View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14400_high_11 (Length: 331)

Name: NF14400_high_11
Description: NF14400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14400_high_11
NF14400_high_11
[»] chr7 (20 HSPs)
chr7 (10-331)||(22879450-22879772)
chr7 (10-228)||(22813840-22814059)
chr7 (10-224)||(22874741-22874956)
chr7 (10-228)||(22892766-22892985)
chr7 (10-224)||(22897082-22897297)
chr7 (10-224)||(22838865-22839080)
chr7 (10-224)||(22888111-22888326)
chr7 (10-228)||(22808433-22808652)
chr7 (10-228)||(22829844-22830063)
chr7 (10-224)||(22804149-22804364)
chr7 (226-331)||(22814102-22814207)
chr7 (226-331)||(22839127-22839232)
chr7 (226-331)||(22804411-22804516)
chr7 (226-331)||(22888373-22888478)
chr7 (226-331)||(22893028-22893133)
chr7 (226-331)||(22875003-22875108)
chr7 (226-331)||(22808695-22808800)
chr7 (232-331)||(22830112-22830211)
chr7 (240-331)||(22912754-22912845)
chr7 (227-331)||(22897345-22897449)
[»] chr1 (2 HSPs)
chr1 (10-228)||(21151682-21151901)
chr1 (226-331)||(21151534-21151639)
[»] chr5 (1 HSPs)
chr5 (83-128)||(15627142-15627187)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 10 - 331
Target Start/End: Original strand, 22879450 - 22879772
Alignment:
Q  10 aagaatatcacctcttttccaacactcaaacacaaaatcaaccaaaattacacattcattttccc-tacattaacaataggccttctaccacaagcaacc 108  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||| ||| ||||||||||||    
T  22879450 aagaatatcacctcttttccaacactcaaacacactatcaaccaaaattacacattcattttcccctacattagcaataggccctcttccacaagcaacc 22879549  T
Q  109 tcaagaagaaatgcaccaaaagaaaatatatcagaaaatttagtggccttacctgttctaatatgttcatgagcaagataaccaatagttccagccaaat 208  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22879550 tcaagaagaaatgcaccaaaagaaaacatatcagaaaatttagtcgccttacctgttctaatatgttcatgagcaagataaccaatagttccagccaaat 22879649  T
Q  209 gagttgtgtgaggatctgcattgaattcagaatctaacaacacattactagcttttatgtctctatggataacaactttctcccattcttcatgaagata 308  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22879650 gagttttgtgaggatctgcattgaattcagaatctaacaacacattactagcttttatgtctctatggataacaactttctcccatttttcatgaagata 22879749  T
Q  309 aaccacacctgaagcaacacctt 331  Q
    |||||||||||||||||||||||    
T  22879750 aaccacacctgaagcaacacctt 22879772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 22813840 - 22814059
Alignment:
Q  10 aagaatatcacctcttttccaacactcaaacacaaaatcaaccaaaattacacattcattttcccta-cattaacaataggccttctaccacaagcaacc 108  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||| | |||||  |||||||||||||||||||||||||    
T  22813840 aagaatatcacctcttttccaacactcaaatacacaatcaaccaaaattacactttcattttccccaacattagaaataggccttctaccacaagcaacc 22813939  T
Q  109 tcaagaagaaatgcaccaaaagaaaatatatcagaaaatttagtggccttacctgttctaatatgttcatgagcaagataaccaatagttccagccaaat 208  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  22813940 tcaagaagaaatgcaccaaaagaaaacatatcagaaaatttagtggccttacctgttctaatatgttcaggagcaagataaccaattgttccagccaaat 22814039  T
Q  209 gagttgtgtgaggatctgca 228  Q
    ||||||||||||||||||||    
T  22814040 gagttgtgtgaggatctgca 22814059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 22874741 - 22874956
Alignment:
Q  10 aagaatatcacctcttttccaacactcaaacacaaaatcaaccaaaattacacattcattttccc-tacattaacaataggccttctaccacaagcaacc 108  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  22874741 aagaatatcacctcttttccaacactcaaatacacaatcaaccaaaattacacattcattttcccctacattggcaataggccttctaccacaagcaacc 22874840  T
Q  109 tcaagaagaaatgcaccaaaagaaaatatatcagaaaatttagtggccttacctgttctaatatgttcatgagcaagataaccaatagttccagccaaat 208  Q
    |||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||  ||||||||||||||||||||||||||||||    
T  22874841 tcaagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttaccagttctaatatgttccggagcaagataaccaatagttccagccaaat 22874940  T
Q  209 gagttgtgtgaggatc 224  Q
    ||||||||||||||||    
T  22874941 gagttgtgtgaggatc 22874956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 22892766 - 22892985
Alignment:
Q  10 aagaatatcacctcttttccaacactcaaacacaaaatcaaccaaaattacacattcattttcccta-cattaacaataggccttctaccacaagcaacc 108  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||| | |||||  |||||||||||||||||||||||||    
T  22892766 aagaatatcacctcttttccaacactcaaatacacaatcaaccaaaattacactttcattttccccaacattagaaataggccttctaccacaagcaacc 22892865  T
