View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1439_low_21 (Length: 247)
Name: NF1439_low_21
Description: NF1439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1439_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 29774926 - 29775157
Alignment:
| Q |
1 |
tccaatgatgttgccgagatgagggacgttgttgacgtagggcaacgcgcttgtgatgagcacgttgcgctttccttcaacgggaagcttcggcgctttc |
100 |
Q |
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| T |
29774926 |
tccaatgatgttgccgagatgagggacgttgttgacgtagggcaacgcgcttgtgatgagcacgttgcgctttccttcaacgggaagcttcggcgctttc |
29775025 |
T |
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| Q |
101 |
cgatcttccgtcattttggtgagagtgattgaatctagtttcggtcgccggcgagatgaagaggctccgccgagagagggtagaaaagagagaatgtgag |
200 |
Q |
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| T |
29775026 |
cgatcttccgtcattttggtgagagtgattgaatctagtttcggtcgccggcgagatgaagaggctccgccgagagagggtagaaaagagagaatgtgag |
29775125 |
T |
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| Q |
201 |
cgagggtatgaatgagggtgtatgagtatagc |
232 |
Q |
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| T |
29775126 |
cgagggtatgaatgagggtgtatgagtatagc |
29775157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 50559215 - 50559311
Alignment:
| Q |
1 |
tccaatgatgttgccgagatgagggacgttgttgacgtagggcaacgcgcttgtgatgagcacgttgcgctttccttcaacgggaagcttcggcgct |
97 |
Q |
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| T |
50559215 |
tccaatgatgttgccgagatgaggaacgttgttgacataaggaagtgcacttgtgatgaggatgttccgttttccttccaccggaaccttcgccgct |
50559311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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