View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1439_high_6 (Length: 404)
Name: NF1439_high_6
Description: NF1439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1439_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 390
Target Start/End: Complemental strand, 3010071 - 3009689
Alignment:
| Q |
8 |
agcataggaaagtggaagcatatcacatcaatatgaaaattgttactatgactaactatttattaagcatcttatcccattgtataagaaggtgttggta |
107 |
Q |
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| T |
3010071 |
agcataggaaagtggaagcatatcacatcaatatgaaaattgttactatgactaactatttattaagcatcttatcccattgtataagaaggtgttggta |
3009972 |
T |
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| Q |
108 |
agttgattactgtggtcttaatcttggtcatcatgttaatactgttggtgattccttgagaaccaattccactatccttcaaaccctgcaacaaatcata |
207 |
Q |
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| T |
3009971 |
agttgattactgtggtcttaatcttggtcatcatgttaatactgtttgtgattccttgagaaccaattccactatccttcaaaccctgcaacaaatcata |
3009872 |
T |
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| Q |
208 |
ttttggtagtttagacaggtnnnnnnnnctaattattcaaagatattcattaaaatatgttcataactaagcatggcttcatatctattcttaacaagag |
307 |
Q |
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| T |
3009871 |
ttttggtagtttagacaggtaaaaaaaactaattattcaaagatattcattaaaatatgttcataactaagcatggcttcatatctattcttaacaagag |
3009772 |
T |
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| Q |
308 |
cttgagatgcaaccatgactgtaagtatgtaactgcaatttaataacttggtggttaagctaacatatcaatcaactatgttg |
390 |
Q |
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| T |
3009771 |
cttgagatgcaaccatgactgtaagtatgtaactgcaatttaataacttggtggttaagctaacatatcaatcaactatgttg |
3009689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 54724647 - 54724744
Alignment:
| Q |
83 |
cccattgtataagaaggtgttggtaagttgattactgtggtcttaatcttggtcatcatgttaatactgttggtgattccttgagaaccaattccact |
180 |
Q |
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| T |
54724647 |
cccatggtataagaagggcttggcaagtttatcacggtagttttgatttttgtcatcatgtttatgctgttggtaattccttgtgatccaattccact |
54724744 |
T |
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