View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1439_low_11 (Length: 323)
Name: NF1439_low_11
Description: NF1439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1439_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 64 - 307
Target Start/End: Complemental strand, 5719798 - 5719555
Alignment:
| Q |
64 |
cccttcattattcatatatctccaaatgttattctatgttttttgttcctcttacaatcaatgagactcccaaaaaagtccaatcccagaaactnnnnnn |
163 |
Q |
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| T |
5719798 |
cccttcattattcatatatctccaaatgttattctatgttttttgttcctcttacaatcaatgagactcccaaaaaagtccaatcccagaaactaaaaaa |
5719699 |
T |
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| Q |
164 |
ntaaagttactccaatcaacttaaccaggaaaatgaaaactacaacaattgatttcaattctttccgttccattttccaccatccaaacacgatcaatgt |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5719698 |
ataaagttactccaatcaacttaaccaggaaaatgaaaactacaacaattgatttcaattctttccgttccattttccaccatccaaacacgatcaatgt |
5719599 |
T |
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| Q |
264 |
cagacttcaataaaaccagtcatcctaagaatcgaattcctaac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5719598 |
cagacttcaataaaaccagtcatcctaagaatcgaattcctaac |
5719555 |
T |
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