View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1439_low_13 (Length: 317)
Name: NF1439_low_13
Description: NF1439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1439_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 85 - 307
Target Start/End: Complemental strand, 46604438 - 46604217
Alignment:
| Q |
85 |
aaatctaaactcttgcttactattgtcaaagtatcacaagtaggtgagtgatatgaatactttctttaatactcattttcttattagataaaatttacat |
184 |
Q |
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| T |
46604438 |
aaatctaaactcttgcttactattgtcaaagtatcacaagtaggtgagtgatatgaatactttctttaatactcatttccttattagatgaaatttacat |
46604339 |
T |
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| Q |
185 |
gaattttacactttgtaaatgatttcgtataaagtggtgaaaaccacgtgagtttaaacccaataaaaagtgaaatgtaaagataatattaaaaagagag |
284 |
Q |
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| T |
46604338 |
gaattttacaatttgtaaatgatttcgtataaagtggtgaaagccacgtgagttt-aacccaataaaaagtgaaatgtaaagataatattaaaaagagag |
46604240 |
T |
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| Q |
285 |
tgtttctaatatgtctcatatca |
307 |
Q |
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| T |
46604239 |
tgtttctaatatgcctcatatca |
46604217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 46606057 - 46605982
Alignment:
| Q |
18 |
acttcatcacctatcttaagaatttatctgcctcagcctcataagcattagtcctccatgataaagaaaatctaaa |
93 |
Q |
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| T |
46606057 |
acttcatcacctatcttaagaatttatctgcctcagcctcataagcattagtcctccatgataaagaaaatttaaa |
46605982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 46604060 - 46604015
Alignment:
| Q |
262 |
taaagataatattaaaaagagagtgtttctaatatgtctcatatca |
307 |
Q |
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| T |
46604060 |
taaagataatattaaaaagaaagtgtttctaatatgtctcatatca |
46604015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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