View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1439_low_18 (Length: 249)

Name: NF1439_low_18
Description: NF1439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1439_low_18
NF1439_low_18
[»] chr1 (31 HSPs)
chr1 (5-238)||(41147210-41147445)
chr1 (113-163)||(43380545-43380595)
chr1 (113-165)||(51465752-51465804)
chr1 (116-163)||(29373965-29374012)
chr1 (115-165)||(39841273-39841323)
chr1 (178-238)||(30856162-30856220)
chr1 (113-165)||(171446-171498)
chr1 (113-165)||(46728722-46728774)
chr1 (179-238)||(39840581-39840640)
chr1 (115-165)||(1743209-1743259)
chr1 (5-63)||(11645730-11645788)
chr1 (113-233)||(36005823-36005943)
chr1 (178-239)||(39025442-39025503)
chr1 (113-165)||(26252813-26252864)
chr1 (113-165)||(39840511-39840563)
chr1 (113-165)||(51466469-51466521)
chr1 (178-233)||(50126384-50126439)
chr1 (113-233)||(39958001-39958122)
chr1 (113-163)||(46046439-46046489)
chr1 (178-238)||(1743952-1744011)
chr1 (179-238)||(7649093-7649153)
chr1 (178-234)||(7649772-7649828)
chr1 (113-165)||(16878746-16878798)
chr1 (113-165)||(19439278-19439330)
chr1 (113-165)||(21081049-21081101)
chr1 (178-226)||(29373204-29373252)
chr1 (206-234)||(36005304-36005332)
chr1 (113-165)||(37910741-37910793)
chr1 (113-165)||(43379770-43379822)
chr1 (113-165)||(46727929-46727981)
chr1 (113-165)||(51994719-51994771)
[»] chr8 (24 HSPs)
chr8 (115-238)||(42093429-42093552)
chr8 (113-165)||(7601715-7601767)
chr8 (113-164)||(30427081-30427132)
chr8 (179-233)||(32637333-32637387)
chr8 (115-165)||(40784809-40784859)
chr8 (113-165)||(11596579-11596631)
chr8 (113-165)||(39529569-39529621)
chr8 (113-238)||(30136651-30136776)
chr8 (113-162)||(35627058-35627107)
chr8 (113-165)||(14446056-14446108)
chr8 (113-165)||(36187188-36187240)
chr8 (113-165)||(39528864-39528916)
chr8 (113-165)||(41723209-41723261)
chr8 (113-162)||(5876148-5876197)
chr8 (204-233)||(24701064-24701093)
chr8 (128-165)||(37321157-37321194)
chr8 (113-165)||(5339868-5339920)
chr8 (178-238)||(7601634-7601694)
chr8 (113-165)||(10499858-10499910)
chr8 (113-165)||(15224752-15224804)
chr8 (113-165)||(24700422-24700474)
chr8 (178-234)||(36186547-36186603)
chr8 (113-165)||(37727102-37727154)
chr8 (178-238)||(41723928-41723988)
[»] chr7 (22 HSPs)
chr7 (113-165)||(37796598-37796650)
chr7 (113-234)||(32497001-32497124)
chr7 (115-238)||(14419392-14419516)
chr7 (113-165)||(41345437-41345489)
chr7 (113-162)||(40193861-40193910)
chr7 (113-165)||(789299-789351)
chr7 (113-165)||(17995850-17995902)
chr7 (113-165)||(21985584-21985636)
chr7 (113-165)||(26828766-26828818)
chr7 (178-234)||(48540675-48540730)
chr7 (179-234)||(41567402-41567457)
chr7 (113-164)||(47723485-47723536)
chr7 (205-235)||(8408085-8408115)
chr7 (204-238)||(37796690-37796724)
chr7 (113-158)||(26829629-26829674)
chr7 (113-165)||(6822605-6822657)
chr7 (113-165)||(11337039-11337091)
chr7 (178-234)||(26585541-26585597)
chr7 (113-165)||(34458856-34458908)
chr7 (137-165)||(35088398-35088426)
chr7 (206-234)||(46196678-46196706)
chr7 (204-236)||(47723410-47723442)
[»] chr5 (15 HSPs)
chr5 (113-165)||(19432549-19432601)
chr5 (113-165)||(40366260-40366312)
chr5 (113-165)||(16899910-16899962)
chr5 (113-238)||(32694705-32694830)
chr5 (114-163)||(3098306-3098355)
chr5 (113-164)||(31558239-31558290)
chr5 (115-165)||(6895206-6895256)
chr5 (113-165)||(3099095-3099147)
chr5 (113-165)||(31559042-31559094)
chr5 (207-238)||(39084245-39084276)
chr5 (207-238)||(40366354-40366385)
chr5 (115-165)||(39084320-39084370)
chr5 (204-233)||(11120302-11120331)
chr5 (206-234)||(19825485-19825513)
chr5 (113-165)||(38914282-38914334)
[»] chr4 (30 HSPs)
chr4 (113-165)||(865416-865468)
chr4 (115-165)||(54110489-54110539)
chr4 (113-165)||(29517840-29517892)
chr4 (115-165)||(9170694-9170744)
chr4 (118-164)||(11701690-11701736)
chr4 (113-162)||(39263627-39263676)
chr4 (113-238)||(44876066-44876190)
chr4 (113-165)||(572177-572229)
chr4 (113-165)||(29145243-29145295)
chr4 (186-238)||(47864564-47864616)
chr4 (186-238)||(52477719-52477771)
chr4 (204-239)||(4730658-4730693)
chr4 (180-239)||(24573795-24573854)
chr4 (178-233)||(53534958-53535013)
chr4 (204-234)||(572106-572136)
chr4 (113-163)||(6056410-6056460)
chr4 (114-164)||(38658508-38658558)
chr4 (179-233)||(46620173-46620227)
chr4 (115-164)||(866279-866328)
chr4 (113-236)||(6711048-6711172)
chr4 (204-233)||(16836306-16836335)
chr4 (113-165)||(29144855-29144907)
chr4 (199-236)||(42712065-42712102)
chr4 (116-165)||(42712140-42712189)
chr4 (178-234)||(29144786-29144841)
chr4 (113-165)||(38657828-38657880)
chr4 (199-235)||(42711518-42711554)
chr4 (113-165)||(48615226-48615278)
chr4 (113-165)||(51162918-51162970)
chr4 (115-159)||(53119583-53119627)
[»] chr3 (32 HSPs)
chr3 (113-165)||(54280853-54280905)
chr3 (114-165)||(54295102-54295153)
chr3 (113-234)||(31090674-31090795)
chr3 (113-236)||(11058378-11058499)
chr3 (113-165)||(4996371-4996423)
chr3 (113-165)||(21103610-21103662)
chr3 (113-165)||(42489286-42489338)
chr3 (113-164)||(43656221-43656272)
chr3 (113-160)||(53427408-53427455)
chr3 (114-164)||(41354414-41354464)
chr3 (113-162)||(42121747-42121796)
chr3 (113-158)||(53427978-53428023)
chr3 (115-163)||(42488454-42488502)
chr3 (113-165)||(44706911-44706963)
chr3 (113-165)||(54281704-54281756)
chr3 (180-235)||(21102671-21102726)
chr3 (179-234)||(41780331-41780386)
chr3 (187-238)||(43655413-43655464)
chr3 (179-234)||(53427907-53427962)
chr3 (207-238)||(54281624-54281655)
chr3 (179-233)||(4996834-4996888)
chr3 (186-236)||(25166681-25166731)
chr3 (113-234)||(44707487-44707608)
chr3 (115-165)||(48045648-48045698)
chr3 (128-165)||(23142821-23142858)
chr3 (204-233)||(31091270-31091299)
chr3 (113-162)||(43631220-43631269)
chr3 (113-165)||(23485500-23485552)
chr3 (179-235)||(25913294-25913350)
chr3 (113-157)||(41354792-41354836)
chr3 (113-165)||(41780401-41780453)
chr3 (113-165)||(44878995-44879047)
[»] chr2 (19 HSPs)
chr2 (113-165)||(2075674-2075726)
chr2 (113-164)||(39233938-39233989)
chr2 (113-163)||(44075836-44075886)
chr2 (178-235)||(11735722-11735779)
chr2 (113-165)||(3834927-3834979)
chr2 (113-165)||(5429050-5429102)
chr2 (113-165)||(16011366-16011418)
chr2 (113-165)||(18234191-18234243)
chr2 (114-160)||(914381-914427)
chr2 (178-235)||(19281793-19281850)
chr2 (206-239)||(28783899-28783932)
chr2 (113-165)||(5429803-5429855)
chr2 (113-165)||(15994487-15994539)
chr2 (117-164)||(2215046-2215093)
chr2 (113-163)||(4069609-4069659)
chr2 (113-234)||(28784754-28784875)
chr2 (113-233)||(26240953-26241073)
chr2 (113-165)||(8873686-8873738)
chr2 (113-165)||(26882744-26882796)
[»] chr6 (7 HSPs)
chr6 (119-238)||(3184691-3184808)
chr6 (116-165)||(544343-544392)
chr6 (114-164)||(2812504-2812554)
chr6 (204-233)||(477013-477042)
chr6 (113-165)||(477656-477708)
chr6 (113-165)||(1175109-1175161)
chr6 (113-165)||(32403976-32404028)
[»] scaffold0785 (1 HSPs)
scaffold0785 (113-164)||(1578-1629)
[»] scaffold0141 (1 HSPs)
scaffold0141 (186-236)||(10381-10431)
[»] scaffold0187 (1 HSPs)
scaffold0187 (113-165)||(28284-28336)


Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 41147445 - 41147210
Alignment:
Q  5 ttatagtacacctccaactaaccctattcataacaagttatgattcttagacccttttactcacaaattaccatttaaattatatcatcatataaagaaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41147445 ttatagtacacctccaactaaccctattcataacaagttatgattcttagacccttttactcacaaattaccagttaaattatatcatcatataaagaaa 41147346  T
Q  105 t-nnnnnnngcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcccgat-nnnnnnnnnctttgaaatacatctctataaaaaa 202  Q
