View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1439_low_2 (Length: 541)
Name: NF1439_low_2
Description: NF1439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1439_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 9e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 320 - 528
Target Start/End: Complemental strand, 29002426 - 29002216
Alignment:
| Q |
320 |
caaaagaatataatagcttt-aatgaaacacatgcaaaagaacacaacatggttatttcaagaagcaataatagnnnnnnnnn-cgctccataatttttt |
417 |
Q |
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| T |
29002426 |
caaaagaatataatagcttttaatgaaacacatgcaaaagaacacaacatggttatttcaagaagcaataatagttttttttttcgctccataatttttt |
29002327 |
T |
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| Q |
418 |
agtgttggatgacggaaaatttagttgcatgaataatgcatcaatgaaaagacaatataagccaaacaattgagtttaagtggtaaataagttccaacaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29002326 |
agtgttggatgacggaaaatttagttgcatgaataatgcatcaatgaaaagacaatataagccaaacaattgagtttaagtggtaaataagttccaacaa |
29002227 |
T |
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| Q |
518 |
gagatgaatct |
528 |
Q |
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||||||||||| |
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| T |
29002226 |
gagatgaatct |
29002216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 100 - 253
Target Start/End: Complemental strand, 29002646 - 29002493
Alignment:
| Q |
100 |
ggaccaaaacaccacccacagagaaccgccacaaaagcacgattcatgaacaaccctatcattaagccatggtataaacatgaaaccttgactaatcttc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29002646 |
ggaccaaaacaccacccacagagaaccgccacaaaagcacgattcatgaacaaccctatcattaagccatggtataaacatgaaaccttgactaatcttc |
29002547 |
T |
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| Q |
200 |
tccatctctggaagaggcccaaagcccctctaacagacaagacaatcattagag |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29002546 |
tccatctctggaagaggcccaaagcccctctaacagacaagacaatcattagag |
29002493 |
T |
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