View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1439_low_26 (Length: 240)
Name: NF1439_low_26
Description: NF1439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1439_low_26 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 89 - 240
Target Start/End: Complemental strand, 26794846 - 26794695
Alignment:
| Q |
89 |
caatttagatggattagcttctagattttccatggagtaagtttttggtttccaacgttattgttggcttctggtattgatgggatccaatatactagtt |
188 |
Q |
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| T |
26794846 |
caatttagatggattagcttctagattttccatggagtaagtttttggtttccaacgttattgttggcttctggtattgatgggatccaatatactagtt |
26794747 |
T |
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| Q |
189 |
gtgacattggcatgttatttgtatactagagacaactcttaggataaactgg |
240 |
Q |
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| T |
26794746 |
gtgacattggcatgttatttgtatactagagacaactcttaggataaactgg |
26794695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 16003659 - 16003458
Alignment:
| Q |
20 |
cattttcctccacaagtcgagtcataccgctatttctgtgttcctctgtattcctctggttctgtccttcaatttagatggattagcttctagattttcc |
119 |
Q |
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| T |
16003659 |
cattttcctccacaagtcgagtcataccgctatttctgtgttcctctgtattcctctggttctgtccttcaatttagatggattagcttctagattttcc |
16003560 |
T |
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| Q |
120 |
atggagtaagtttttggtttccaacgttattgttggcttctggtattgatgggatccaatatactagttgtgacattggcatgttatttgtatactagag |
219 |
Q |
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| T |
16003559 |
atggagtaaatttttggtttccaacgttat-------------------tgggatccaatatactagttgtgacattggcatgttatttatatactagag |
16003479 |
T |
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| Q |
220 |
acaactcttaggataaactgg |
240 |
Q |
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| T |
16003478 |
acaactcttaggataaactgg |
16003458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 26795037 - 26794968
Alignment:
| Q |
22 |
ttttcctccacaagtcgagtcataccgctatttctgtgttcctctgtattcctctggttctgtccttcaa |
91 |
Q |
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| T |
26795037 |
ttttcctccacaagtcgagtcataccgctatttatgtgttcctctgtattcctctggttctgtccttcaa |
26794968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 19397742 - 19397706
Alignment:
| Q |
200 |
atgttatttgtatactagagacaactcttaggataaa |
236 |
Q |
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| T |
19397742 |
atgttatttgtatactagagacatctcttaggataaa |
19397706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 89 - 236
Target Start/End: Complemental strand, 40721820 - 40721673
Alignment:
| Q |
89 |
caatttagatggattagcttctagattttccatggagtaagtttttggtttccaacgttattgttggcttctggtattgatgggatccaatatactagtt |
188 |
Q |
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| T |
40721820 |
caatttagatggattagcttctagattttccacggagtaagtttttggtttccaacattattgttggcttctggtattgatgggatccgatatactagtt |
40721721 |
T |
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| Q |
189 |
gtgacattggcatgttatttgtatactagagacaactcttaggataaa |
236 |
Q |
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| T |
40721720 |
gtgacattggcatgttatttgtatactagagacaactcttagaataaa |
40721673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 40722001 - 40721956
Alignment:
| Q |
22 |
ttttcctccacaagtcgagtcataccgctatttctgtgttcctctg |
67 |
Q |
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| T |
40722001 |
ttttccacgacaagtcgagtcataccgctatttccgtattcctctg |
40721956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 89 - 201
Target Start/End: Original strand, 8530787 - 8530906
Alignment:
| Q |
89 |
caatttagatggattagcttctagattttccatggagtaagtttttggtttccaac--------gttattgttggcttctggtattgatgggatccaata |
180 |
Q |
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| T |
8530787 |
caatttagatggattggcttctagattttccatggagtaggttttt-gtttccaacttgtattggtaattgttgtcttctagtactgatggaatctgata |
8530885 |
T |
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| Q |
181 |
tactagttgtgacattggcat |
201 |
Q |
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| T |
8530886 |
tactagttgtgacattggcat |
8530906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 27222839 - 27222884
Alignment:
| Q |
22 |
ttttcctccacaagtcgagtcataccgctatttctgtgttcctctg |
67 |
Q |
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| T |
27222839 |
ttttcctccacaagtcgagtcatactgctatttctgtattcctctg |
27222884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 5155461 - 5155407
Alignment:
| Q |
89 |
caatttagatggattagcttctagattttccatggagtaagtttttggtttccaac |
144 |
Q |
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| T |
5155461 |
caatttagatagattggcttctagattttccatggagtaggttttt-gtttccaac |
5155407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 5155385 - 5155332
Alignment:
| Q |
148 |
attgttggcttctggtattgatgggatccaatatactagttgtgacattggcat |
201 |
Q |
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| T |
5155385 |
attgttgtcttctagtactgatggaatctgatatactagttgtgacattggcat |
5155332 |
T |
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