    |        ||||||||||||||||||| | ||||||||||  |||||||||||||||| ||| |          |||||||||||||||||||||||||    
T  41147345 taaaaaaaggcttaaatatgataatcgtccttgtaatttgggccagttttgattttcgttccggtaaaaaaaaaactttgaaatacatctctataaaaaa 41147246  T
Q  203 gtttttgtttgaaaaaggtccctgaccccacttcat 238  Q
      ||||||||||||||||||||||||||||||||||    
T  41147245 aattttgtttgaaaaaggtccctgaccccacttcat 41147210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 43380595 - 43380545
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtc 163  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43380595 gcttaaatatgataatcgtccctgtaatttggatcagttttgattttcgtc 43380545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 51465752 - 51465804
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  51465752 gcttaaatatgataatagtccctgtaatttggatcagttttgattttcgtccc 51465804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 29374012 - 29373965
Alignment:
Q  116 taaatatgataatcgttcctgtaatttggatcagttttgattttcgtc 163  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||    
T  29374012 taaatatgataatcgtccttgtaatttggatcagttttgattttcgtc 29373965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 39841323 - 39841273
Alignment:
Q  115 ttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  39841323 ttaaatatgataatcgtccctgtaatttggtccagttttgattttcgtccc 39841273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 30856162 - 30856220
Alignment:
Q  178 ctttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccacttcat 238  Q
    |||||||||||||| ||||||||||  ||  ||||||||||||||||||||||||||||||    
T  30856162 ctttgaaatacatccctataaaaaaaatt--gtttgaaaaaggtccctgaccccacttcat 30856220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 171498 - 171446
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||||||||  ||||||||||  ||||||||||||||||||||    
T  171498 gcttaaatatgataatcgtctctgtaatttgagtcagttttgattttcgtccc 171446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 46728774 - 46728722
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||||||||  ||||| ||||| ||||||||||||||||||||    
T  46728774 gcttaaatatgataatcgtcactgtagtttgggtcagttttgattttcgtccc 46728722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 39840581 - 39840640
Alignment:
Q  179 tttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccacttcat 238  Q
    ||||||||||||| || ||||    |||||||||||||||||||||||||||||||||||    
T  39840581 tttgaaatacatccctgtaaatttttttttgtttgaaaaaggtccctgaccccacttcat 39840640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 1743209 - 1743259
Alignment:
Q  115 ttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||| ||| |||||| | ||||||||||||||||||||    
T  1743209 ttaaatatgataatcgtccctataatttagttcagttttgattttcgtccc 1743259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 11645730 - 11645788
Alignment:
Q  5 ttatagtacacctccaactaaccctattcataacaagttatgattcttagaccctttta 63  Q
    ||||||||||||||  ||||||| |||||||||||| |||| ||||||||| |||||||    
T  11645730 ttatagtacacctctgactaaccatattcataacaaattataattcttagagcctttta 11645788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 233
Target Start/End: Complemental strand, 36005943 - 36005823
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcccgatnnnnnnnnnctttgaaatacatctctataaaaaagtttttgttt 212  Q
    |||||||||||||| | || | ||| ||||||||||||||||| |||||||| |           ||||||| ||||||||||||||    |||||||||    
T  36005943 gcttaaatatgatattagtccatgtgatttggatcagttttgaatttcgtcctgtaaaaaaaaaactttgaattacatctctataaattcttttttgttt 36005844  T
Q  213 gaaaaaggtccctgaccccac 233  Q
    |||||||||||||| ||||||    
T  36005843 gaaaaaggtccctggccccac 36005823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 39025442 - 39025503
Alignment:
Q  178 ctttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccacttcatc 239  Q
    |||||||||||||| ||  |||||  ||||||||||||||||||||||| || |||||||||    
T  39025442 ctttgaaatacatccctgcaaaaatttttttgtttgaaaaaggtccctggccacacttcatc 39025503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 26252864 - 26252813
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||||| || |||||||||||  ||||||||||||||||||||    
T  26252864 gcttaaatatgataattgt-cctgtaatttgagtcagttttgattttcgtccc 26252813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 39840511 - 39840563
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||| | | |||||||| | ||||||||||||||||||||    
T  39840511 gcttaaatatgataatcatccatgtaattttggtcagttttgattttcgtccc 39840563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 51466521 - 51466469
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||||| | | |||||| | ||||||||||||||||||||    
T  51466521 gcttaaatatgataatcgtccttataatttaggtcagttttgattttcgtccc 51466469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 50126439 - 50126384
Alignment:
Q  178 ctttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccac 233  Q
    ||||||| |||||| || ||||||| ||||||||||||||||||| ||| ||||||    
T  50126439 ctttgaattacatccctgtaaaaaattttttgtttgaaaaaggtcactggccccac 50126384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 39958001 - 39958122
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcccgat-nnnnnnnnnctttgaaatacatctctataaaaaagtttttgtt 211  Q
    |||||||||||||| | || |||||||||||| || ||||||| ||||||||| ||          ||||||| |||||| || |||||||   ||||||    
T  39958001 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccctataaaaaaaaaactttgaattacatccctgtaaaaaaaaatttgtt 39958100  T
Q  212 tgaaaaaggtccctgaccccac 233  Q
    ||||||||||||||| ||||||    
T  39958101 tgaaaaaggtccctggccccac 39958122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 46046439 - 46046489
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtc 163  Q
    |||||||||||||||||||   |||||||||| ||||||||||||| ||||    
T  46046439 gcttaaatatgataatcgtcgttgtaatttggctcagttttgatttccgtc 46046489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 1744011 - 1743952
Alignment:
Q  178 ctttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccacttcat 238  Q
    |||||||||||||| |||||||    |||||||||||||| |||| |||||||||||||||    
T  1744011 ctttgaaatacatccctataaattt-tttttgtttgaaaatggtcgctgaccccacttcat 1743952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 7649093 - 7649153
Alignment:
Q  179 tttgaaatacatctctataaaaaagtt-tttgtttgaaaaaggtccctgaccccacttcat 238  Q
    |||||||||||||||| |||||||    ||||||||||||||||| ||| |||||||||||    
T  7649093 tttgaaatacatctctgtaaaaaaaaaatttgtttgaaaaaggtctctgtccccacttcat 7649153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 7649828 - 7649772
Alignment:
Q  178 ctttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccact 234  Q
    |||||||||||||| || |||||||  ||||||||||||||| || ||| |||||||    
T  7649828 ctttgaaatacatccctgtaaaaaatattttgtttgaaaaagatctctggccccact 7649772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 16878746 - 16878798
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  |||| ||||||||||| | | |||||||||||||||||    
T  16878746 gcttaaatatgattttcgtccctgtaatttgaacccgttttgattttcgtccc 16878798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 19439330 - 19439278
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  |||||| ||||||||||  | |||||||||||||||||    
T  19439330 gcttaaatatgattttcgttcttgtaatttgggcccgttttgattttcgtccc 19439278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 21081101 - 21081049
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||| | || |||||||||||| |||||||| | |||||||||    
T  21081101 gcttaaatatgatattagtccctgtaatttgggtcagttttaaatttcgtccc 21081049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 29373204 - 29373252
