View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1439_low_22 (Length: 247)
Name: NF1439_low_22
Description: NF1439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1439_low_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 1464025 - 1464261
Alignment:
| Q |
10 |
aatatcttggaaaacaaggtaggttattttccttttcactttatcatttcgtcacattgttgataaggacaagcctttgtgcaactgtaaggttgtcgac |
109 |
Q |
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| T |
1464025 |
aatatcttggaaaacaaggtaggttattttctttttcactttatcatttcgtcacattgttgataaggacaagcctttgtgcaactgtaaggttgtcgac |
1464124 |
T |
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| Q |
110 |
ttatgttcaaatattggaaataacctatctgtttgcagggataaggccgcgtacatatctaccttgtccatactccgcttgatgatagcctcgtgcactt |
209 |
Q |
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| T |
1464125 |
ttatgttcaaatattggaaataacctatctgtttgcagggataaggccgcgtacatatctaccttgtccatactccgcttgctgatagcctcgtgcactt |
1464224 |
T |
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| Q |
210 |
gcannnnnnnnnccttttatctaattgtttcatatttt |
247 |
Q |
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| T |
1464225 |
gca-ttttttttccttttatctaattgtttcatatttt |
1464261 |
T |
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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 26791741 - 26791937
Alignment:
| Q |
10 |
aatatcttggaaaacaaggtaggttattt--tccttttcactttatcatttcgtcacattgttgataaggacaagcctttgtgcaactgtaaggttgtcg |
107 |
Q |
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| T |
26791741 |
aatattttggaaaacaaggtagattttttatttattttcgctttatcatttggtcac---gttgataaggacgagccttggcgcaactctaaggttgttc |
26791837 |
T |
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| Q |
108 |
acttatgttcaaatattggaaataacctatctgtttgcagggataaggccgcgtacatatctaccttgtccatactccgcttgatgatagcctcgtgcac |
207 |
Q |
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| T |
26791838 |
ac--atgttcaaatattggaaatagtatatctgcttgtagggataaggctgcg---acatctaccttctccgaactcctcttgacgggagcctcgtgcac |
26791932 |
T |
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