View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1439_low_27 (Length: 239)
Name: NF1439_low_27
Description: NF1439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1439_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 3010193 - 3010421
Alignment:
| Q |
1 |
cccagacatattttatttgggtttatgaccaaattagtatttcggttaccaactctnnnnnnnnnggttacaatccaatttacccaacatgttcactaaa |
100 |
Q |
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| T |
3010193 |
cccagacatattttatttgggtttatgaccaaataagtatttcggttaccaactctaaaaaaaaaggttacaatccaattttcccaacatgttcactaaa |
3010292 |
T |
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| Q |
101 |
gagcaatgtgaacattagtgcacatatagtgtcattgccattattgttactccaaatggaaaacccaatttgatggaattcagatttgctctagtaccta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3010293 |
gagcaatgtgaacattagtgcacatatagtgtcattgccattattgttactctaaatggaaaacccaatttgatggaattcagatctgctctagtaccta |
3010392 |
T |
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| Q |
201 |
tatgttccagtttccaagtttgcttcatc |
229 |
Q |
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|||||||||||||||||||| ||||||| |
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| T |
3010393 |
tatgttccagtttccaagttcacttcatc |
3010421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 3019051 - 3019131
Alignment:
| Q |
85 |
caacatgttcactaaagagcaatgtgaacattagtgcacatatagtgtcattgccattattgttactccaaatggaaaaccc |
166 |
Q |
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|||||||||| ||||||||||||||||| || ||||| ||| | ||||||||||||||||||||||||||||| ||||||| |
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| T |
3019051 |
caacatgttctttaaagagcaatgtgaacgttggtgcatataaa-tgtcattgccattattgttactccaaatgaaaaaccc |
3019131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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