Alignment:
Q  178 ctttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctg 226  Q
    |||||||||||||| || |||||||   |||||||||||||||||||||    
T  29373204 ctttgaaatacatccctgtaaaaaaaaatttgtttgaaaaaggtccctg 29373252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 36005304 - 36005332
Alignment:
Q  206 tttgtttgaaaaaggtccctgaccccact 234  Q
    |||||||||||||||||||||||||||||    
T  36005304 tttgtttgaaaaaggtccctgaccccact 36005332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 37910793 - 37910741
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||| ||  |||| || |||||||||||| |||||||||||||||||    
T  37910793 gcttaaatatcattttcgtccccgtaatttggatccgttttgattttcgtccc 37910741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 43379770 - 43379822
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||| ||| ||||||||||    |||||||||||||||||||    
T  43379770 gcttaaatatgataaacgtccctgtaatttttgacagttttgattttcgtccc 43379822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 46727929 - 46727981
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||||| ||  ||| |||||||  |||||||||||||||||||    
T  46727929 gcttaaatatgataatagtcactggaatttgggacagttttgattttcgtccc 46727981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 51994771 - 51994719
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  |||| | |||||||||| ||| ||||||||||||||||    
T  51994771 gcttaaatatgatgttcgtacttgtaatttgggtcaattttgattttcgtccc 51994719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 42093429 - 42093552
Alignment:
Q  115 ttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcccgatnnnnnnnnnctttgaaatacatctctataaaaaagtttttgtttga 214  Q
    ||||||||||||||||| ||||||||||| | |||||||||||||||||||  |         ||||||||||||||||| |||||||    ||||||||    
T  42093429 ttaaatatgataatcgtccctgtaatttgaaccagttttgattttcgtccctgtaaaaaaaaactttgaaatacatctctgtaaaaaaaaaattgtttga 42093528  T
Q  215 aaaaggtccctgaccccacttcat 238  Q
    ||||||||||||||||||||||||    
T  42093529 aaaaggtccctgaccccacttcat 42093552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 7601767 - 7601715
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  7601767 gcttaaatatgataatcgtccctgtaatttgggccagttttgattttcgtccc 7601715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 30427081 - 30427132
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcc 164  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||||||||||    
T  30427081 gcttaaatatgataatcgtccctgtaatttggttcagtttttattttcgtcc 30427132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 32637333 - 32637387
Alignment:
Q  179 tttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccac 233  Q
    ||||||| |||||||| |||||||  |||||||||||||||||||||||||||||    
T  32637333 tttgaaaaacatctctgtaaaaaaaattttgtttgaaaaaggtccctgaccccac 32637387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 40784809 - 40784859
Alignment:
Q  115 ttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  40784809 ttaaatatgataatcgtccctgtaatttggtccagttttgattttcgtccc 40784859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 11596631 - 11596579
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||| |||||| || |||||||||| |||||||||||||||||||    
T  11596631 gcttaaatatgagaatcgtcccagtaatttggaccagttttgattttcgtccc 11596579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 39529621 - 39529569
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  | || |||||||||||||||||||||||||||||||||    
T  39529621 gcttaaatatgatttttgtccctgtaatttggatcagttttgattttcgtccc 39529569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 238
Target Start/End: Complemental strand, 30136776 - 30136651
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcccgatnnnnnnnnnctttgaaatacatctctataaaaaagtttttgttt 212  Q
    ||||||||||||||||||| | ||||||||| | || ||||||||||  ||||  |         |||||||||||||| || |||||||    ||||||    
T  30136776 gcttaaatatgataatcgtccatgtaatttgaaccaattttgatttttatccctgtaaaaaaaaactttgaaatacatccctgtaaaaaaaaaattgttt 30136677  T
Q  213 gaaaaaggtccctgaccccacttcat 238  Q
    ||||||||||| ||||||||||||||    
T  30136676 gaaaaaggtccatgaccccacttcat 30136651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 35627107 - 35627058
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgt 162  Q
    ||||||| |||||  |||| ||||||||||||||||||||||||||||||    
T  35627107 gcttaaacatgattttcgtccctgtaatttggatcagttttgattttcgt 35627058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 14446108 - 14446056
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||||| ||||||||||||  || ||||||||||| ||||    
T  14446108 gcttaaatatgataatcgtccctgtaatttgggccaattttgattttcatccc 14446056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 36187240 - 36187188
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  |||| |||||||||| ||||||||||||||||| ||||    
T  36187240 gcttaaatatgattttcgtccctgtaatttagatcagttttgattttcatccc 36187188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 39528864 - 39528916
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  |||| |||||||||||| |||||||||||||| |||||    
T  39528864 gcttaaatatgattttcgtccctgtaatttgggtcagttttgatttttgtccc 39528916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 41723209 - 41723261
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||||| ||||||||||||   ||||||||||| ||||||    
T  41723209 gcttaaatatgataatcgtccctgtaatttggtcaagttttgatttccgtccc 41723261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 5876197 - 5876148
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgt 162  Q
    |||||||||||||  | |||||| ||||||||| ||||||||||||||||    
T  5876197 gcttaaatatgatttttgttcctctaatttggaccagttttgattttcgt 5876148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 24701093 - 24701064
Alignment:
Q  204 tttttgtttgaaaaaggtccctgaccccac 233  Q
    ||||||||||||||||||||||||||||||    
T  24701093 tttttgtttgaaaaaggtccctgaccccac 24701064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 37321157 - 37321194
Alignment:
Q  128 tcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  37321157 tcgttgctgtaatttcgatcagttttgattttcgtccc 37321194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 5339868 - 5339920
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||| | || |||||||||||| || ||||||| |||||||||    
T  5339868 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccc 5339920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 7601694 - 7601634
Alignment:
Q  178 ctttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccacttcat 238  Q
    |||||||||||||| || |||||||    |||||||||||||||| ||| |||||||||||    
T  7601694 ctttgaaatacatccctgtaaaaaaaaaattgtttgaaaaaggtctctggccccacttcat 7601634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 10499858 - 10499910
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||| | || |||||||||||| || ||||||| |||||||||    
T  10499858 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccc 10499910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 15224752 - 15224804
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  |||| ||||||||||||  | |||||||||||||||||    
T  15224752 gcttaaatatgattttcgtccctgtaatttgggcccgttttgattttcgtccc 15224804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 24700422 - 24700474
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||| | || |||||||||||| || ||||||| |||||||||    
T  24700422 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccc 24700474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 36186547 - 36186603
Alignment:
Q  178 ctttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccact 234  Q
