View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1439_low_24 (Length: 243)
Name: NF1439_low_24
Description: NF1439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1439_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 63 - 237
Target Start/End: Original strand, 16567278 - 16567452
Alignment:
| Q |
63 |
gttggaaattggtgaaggatagcaatgaaattggtttagaagaaataaaattacgatggctgaagtccatttcttaaccttcttcttccatagtcaaggt |
162 |
Q |
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| T |
16567278 |
gttggaaattggtgaaggatagcaatgaaattggtttagaagaaataaaattacgatggctgaaatccatttgttaaccttcttcttccatagtcaaggt |
16567377 |
T |
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| Q |
163 |
tgaaataagtttgtcatggttgaaataaacagattttgattatggttaaaatcacgaaattggtgtagaagaaat |
237 |
Q |
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| T |
16567378 |
tgaaataagtttgttatggttgaaataaacagattttgattatggttaaaatcatgaaattggtgtagaagaaat |
16567452 |
T |
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Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 63 - 232
Target Start/End: Complemental strand, 7548438 - 7548266
Alignment:
| Q |
63 |
gttggaaattggtgaaggatagcaatgaaattggtttagaagaaataaaattacgatggctgaagtccatttcttaaccttcttcttc---catagtcaa |
159 |
Q |
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| T |
7548438 |
gttggaaattggtgaaggatagcaatgaaattggtttagaagaaataaaatcacgatggctgaaatccgttggttaaccttcttcttcttccatagtcaa |
7548339 |
T |
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| Q |
160 |
ggttgaaataagtttgtcatggttgaaataaacagattttgattatggttaaaatcacgaaattggtgtagaa |
232 |
Q |
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| T |
7548338 |
ggttgaaataagtttgttatggttgaaataaacggattttgattatggttaaaatcacgaaattagtgtagaa |
7548266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 63 - 237
Target Start/End: Complemental strand, 10027020 - 10026843
Alignment:
| Q |
63 |
gttggaaattggtgaaggatagcaatgaaattggtttagaagaaataaaattacgatggctgaagtccatttcttaaccttcttcttc---catagtcaa |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||| ||| ||||||||||||||| ||||||||| |
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| T |
10027020 |
gttggaaattggtgaaggatagcaatgaaattggtttagaagaaataaaatcacggtagctgaaatccgtttgttaaccttcttcttcttccatagtcaa |
10026921 |
T |
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| Q |
160 |
ggttgaaataagtttgtcatggttgaaataaacagattttgattatggttaaaatcacgaaattggtgtagaagaaat |
237 |
Q |
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| T |
10026920 |
ggttgaaataagtttgttatggttgaaataaacggattttgattatggttaaaatctcaaaattggtgtggaagaaat |
10026843 |
T |
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