View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1439_low_8 (Length: 386)
Name: NF1439_low_8
Description: NF1439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1439_low_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 7 - 386
Target Start/End: Complemental strand, 47367291 - 47366912
Alignment:
| Q |
7 |
gcagcacagatagtttgattcctagcaaagtttcaggaaaaatagtgatatgtgaccgaggaggaaatcctagagctgaaaagagtttggtggtcaaacg |
106 |
Q |
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| T |
47367291 |
gcagcacagatagtttgattcctagcaaagtttcaggaaaaatagtgatatgtgaccgaggaggaaatcctagagctgaaaagagtttggtggtcaaacg |
47367192 |
T |
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| Q |
107 |
cgcaggaggaattgggatgattttagcaaacaaccaagattatggtgaagagctagttgctgactcctttctcctccctgcagcagctttgggagagaaa |
206 |
Q |
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| T |
47367191 |
cgcaggaggaattgggatgattttagcaaacaaccaagattatggtgaagagctagttgctgactcctttctcctccctgcagcagctttgggagagaaa |
47367092 |
T |
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| Q |
207 |
gcaagcaatgaaataaagaagtatgcttcttcagctcccaatccaactgctaaaattgcatttggcggtacccggttcggggttcaaccatccccagtgg |
306 |
Q |
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| T |
47367091 |
gcaagcaatgaaataaagaagtatgcttcttcagctcccaatccaactgctaaaattgcatttggcggtacccggttcggggttcaaccatccccagtgg |
47366992 |
T |
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| Q |
307 |
tggcagctttcagctctagaggaccaaatatactcacaccaaaaatactcaaaccagacctgatagctccaggagtcaac |
386 |
Q |
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| T |
47366991 |
tggcagctttcagctctagaggaccaaatatactcacaccaaaaatactcaaacccgacctgatagctccaggagtcaac |
47366912 |
T |
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