    |||||||| ||||||||||||||||    |||||||||||||||| ||| |||||||    
T  36186547 ctttgaaaaacatctctataaaaaaaaaattgtttgaaaaaggtctctggccccact 36186603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 37727102 - 37727154
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  |||| | |||||||| || |||||||||||||||||||    
T  37727102 gcttaaatatgattttcgtccatgtaatttagaccagttttgattttcgtccc 37727154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 41723988 - 41723928
Alignment:
Q  178 ctttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccacttcat 238  Q
    |||||||||||||| || |||||||  ||||  |||||||||||| ||| |||||||||||    
T  41723988 ctttgaaatacatccctgtaaaaaaaattttaattgaaaaaggtctctggccccacttcat 41723928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 37796598 - 37796650
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  37796598 gcttaaatatgataatcgtccctgtaatttgggtcagttttgattttcgtccc 37796650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 32497001 - 32497124
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc--gatnnnnnnnnnctttgaaatacatctctataaaaaagtttttgt 210  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||| ||||   |          |||||||||| ||| || |||||   |||||||    
T  32497001 gcttaaatatgataattgttcctgtaatttgggtcagttttgattttcatccctgtaaaaaaaaaaactttgaaatatatccctgtaaaattatttttgt 32497100  T
Q  211 ttgaaaaaggtccctgaccccact 234  Q
    ||||||||||||||||||||||||    
T  32497101 ttgaaaaaggtccctgaccccact 32497124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 14419392 - 14419516
Alignment:
Q  115 ttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc-gatnnnnnnnnnctttgaaatacatctctataaaaaagtttttgtttg 213  Q
    ||||||||||||||||| |||||| |||||  ||||||||||||||||||| |           |||||||||||||| || |||||||   ||||||||    
T  14419392 ttaaatatgataatcgtccctgtattttggggcagttttgattttcgtccctgtaaaaaaagaactttgaaatacatccctgtaaaaaaaaatttgtttg 14419491  T
Q  214 aaaaaggtccctgaccccacttcat 238  Q
    |||||||| |||| |||||||||||    
T  14419492 aaaaaggttcctggccccacttcat 14419516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 41345489 - 41345437
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||||| ||| ||||||||  |||||||||||||||||||    
T  41345489 gcttaaatatgataatcgtccctataatttggtccagttttgattttcgtccc 41345437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 40193861 - 40193910
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgt 162  Q
    |||||||||||||||||||  ||||||||||| ||| |||||||||||||    
T  40193861 gcttaaatatgataatcgtcgctgtaatttgggtcaattttgattttcgt 40193910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 789299 - 789351
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  |||| |||||||||||| ||||||||||||||| ||||    
T  789299 gcttaaatatgattttcgtccctgtaatttgggtcagttttgattttcatccc 789351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 17995850 - 17995902
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  |||| |||||||||||| ||| ||||||||||||||||    
T  17995850 gcttaaatatgattttcgtccctgtaatttgggtcaattttgattttcgtccc 17995902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 21985636 - 21985584
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  |||| ||||||||||||| | |||||||||||||||||    
T  21985636 gcttaaatatgattttcgtccctgtaatttggacccgttttgattttcgtccc 21985584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 26828766 - 26828818
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||||| || ||||||||||||  |||||||||||||| ||||    
T  26828766 gcttaaatatgataattgtccctgtaatttggtccagttttgattttcttccc 26828818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 48540730 - 48540675
Alignment:
Q  178 ctttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccact 234  Q
    ||||||| |||||| || ||||||| ||||||||||||||||||||||| |||||||    
T  48540730 ctttgaattacatc-ctgtaaaaaattttttgtttgaaaaaggtccctggccccact 48540675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 41567402 - 41567457
Alignment:
Q  179 tttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccact 234  Q
    ||||||| ||||| || ||||||| ||||||||||||||||||| ||| |||||||    
T  41567402 tttgaaaaacatccctgtaaaaaattttttgtttgaaaaaggtctctggccccact 41567457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 47723536 - 47723485
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcc 164  Q
    |||||||||||||  |||| ||| ||||||||| ||||||||||||||||||    
T  47723536 gcttaaatatgattttcgtccctataatttggaccagttttgattttcgtcc 47723485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 235
Target Start/End: Original strand, 8408085 - 8408115
Alignment:
Q  205 ttttgtttgaaaaaggtccctgaccccactt 235  Q
    |||||||||||||||||||||||||||||||    
T  8408085 ttttgtttgaaaaaggtccctgaccccactt 8408115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 37796690 - 37796724
Alignment:
Q  204 tttttgtttgaaaaaggtccctgaccccacttcat 238  Q
    ||||||||||||||||||||||| |||||||||||    
T  37796690 tttttgtttgaaaaaggtccctgtccccacttcat 37796724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 26829674 - 26829629
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattt 158  Q
    ||||||||||||||||||| |||||||||| |  ||||||||||||    
T  26829674 gcttaaatatgataatcgtccctgtaatttagtccagttttgattt 26829629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 6822605 - 6822657
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||||| || ||||||||||||   ||||||| ||||||||||    
T  6822605 gcttaaatatgataattgtccctgtaatttggtcaagttttggttttcgtccc 6822657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 11337039 - 11337091
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||| | ||||||| ||||||| || ||||||| |||||||||    
T  11337039 gcttaaatatgatattagttcctgcaatttgggtcggttttgaatttcgtccc 11337091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 26585541 - 26585597
Alignment:
Q  178 ctttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccact 234  Q
    ||||||| |||||| || |||||||  |||||||||||||||||| ||| |||||||    
T  26585541 ctttgaattacatccctgtaaaaaaaattttgtttgaaaaaggtctctggccccact 26585597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 34458908 - 34458856
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||| |  || |||||||| ||| ||||||||||||||||    
T  34458908 gcttaaatatgataatcatctctataatttggttcaattttgattttcgtccc 34458856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 35088398 - 35088426
Alignment:
Q  137 taatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||||||||||||||||||    
T  35088398 taatttggatcagttttgattttcgtccc 35088426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 46196706 - 46196678
Alignment:
Q  206 tttgtttgaaaaaggtccctgaccccact 234  Q
    |||||||||||||||||||||||||||||    
T  46196706 tttgtttgaaaaaggtccctgaccccact 46196678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 47723442 - 47723410
Alignment:
Q  204 tttttgtttgaaaaaggtccctgaccccacttc 236  Q
    ||||| |||||||||||||||||||||||||||    
T  47723442 tttttatttgaaaaaggtccctgaccccacttc 47723410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 19432601 - 19432549
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  19432601 gcttaaatatgataatcgttcctgtaatttggttcagttttgatttttgtccc 19432549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 40366260 - 40366312
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  40366260 gcttaaatatgataatcgtccctgtaatttgggtcagttttgattttcgtccc 40366312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 16899910 - 16899962
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  16899910 gcttaaatatgataatcgtccctgtaatttggtccagttttgattttcgtccc 16899962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 238
