  Q
    |||||||||  ||||||||| |||  ||||||||||||  ||||||||||||||| ||||||||    
T  2476792 gaactagcactcatgctcatctatgaagaagatgagattaagtgagaactctagtactgctaac 2476855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 1781025 - 1781081
Alignment:
Q  154 gcactaccatgtggttgtcccttaatagtacaaggtcaaccacttcaagttgtaccc 210  Q
    |||||| ||||||||| ||  || ||||||||| |||||||||| ||||||||||||    
T  1781025 gcactaacatgtggttatcggtttatagtacaatgtcaaccactacaagttgtaccc 1781081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 17558454 - 17558553
Alignment:
Q  39 gaactagcagacatgctcatatatttagaagatgagatggagtgagaactctagt-gctgctaactatagttggaacttggtcgctcaattcacaatgta 137  Q
    |||||||||  ||||||||| |||  |||||||||||  |||||||||||||| | |||||||||  ||| | |||||||| ||||||||||||||||||    
T  17558454 gaactagcactcatgctcatctatggagaagatgagacagagtgagaactctaatagctgctaaccctagctagaacttggccgctcaattcacaatgta 17558553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 25895489 - 25895560
Alignment:
Q  164 gtggttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttttgtcatttttcctatgagttgtc 236  Q
    |||||||||| || ||| ||||||||||||||||  |||||||||||||| |||| |||||||||||| ||||    
T  25895489 gtggttgtccttttatattacaaggtcaaccactaaaagttgtaccctttggtca-ttttcctatgagatgtc 25895560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 5369858 - 5369804
Alignment:
Q  167 gttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttttgtcattt 221  Q
    ||||||| || ||||||||||| |||||||| ||||||||||||||| |||||||    
T  5369858 gttgtccttttatagtacaaggccaaccactacaagttgtaccctttggtcattt 5369804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 30969659 - 30969605
Alignment:
Q  168 ttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttttgtcatttt 222  Q
    |||||| || |||||||||||||| ||||| ||||||||||||||| ||||||||    
T  30969659 ttgtccttttatagtacaaggtcacccactacaagttgtaccctttggtcatttt 30969605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 33856129 - 33856186
Alignment:
Q  165 tggttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttttgtcatttt 222  Q
    ||||| ||| || ||||||||||  |||||||| ||||||||||||||| ||||||||    
T  33856129 tggttttccttttatagtacaagaccaaccactccaagttgtaccctttagtcatttt 33856186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 25895375 - 25895427
Alignment:
Q  50 catgctcatatatttagaagatgagatggagtgagaactctagtgctgctaac 102  Q
    ||||||||| |||  |||||||||||||||||||||||| ||  |||||||||    
T  25895375 catgctcatctatggagaagatgagatggagtgagaactataaagctgctaac 25895427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 209
Target Start/End: Complemental strand, 862469 - 862310
Alignment:
Q  50 catgctcatatatttagaagatgagatggagtgagaactctagtgctgctaactatagttggaacttggtcgctcaattcacaa-tgtaaagttcaggac 148  Q
    ||||||||| |||  ||||||||||||||||||| |||||||||| |||||||  ||| ||| ||||   | |||||||||||| |||||| ||  ||||    
T  862469 catgctcatctatgaagaagatgagatggagtgaaaactctagtgatgctaaccctagctgg-acttccccactcaattcacaagtgtaaaatttcggac 862371  T
Q  149 tcctagcactaccatgtggttgtcccttaatagtacaaggtcaaccacttcaagttgtacc 209  Q
       | ||||||   ||||||||||| ||  | ||||||||||||||||| |||||||||||    
T  862370 ctttggcactaatgtgtggttgtccttttgtggtacaaggtcaaccactacaagttgtacc 862310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 356
Target Start/End: Complemental strand, 17468768 - 17468643
Alignment:
Q  232 ttgtcttatcctatcattgccagacatattc-tctattcatcgtactactaataattggtgtcagcccatagaacttactcattaatcaatgataagaag 330  Q
    ||||||||||| ||||| | |||||||| || | ||||| | ||||| ||||| ||||||| || | | |||||||| |||||||| ||||| |||||||    
T  17468768 ttgtcttatcccatcatcgtcagacatagtcctttattccttgtactgctaatcattggtgccaactcgtagaacttgctcattaagcaatggtaagaag 17468669  T
Q  331 gggtccatgagttcgtacaatagtac 356  Q
    |   |||| |||| ||||||||||||    
T  17468668 gctcccatcagtttgtacaatagtac 17468643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 20625894 - 20625849
Alignment:
Q  168 ttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttt 213  Q
    |||||| || |||||||||||||||||||| |||||||||||||||    
T  20625894 ttgtccttttatagtacaaggtcaaccactacaagttgtacccttt 20625849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 23361462 - 23361383
Alignment:
Q  50 catgctcatatatttagaagatgagatggagtgagaactctagtgctgctaactatagttggaacttggtcgctcaattc 129  Q
    ||||||||| |||  |||| |||||||||||||||||||||||| ||  |||  |||| |||||||||| | ||||||||    
T  23361462 catgctcatctatggagaaaatgagatggagtgagaactctagtactaataatgatagctggaacttggcctctcaattc 23361383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 27893269 - 27893198
Alignment:
Q  165 tggttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttttgtcatttttcctatgagttgtc 236  Q
    ||||||||| || ||| ||||||| |||||||| ||| ||||||||||| |||||||| |  ||||||||||    
T  27893269 tggttgtccttttataatacaaggccaaccactgcaatttgtaccctttggtcattttacacatgagttgtc 27893198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 25233566 - 25233519
Alignment:
Q  165 tggttgtcccttaatagtacaaggtcaaccacttcaagttgtaccctt 212  Q
    ||||||||| || ||||||||||| |||||||| ||||||||||||||    
T  25233566 tggttgtccttttatagtacaaggccaaccactacaagttgtaccctt 25233519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 30122587 - 30122637
Alignment:
Q  162 atgtggttgtcccttaatagtacaaggtcaaccacttcaagttgtaccctt 212  Q
    |||||||| ||| || ||||||||||| |||||||| ||||||||||||||    
T  30122587 atgtggttttccttttatagtacaaggccaaccactacaagttgtaccctt 30122637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 7635094 - 7635042
Alignment:
Q  161 catgtggttgtcccttaatagtacaaggtcaaccacttcaagttgtacccttt 213  Q
    ||||||||||||| || ||||||||||| || ||||| |||||||||| ||||    
T  7635094 catgtggttgtccttttatagtacaaggccagccactgcaagttgtactcttt 7635042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 108008 - 107954
Alignment:
Q  182 tacaaggtcaaccacttcaagttgtacccttttgtcatttttcctatgagttgtc 236  Q
    |||||||||||||||| |||||||||   ||| |||||||| |||||||||||||    
T  108008 tacaaggtcaaccactgcaagttgtatgatttggtcattttacctatgagttgtc 107954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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