View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1439_low_17 (Length: 250)
Name: NF1439_low_17
Description: NF1439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1439_low_17 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 16003228 - 16003470
Alignment:
| Q |
9 |
gattattcttatgtaggttcacttcctttttaattaaaattaaaaagcatatcttttgttttnnnnnnnnnnnnnntctgtcttcttttatttatttttc |
108 |
Q |
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| T |
16003228 |
gattattcttatgtaggttcacttcctttttaattaaaattaaaaagcatatcttttgttttaaattttttttttttttgtcttcttttatttctttttc |
16003327 |
T |
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| Q |
109 |
tgaaacagtctaaccaaaatatatgatatgaaaattcaatatgaaatc-gtcttctccatatttgattctgctatagccaggtctgatgtgaaaattctt |
207 |
Q |
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| T |
16003328 |
taaaacagtctaaccaaaatatatgatatgaaaattcaatatgaaatctgtcttctccataattgattctgctatagccaggtatgatgtgaaaattctt |
16003427 |
T |
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| Q |
208 |
tcaagcaacttcaaatggcagaaaaggataccagtttatccta |
250 |
Q |
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| T |
16003428 |
tcaagcagcttcaaatggtagaaaatgataccagtttatccta |
16003470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 32 - 250
Target Start/End: Original strand, 26794489 - 26794707
Alignment:
| Q |
32 |
tcctttttaattaaaattaaaaagcatatcttttgttttnnnnnnnnnnnnnntctgtcttcttttatttatttttctgaaacagtctaaccaaaatata |
131 |
Q |
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| T |
26794489 |
tcctttttaattaaaattaaaaagcatatcttttgtttaaaaaaaaaataaaatttgtcttcttttctttctttttctgaaacaatctaaccaaaatata |
26794588 |
T |
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| Q |
132 |
tgatatgaaaattcaatatgaaatc-gtcttctccatatttgattctgctatagccaggtctgatgtgaaaattctttcaagcaacttcaaatggcagaa |
230 |
Q |
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| T |
26794589 |
tgatatgaaaattcaatatgaaatctgtcttctccatatttgattctgctatagccaggtctgatgtgaaaattcttacaagcagcttcaaatggtag-a |
26794687 |
T |
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| Q |
231 |
aaggataccagtttatccta |
250 |
Q |
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| T |
26794688 |
aaggataccagtttatccta |
26794707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 19397621 - 19397714
Alignment:
| Q |
162 |
ctccatatttgattctgctatagccagg-----tctgatgtgaaaattctttcaagcaacttcaaatggcagaaaaggataccagtttatccta |
250 |
Q |
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| T |
19397621 |
ctccatatttgattctgctatagccacaatgcatctgatatgaaaattctttcaagcagcttcaaatggtagaataagataccaatttatccta |
19397714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 40721439 - 40721677
Alignment:
| Q |
9 |
gattattcttatgtaggttcacttcctttttaattaaaattaaaaagcatatcttttgttttnnnnnnnnnnnnnntctgtcttcttttatttatttttc |
108 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||| |
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| T |
40721439 |
gattattcttatgtaggtttacttcctttttaattaaaattaaaaagcatatcttttgttttaaaaaaaaaata--tatgtcttcttttctttctttttc |
40721536 |
T |
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| Q |
109 |
tgaaacagtctaaccaaaatatatgatat--gaaaattcaatatgaaatc-gtcttctccatatttgattctgctatagccaggtctgatgtgaaaattc |
205 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40721537 |
tgaaacagtctaaccaaaatatatgatatatgaaaattcaatatgaaatctgtcttctccatatttgattctgctatagccaggtcagatgtgaaaattc |
40721636 |
T |
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| Q |
206 |
tttcaagcaacttcaaatggcagaaaaggataccagtttat |
246 |
Q |
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| T |
40721637 |
tttcaagcagcttcaaatggtagaaaaggataacaatttat |
40721677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 5155201 - 5155241
Alignment:
| Q |
199 |
aaaattctttcaagcaacttcaaatggcagaaaaggatacc |
239 |
Q |
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| T |
5155201 |
aaaattctttcaagcaacttcaaatggtagaataagatacc |
5155241 |
T |
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