Target Start/End: Complemental strand, 32694830 - 32694705
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcccgatnnnnnnnnnctttgaaatacatctctataaaaaagtttttgttt 212  Q
    ||||||||||||||||||  |||||| |||||  ||||||||||||||||| |  |         | |||||||||||| || |||||||    ||||||    
T  32694830 gcttaaatatgataatcgcccctgtagtttgggccagttttgattttcgtctctttaaaaaaaaacattgaaatacatccctgtaaaaaaaaaattgttt 32694731  T
Q  213 gaaaaaggtccctgaccccacttcat 238  Q
    ||||||||||||||||||||||||||    
T  32694730 gaaaaaggtccctgaccccacttcat 32694705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 3098306 - 3098355
Alignment:
Q  114 cttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtc 163  Q
    |||||||||||||||||| |||||||||| | ||||||||||||||||||    
T  3098306 cttaaatatgataatcgtccctgtaatttaggtcagttttgattttcgtc 3098355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 31558239 - 31558290
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcc 164  Q
    |||||||||||||||||||  ||||||||||  |||||||||||||||||||    
T  31558239 gcttaaatatgataatcgtcactgtaatttgagtcagttttgattttcgtcc 31558290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 6895256 - 6895206
Alignment:
Q  115 ttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||| | ||||||||||  |||||||||||||||||||    
T  6895256 ttaaatatgataatcgtccttgtaatttggtccagttttgattttcgtccc 6895206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 3099147 - 3099095
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||||| | ||||||||||  ||||||| |||||||||||    
T  3099147 gcttaaatatgataatcgtccatgtaatttggtccagttttaattttcgtccc 3099095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 31559094 - 31559042
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||||||||  ||||||||| |  |||||||||||||||||||    
T  31559094 gcttaaatatgataatcgtcactgtaattttggccagttttgattttcgtccc 31559042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 238
Target Start/End: Complemental strand, 39084276 - 39084245
Alignment:
Q  207 ttgtttgaaaaaggtccctgaccccacttcat 238  Q
    ||||||||||||||||||||||||||||||||    
T  39084276 ttgtttgaaaaaggtccctgaccccacttcat 39084245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 238
Target Start/End: Original strand, 40366354 - 40366385
Alignment:
Q  207 ttgtttgaaaaaggtccctgaccccacttcat 238  Q
    ||||||||||||||||||||||||||||||||    
T  40366354 ttgtttgaaaaaggtccctgaccccacttcat 40366385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 39084370 - 39084320
Alignment:
Q  115 ttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||| ||| ||||||||  || ||||||||||||||||    
T  39084370 ttaaatatgataatcgtccctctaatttgggccaattttgattttcgtccc 39084320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 11120302 - 11120331
Alignment:
Q  204 tttttgtttgaaaaaggtccctgaccccac 233  Q
    ||||||||||||||||||||||||||||||    
T  11120302 tttttgtttgaaaaaggtccctgaccccac 11120331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 19825513 - 19825485
Alignment:
Q  206 tttgtttgaaaaaggtccctgaccccact 234  Q
    |||||||||||||||||||||||||||||    
T  19825513 tttgtttgaaaaaggtccctgaccccact 19825485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 38914334 - 38914282
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  |||| ||| |||||| || |||||||||||||||||||    
T  38914334 gcttaaatatgattttcgtccctataatttagaccagttttgattttcgtccc 38914282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 865416 - 865468
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||| | |||||||||||| ||||||||||||||||||||    
T  865416 gcttaaatatgataatcatccctgtaatttgggtcagttttgattttcgtccc 865468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 54110539 - 54110489
Alignment:
Q  115 ttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||||||||    
T  54110539 ttaaatatgataatcgtccctgtaatttgtttcagttttgattttcgtccc 54110489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 29517892 - 29517840
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||| |||||||||||||| |||||||||||| ||| ||||||||||||||||    
T  29517892 gctttaatatgataatcgtccctgtaatttggttcaattttgattttcgtccc 29517840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 9170744 - 9170694
Alignment:
Q  115 ttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||||| |||| |||||  |||||||||||||||||||    
T  9170744 ttaaatatgataatcgttcttgtattttggtccagttttgattttcgtccc 9170694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 11701736 - 11701690
Alignment:
Q  118 aatatgataatcgttcctgtaatttggatcagttttgattttcgtcc 164  Q
    ||||| |||||||| ||||||||||||| ||||||||||||||||||    
T  11701736 aatattataatcgtccctgtaatttggaccagttttgattttcgtcc 11701690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 39263627 - 39263676
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgt 162  Q
    |||||||||||||  |||| ||||||||||||| ||||||||||||||||    
T  39263627 gcttaaatatgattttcgtccctgtaatttggaccagttttgattttcgt 39263676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 238
Target Start/End: Original strand, 44876066 - 44876190
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcccgatnnnnnnnnnctttgaaatacatctctataaaaaagtttttgttt 212  Q
    |||||||||||||||| |||| |||||||||| ||||||||| ||||||| ||  |         |||||||||||||| || |||||||    ||||||    
T  44876066 gcttaaatatgataattgttcttgtaatttgggtcagttttgcttttcgttcctgtaaaaaaaa-ctttgaaatacatccctgtaaaaaaaaaattgttt 44876164  T
Q  213 gaaaaaggtccctgaccccacttcat 238  Q
    |||||||||| ||| |||||||||||    
T  44876165 gaaaaaggtctctggccccacttcat 44876190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 572229 - 572177
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||||| || ||| ||||||||  |||||||||||||||||||    
T  572229 gcttaaatatgataattgtccctataatttggtccagttttgattttcgtccc 572177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 29145295 - 29145243
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||||| ||||||||||||   | ||||||||||||||||    
T  29145295 gcttaaatatgataatcgtccctgtaatttggtcaaattttgattttcgtccc 29145243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 47864564 - 47864616
Alignment:
Q  186 tacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccacttcat 238  Q
    |||||| || ||||||| ||||||||| ||||||||||||| |||||||||||    
T  47864564 tacatccctgtaaaaaaatttttgttttaaaaaggtccctggccccacttcat 47864616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 52477719 - 52477771
Alignment:
Q  186 tacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccacttcat 238  Q
    |||||| || ||||||| ||||||||| ||||||||||||| |||||||||||    
T  52477719 tacatccctgtaaaaaaatttttgttttaaaaaggtccctggccccacttcat 52477771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 239
Target Start/End: Original strand, 4730658 - 4730693
Alignment:
Q  204 tttttgtttgaaaaaggtccctgaccccacttcatc 239  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4730658 tttttgtttgaaaaaggtctctgaccccacttcatc 4730693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 24573795 - 24573854
Alignment:
Q  180 ttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccacttcatc 239  Q
    |||||||||||| ||  ||||||   ||||||||||||||||||||| ||||||||||||    
T  24573795 ttgaaatacatccctgcaaaaaaaaatttgtttgaaaaaggtccctggccccacttcatc 24573854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 53534958 - 53535013
Alignment:
Q  178 ctttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccac 233  Q
    ||||||| |||||| || |||||||   ||||||||||||||||||||||||||||    
T  53534958 ctttgaattacatccctgtaaaaaaaaatttgtttgaaaaaggtccctgaccccac 53535013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Complemental strand, 572136 - 572106
Alignment:
Q  204 tttttgtttgaaaaaggtccctgaccccact 234  Q
    |||||||||||||||||||||||||||||||    
T  572136 tttttgtttgaaaaaggtccctgaccccact 572106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 6056410 - 6056460
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtc 163  Q
    ||||||||||||||||||| ||| |||||| |  |||||||||||||||||    
T  6056410 gcttaaatatgataatcgtccctataatttagggcagttttgattttcgtc 6056460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 38658558 - 38658508
Alignment:
Q  114 cttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcc 164  Q
    ||||||||||||| | || ||||||||||||||| ||||||| ||||||||    
T  38658558 cttaaatatgatattagtccctgtaatttggatcggttttgaatttcgtcc 38658508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 46620227 - 46620173
Alignment:
Q  179 tttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccac 233  Q
    ||||||| ||||| ||||||||||   ||||||||||||||||||||| ||||||    
T  46620227 tttgaaaaacatccctataaaaaaaaatttgtttgaaaaaggtccctggccccac 46620173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 866328 - 866279
Alignment:
Q  115 ttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcc 164  Q
    ||||||||||||||||| |||||||||| |   |||||||||||||||||    
T  866328 ttaaatatgataatcgtccctgtaatttagtctagttttgattttcgtcc 866279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 6711172 - 6711048
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc-gatnnnnnnnnnctttgaaatacatctctataaaaaagtttttgtt 211  Q
    |||||||||||||  | || ||||||||||||| ||||||||| ||||||||| ||          |||||||| ||||| || |||||||    |||||    
T  6711172 gcttaaatatgatttttgtccctgtaatttggaccagttttgaatttcgtccctgaaaacaaaaaactttgaaaaacatcactgtaaaaaaaaaattgtt 6711073  T
Q  212 tgaaaaaggtccctgaccccacttc 236  Q
    ||||||||||||||||||| |||||    
T  6711072 tgaaaaaggtccctgaccctacttc 6711048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 16836306 - 16836335
Alignment:
Q  204 tttttgtttgaaaaaggtccctgaccccac 233  Q
    ||||||||||||||||||||||||||||||    
T  16836306 tttttgtttgaaaaaggtccctgaccccac 16836335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 29144907 - 29144855
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatc-agttttgattttcgtccc 165  Q
    ||||||||||||||||||| |||||||||| |||| | ||||||||||||||||    
T  29144907 gcttaaatatgataatcgtccctgtaattt-gatcaaattttgattttcgtccc 29144855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 42712102 - 42712065
Alignment:
Q  199 aaaagtttttgtttgaaaaaggtccctgaccccacttc 236  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  42712102 aaaattttttgtttgaaaaaggtccctggccccacttc 42712065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 42712189 - 42712140
Alignment:
Q  116 taaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||| |||| | ||||||||||| ||||||||||||| |||||    
T  42712189 taaatatgatagtcgtccttgtaatttggaccagttttgatttttgtccc 42712140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 29144841 - 29144786
Alignment:
Q  178 ctttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccact 234  Q
    |||||||||||||| || |||||||    ||||||||||||||||||||||||||||    
T  29144841 ctttgaaatacatccctgtaaaaaa-aaattgtttgaaaaaggtccctgaccccact 29144786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 38657828 - 38657880
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  |||| |||||||||||| |  |||||||||||||||||    
T  38657828 gcttaaatatgattttcgtccctgtaatttgggttcgttttgattttcgtccc 38657880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 42711518 - 42711554
Alignment:
Q  199 aaaagtttttgtttgaaaaaggtccctgaccccactt 235  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  42711518 aaaattttttgtttgaaaaaggtccctggccccactt 42711554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 48615278 - 48615226
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||| |||| | |||||||||||  ||||||||||||| ||||    
T  48615278 gcttaaatatgatattcgtccatgtaatttggacgagttttgattttcatccc 48615226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 51162970 - 51162918
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  |||| | |||||||||| || |||||||||||||||||    
T  51162970 gcttaaatatgattttcgtccttgtaatttgggtccgttttgattttcgtccc 51162918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 53119627 - 53119583
Alignment:
Q  115 ttaaatatgataatcgttcctgtaatttggatcagttttgatttt 159  Q
    ||||||||||||||||||||||||||| |  ||| ||||||||||    
T  53119627 ttaaatatgataatcgttcctgtaattggattcaattttgatttt 53119583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 54280853 - 54280905
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  54280853 gcttaaatatgataatcgtccctgtaatttggtccagttttgattttcgtccc 54280905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 54295153 - 54295102
Alignment:
Q  114 cttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||||||    
T  54295153 cttaaatatgataatcgtccatgtaatttgggtcagttttgattttcgtccc 54295102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 31090674 - 31090795
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcccgatnnnnnnnnnctttgaaatacatctctataaaaaagtttttgttt 212  Q
    |||||||||||||  |||| ||||||||||||| | ||||||||||||||||| ||          ||||||| ||||| || |||||||   |||||||    
T  31090674 gcttaaatatgattttcgtccctgtaatttggacccgttttgattttcgtccctataaaaaaaaagtttgaaaaacatccctctaaaaaaaaatttgttt 31090773  T
Q  213 gaaaaaggtccctgaccccact 234  Q
    |||||||||||||| |||||||    
T  31090774 gaaaaaggtccctggccccact 31090795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 11058499 - 11058378
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcccgatnnnnnnnnnctttgaaatacatctctataaaaaagtttttgttt 212  Q
    |||||||||||||  |||| |||||||||| ||||||||||||||| ||||||  |         |||||||| ||||| ||||||||||    ||||||    
T  11058499 gcttaaatatgattttcgtccctgtaatttagatcagttttgatttccgtccc--tgtaaaaaaactttgaaaaacatccctataaaaaaaaaattgttt 11058402  T
Q  213 gaaaaaggtccctgaccccacttc 236  Q
    |||||||||||||| |||||||||    
T  11058401 gaaaaaggtccctggccccacttc 11058378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 4996371 - 4996423
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||| | ||||||||||||||| |||||||||| |||||||||    
T  4996371 gcttaaatatgatattagttcctgtaatttgggtcagttttgaatttcgtccc 4996423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 21103662 - 21103610
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  |||| ||||||||||||| |||||||||||||||||||    
T  21103662 gcttaaatatgattttcgtccctgtaatttggaccagttttgattttcgtccc 21103610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 42489338 - 42489286
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||||| || | |||||||||| ||||||||||||||||||||    
T  42489338 gcttaaatatgataattgtccttgtaatttgggtcagttttgattttcgtccc 42489286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 43656272 - 43656221
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcc 164  Q
    ||||||||||||||||||| | ||||||||||  ||||||||||||||||||    
T  43656272 gcttaaatatgataatcgtccttgtaatttgggacagttttgattttcgtcc 43656221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 53427408 - 53427455
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttc 160  Q
    |||||||||||||| ||||||||||||||| | |||||||||||||||    
T  53427408 gcttaaatatgatagtcgttcctgtaatttagttcagttttgattttc 53427455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 41354414 - 41354464
Alignment:
Q  114 cttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcc 164  Q
    |||||||||||||||||||   ||||||||||| |||||||||||||||||    
T  41354414 cttaaatatgataatcgtttaagtaatttggataagttttgattttcgtcc 41354464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 42121796 - 42121747
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgt 162  Q
    ||||||||||||||||||| ||| ||||||||| ||||||| ||||||||    
T  42121796 gcttaaatatgataatcgtccctataatttggaccagttttaattttcgt 42121747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 53428023 - 53427978
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattt 158  Q
    |||||||||||||||||||| |||||||||||  ||||||||||||    
T  53428023 gcttaaatatgataatcgtttctgtaatttggtccagttttgattt 53427978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 42488454 - 42488502
Alignment:
Q  115 ttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtc 163  Q
    ||||||||||||||| | |||||||||||  ||||||||||||||||||    
T  42488454 ttaaatatgataatcatccctgtaatttgagtcagttttgattttcgtc 42488502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 44706911 - 44706963
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  |||| |||||||||||| || |||||||||||||||||    
T  44706911 gcttaaatatgattttcgtccctgtaatttgggtccgttttgattttcgtccc 44706963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 54281756 - 54281704
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||||||||||| ||||||  ||  |||||||||||||||    
T  54281756 gcttaaatatgataatcgttcctgttatttgggccaaatttgattttcgtccc 54281704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 21102671 - 21102726
Alignment:
Q  180 ttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccactt 235  Q
    |||||| ||||| || |||||||   ||||||||||||||||||||||||||||||    
T  21102671 ttgaaaaacatccctgtaaaaaaaaatttgtttgaaaaaggtccctgaccccactt 21102726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 41780386 - 41780331
Alignment:
Q  179 tttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccact 234  Q
    ||||||| ||||| ||  |||||| ||||||||||||||||||||||| |||||||    
T  41780386 tttgaaaaacatccctgcaaaaaaatttttgtttgaaaaaggtccctggccccact 41780331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 43655413 - 43655464
Alignment:
Q  187 acatctctataaaaaagtttttgtttgaaaaaggtccctgaccccacttcat 238  Q
    |||||||| |||||||   ||||||||||||||||||||| |||||||||||    
T  43655413 acatctctgtaaaaaaaaatttgtttgaaaaaggtccctggccccacttcat 43655464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 53427962 - 53427907
Alignment:
Q  179 tttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccact 234  Q
    ||||||||||||| || ||| |   |||||||||||||||||||||||||||||||    
T  53427962 tttgaaatacatccctgtaatattttttttgtttgaaaaaggtccctgaccccact 53427907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 238
Target Start/End: Complemental strand, 54281655 - 54281624
Alignment:
Q  207 ttgtttgaaaaaggtccctgaccccacttcat 238  Q
    ||||||||||||||||||||||||||||||||    
T  54281655 ttgtttgaaaaaggtccctgaccccacttcat 54281624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 4996888 - 4996834
Alignment:
Q  179 tttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccac 233  Q
    ||||||| ||||| || |||||||   ||||||||||||||||||||||||||||    
T  4996888 tttgaaaaacatccctgtaaaaaaaaatttgtttgaaaaaggtccctgaccccac 4996834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 25166731 - 25166681
Alignment:
Q  186 tacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccacttc 236  Q
    |||||| || ||||||| ||||||||| ||||||||||||| |||||||||    
T  25166731 tacatccctgtaaaaaaatttttgttttaaaaaggtccctggccccacttc 25166681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 44707608 - 44707487
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcccgatnnnnnnnnnctttgaaatacatctctataaaaaagtttttgttt 212  Q
    |||||||||||||  |||| ||||||||||||| |  ||||||||||||||||  |          ||||||| ||||| || |||||||   |||||||    
T  44707608 gcttaaatatgattttcgtccctgtaatttggacccattttgattttcgtccctgtaaaaaaaaagtttgaaaaacatccctgtaaaaaaaaatttgttt 44707509  T
Q  213 gaaaaaggtccctgaccccact 234  Q
    ||||||||| ||||||||||||    
T  44707508 gaaaaaggttcctgaccccact 44707487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 48045698 - 48045648
Alignment:
Q  115 ttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||||||||||||||||    ||||||||| |||||||    
T  48045698 ttaaatatgataatcgttcctgtaatttggtctcgttttgattgtcgtccc 48045648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 23142821 - 23142858
Alignment:
Q  128 tcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||| || |||||||||||||||||    
T  23142821 tcgttcctgtaatttgggtccgttttgattttcgtccc 23142858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 31091299 - 31091270
Alignment:
Q  204 tttttgtttgaaaaaggtccctgaccccac 233  Q
    ||||||||||||||||||||||||||||||    
T  31091299 tttttgtttgaaaaaggtccctgaccccac 31091270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 43631269 - 43631220
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgt 162  Q
    ||||||||||||||||||| | ||| ||||||  ||||||||||||||||    
T  43631269 gcttaaatatgataatcgtccatgtgatttggtccagttttgattttcgt 43631220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 23485500 - 23485552
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||| | || |||||||||||| || ||||||| |||||||||    
T  23485500 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccc 23485552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 25913350 - 25913294
Alignment:
Q  179 tttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccactt 235  Q
    ||||||| |||||  | ||||| | ||||||||||||||||||| ||||||||||||    
T  25913350 tttgaaaaacatccttgtaaaatattttttgtttgaaaaaggtctctgaccccactt 25913294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 41354836 - 41354792
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgatt 157  Q
    ||||||||||||||||||||| |||| |||||  |||||||||||    
T  41354836 gcttaaatatgataatcgttcatgtactttggtccagttttgatt 41354792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 41780453 - 41780401
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  |||| ||||||||||||| | ||||||||||| |||||    
T  41780453 gcttaaatatgattttcgtccctgtaatttggacccgttttgatttttgtccc 41780401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 44879047 - 44878995
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||| | || |||||||||||| || ||||||| |||||||||    
T  44879047 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccc 44878995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 2075674 - 2075726
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||||| |||||||||| | ||||||||||||||||||||    
T  2075674 gcttaaatatgataatcgtccctgtaatttaggtcagttttgattttcgtccc 2075726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 39233989 - 39233938
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcc 164  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||||||||||    
T  39233989 gcttaaatatgataatcgtccctgtaatttggttcaattttgattttcgtcc 39233938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 44075836 - 44075886
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtc 163  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||||    
T  44075836 gcttaaatatgataatcgtccctgtaatttggtccagttttgattttcgtc 44075886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 11735779 - 11735722
Alignment:
Q  178 ctttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccactt 235  Q
    ||||||||  |||| || |||||||||||||||||||||||||||| |||||||||||    
T  11735779 ctttgaaaatcatccctgtaaaaaagtttttgtttgaaaaaggtccatgaccccactt 11735722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 3834927 - 3834979
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||||| ||||||||||||   ||||||||||||||||||    
T  3834927 gcttaaatatgataatcgtccctgtaatttggtctagttttgattttcgtccc 3834979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 5429050 - 5429102
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||| ||| || |||||||||||| ||||||||||||||||||||    
T  5429050 gcttaaatatgaaaattgtccctgtaatttggttcagttttgattttcgtccc 5429102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 16011366 - 16011418
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||||||| |||||||| |  |||||||||||||||||||    
T  16011366 gcttaaatatgataatcgttcttgtaatttagtccagttttgattttcgtccc 16011418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 18234191 - 18234243
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||| ||||  |||||||||||| |||||||||||||||||||    
T  18234191 gcttaaatatgatattcgtctctgtaatttggaccagttttgattttcgtccc 18234243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 914381 - 914427
Alignment:
Q  114 cttaaatatgataatcgttcctgtaatttggatcagttttgattttc 160  Q
    |||||||||||||||||| |||||||||| | |||||||||||||||    
T  914381 cttaaatatgataatcgtccctgtaatttaggtcagttttgattttc 914427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 19281793 - 19281850
Alignment:
Q  178 ctttgaaatacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccactt 235  Q
    |||||||| ||||| || |||||   ||||||||||||||||||||||||||||||||    
T  19281793 ctttgaaaaacatccctgtaaaactttttttgtttgaaaaaggtccctgaccccactt 19281850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 28783899 - 28783932
Alignment:
Q  206 tttgtttgaaaaaggtccctgaccccacttcatc 239  Q
    ||||||||||||||||||||||||||||||||||    
T  28783899 tttgtttgaaaaaggtccctgaccccacttcatc 28783932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 5429855 - 5429803
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||||| ||| ||||||||  || ||||||||||||||||    
T  5429855 gcttaaatatgataatcgtccctataatttggtccaattttgattttcgtccc 5429803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 15994539 - 15994487
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||||| | | |||||||  ||||||||||||||||||||    
T  15994539 gcttaaatatgataatcgtccatataatttgagtcagttttgattttcgtccc 15994487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 2215093 - 2215046
Alignment:
Q  117 aaatatgataatcgttcctgtaatttggatcagttttgattttcgtcc 164  Q
    |||||| |||||||| ||||||||||||  ||||||||||||||||||    
T  2215093 aaatataataatcgtccctgtaatttgggccagttttgattttcgtcc 2215046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 4069609 - 4069659
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtc 163  Q
    |||||||||||||||| || ||| |||||||| |||||||| |||||||||    
T  4069609 gcttaaatatgataattgtccctataatttgggtcagttttaattttcgtc 4069659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 28784875 - 28784754
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcccgatnnnnnnnnnctttgaaatacatctctataaaaaagtttttgttt 212  Q
    |||||||||| ||||||||  |||||||||||   ||||||||||||||||||  |         |||||||||||||| || |||||   |||||||||    
T  28784875 gcttaaatattataatcgtctctgtaatttggtcaagttttgattttcgtccctgtaaaaaaaaactttgaaatacatccctgtaaaattttttttgttt 28784776  T
Q  213 gaaaaaggtccctgaccccact 234  Q
    ||||| ||||| || |||||||    
T  28784775 gaaaatggtccttggccccact 28784754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 233
Target Start/End: Complemental strand, 26241073 - 26240953
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcccgatnnnnnnnnnctttgaaatacatctctataaaaaagtttttgttt 212  Q
    |||||||||||||| | || |||||||||||| || ||||||| |||||||||  |         ||||||| |||||| || |||||||    ||||||    
T  26241073 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccctgtaaaaaaaaactttgaattacatccctgtaaaaaaaaaattgttt 26240974  T
Q  213 gaaaaaggtccctgaccccac 233  Q
    |||||||||||||| ||||||    
T  26240973 gaaaaaggtccctggccccac 26240953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 8873686 - 8873738
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  |||| ||||||||||||| | ||||| |||||||||||    
T  8873686 gcttaaatatgattttcgtccctgtaatttggacccgttttaattttcgtccc 8873738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 26882796 - 26882744
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  |||| | |||||||||| || |||||||||||||||||    
T  26882796 gcttaaatatgattttcgtccatgtaatttgggtccgttttgattttcgtccc 26882744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 3184691 - 3184808
Alignment:
Q  119 atatgataatcgttcctgtaatttggatcagttttgattttcgtcccgatnnnnnnnnnctttgaaatacatctctataaaaaagtttttgtttgaaaaa 218  Q
    ||||||||||||| |||||||||||||  ||||||||||||||||||  |          ||||||||||||| ||||||||||    ||||||||||||    
T  3184691 atatgataatcgtccctgtaatttggacaagttttgattttcgtccctgtaaaaaaaaa-tttgaaatacatccctataaaaaa-aaattgtttgaaaaa 3184788  T
Q  219 ggtccctgaccccacttcat 238  Q
    |||| |||||||||||||||    
T  3184789 ggtctctgaccccacttcat 3184808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 544343 - 544392
Alignment:
Q  116 taaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    ||||||||||||||||  |||||||||||  |||||||||||||||||||    
T  544343 taaatatgataatcgtctctgtaatttggtccagttttgattttcgtccc 544392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 2812554 - 2812504
Alignment:
Q  114 cttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcc 164  Q
    ||||||||||||  |||| ||| |||||| |||||||||||||||||||||    
T  2812554 cttaaatatgattttcgtccctataatttagatcagttttgattttcgtcc 2812504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 477013 - 477042
Alignment:
Q  204 tttttgtttgaaaaaggtccctgaccccac 233  Q
    ||||||||||||||||||||||||||||||    
T  477013 tttttgtttgaaaaaggtccctgaccccac 477042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 477708 - 477656
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||| | || |||||||||||| || ||||||| |||||||||    
T  477708 gcttaaatatgatattagtccctgtaatttgggtcggttttgaatttcgtccc 477656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 1175161 - 1175109
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  |||| ||||||||||||| | |||||||||||| ||||    
T  1175161 gcttaaatatgattttcgtccctgtaatttggacccgttttgattttcatccc 1175109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 32403976 - 32404028
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||||||  | || ||||||||||||| || ||||||||||||||||    
T  32403976 gcttaaatatgatttttgtccctgtaatttggaccacttttgattttcgtccc 32404028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0785 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 1629 - 1578
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtcc 164  Q
    |||||||||||||| | || ||||||||||||||| ||||||| ||||||||    
T  1629 gcttaaatatgatattagtccctgtaatttggatcggttttgaatttcgtcc 1578  T

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Target: scaffold0141 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 10381 - 10431
Alignment:
Q  186 tacatctctataaaaaagtttttgtttgaaaaaggtccctgaccccacttc 236  Q
    |||||| || ||||||| ||||||||| ||||||||||||| |||||||||    
T  10381 tacatccctgtaaaaaaatttttgttttaaaaaggtccctggccccacttc 10431  T

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Target: scaffold0187 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 28284 - 28336
Alignment:
Q  113 gcttaaatatgataatcgttcctgtaatttggatcagttttgattttcgtccc 165  Q
    |||||||||| ||  |||| || |||||||||||| |||||||||||||||||    
T  28284 gcttaaatatcattttcgtccccgtaatttggatccgttttgattttcgtccc 28336  T

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