Q  109 tcaagaagaaatgcaccaaaagaaaatatatcagaaaatttagtggccttacctgttctaatatgttcatgagcaagataaccaatagttccagccaaat 208  Q
    |||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  22892866 tcaagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgttccggagcaagataaccaatagttccagccaaat 22892965  T
Q  209 gagttgtgtgaggatctgca 228  Q
    |||| |||||| ||||||||    
T  22892966 gagtcgtgtgatgatctgca 22892985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 22897082 - 22897297
Alignment:
Q  10 aagaatatcacctcttttccaacactcaaacacaaaatcaaccaaaattacacattcattttcc-ctacattaacaataggccttctaccacaagcaacc 108  Q
    |||||||| ||| ||||||||||||||||| ||| |||||||||||||||| |||||||||||| |||||||  ||||||||||||||||||||||||||    
T  22897082 aagaatattaccccttttccaacactcaaagacacaatcaaccaaaattacgcattcattttccgctacattttcaataggccttctaccacaagcaacc 22897181  T
Q  109 tcaagaagaaatgcaccaaaagaaaatatatcagaaaatttagtggccttacctgttctaatatgttcatgagcaagataaccaatagttccagccaaat 208  Q
    || ||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |||||||| | || ||||| || | ||||||| ||||||    
T  22897182 tcgagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctagtatgttcaggtgctagataccctacagttccaaccaaat 22897281  T
Q  209 gagttgtgtgaggatc 224  Q
    ||||||||||||||||    
T  22897282 gagttgtgtgaggatc 22897297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 22838865 - 22839080
Alignment:
Q  10 aagaatatcacctcttttccaacactcaaacacaaaatcaaccaaaattacacattcattttc-cctacattaacaataggccttctaccacaagcaacc 108  Q
    |||||||||||||||||||||||||||||||||| ||||||| | ||||| ||  |||| ||| ||||||  | | |||||||| ||||||||| |||||    
T  22838865 aagaatatcacctcttttccaacactcaaacacacaatcaactagaattagactctcatattctcctacacgacctataggcctcctaccacaaacaacc 22838964  T
Q  109 tcaagaagaaatgcaccaaaagaaaatatatcagaaaatttagtggccttacctgttctaatatgttcatgagcaagataaccaatagttccagccaaat 208  Q
    |||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||| ||||||    
T  22838965 tcaagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgatcaggagcaagataaccaaaagttccaaccaaat 22839064  T
Q  209 gagttgtgtgaggatc 224  Q
    |||| |||||||||||    
T  22839065 gagtagtgtgaggatc 22839080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 22888111 - 22888326
Alignment:
Q  10 aagaatatcacctcttttccaacactcaaacacaaaatcaaccaaaattacacattcattttc-cctacattaacaataggccttctaccacaagcaacc 108  Q
    |||||| |||||||||| |||||| ||||||||| ||||||| | ||||| ||  ||||| || ||||||  | | |||||||| ||||||||| |||||    
T  22888111 aagaatctcacctctttgccaacattcaaacacagaatcaactagaattagactctcattgtctcctacacgacctataggcctcctaccacaaacaacc 22888210  T
Q  109 tcaagaagaaatgcaccaaaagaaaatatatcagaaaatttagtggccttacctgttctaatatgttcatgagcaagataaccaatagttccagccaaat 208  Q
    |||||||||||||||||||||||||| | ||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  22888211 tcaagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctcttctaatatgttcaggagcaagataaccaatagttccagccaaat 22888310  T
Q  209 gagttgtgtgaggatc 224  Q
    ||||||||||||||||    
T  22888311 gagttgtgtgaggatc 22888326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 22808433 - 22808652
Alignment:
Q  10 aagaatatcacctcttttccaacactcaaacacaaaatcaaccaaaattacacattcattttc-cctacattaacaataggccttctaccacaagcaacc 108  Q
    |||||| ||||||||||||||||| ||||||||| ||||||| | ||||| ||  |||||||| || |||  | | |||||||| | ||||||| |||||    
T  22808433 aagaatttcacctcttttccaacattcaaacacataatcaactagaattagactctcattttctcccacacgacctataggcctccgaccacaaacaacc 22808532  T
Q  109 tcaagaagaaatgcaccaaaagaaaatatatcagaaaatttagtggccttacctgttctaatatgttcatgagcaagataaccaatagttccagccaaat 208  Q
    |||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||||| ||||||    
T  22808533 tcaagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgctcaggggcaagataaccaatagttccaaccaaat 22808632  T
Q  209 gagttgtgtgaggatctgca 228  Q
    ||||||||||||||||||||    
T  22808633 gagttgtgtgaggatctgca 22808652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 22829844 - 22830063
Alignment:
Q  10 aagaatatcacctcttttccaacactcaaacacaaaatcaaccaaaattacacattcattttc-cctacattaacaataggccttctaccacaagcaacc 108  Q
    |||||| |||||||||| |||||| ||||||||| ||||||| | ||||| ||  ||||| || ||||||    | | |||||| ||||||||| |||||    
T  22829844 aagaatctcacctctttgccaacattcaaacacataatcaactagaattagactctcattgtctcctacacggcctagaggcctcctaccacaaacaacc 22829943  T
Q  109 tcaagaagaaatgcaccaaaagaaaatatatcagaaaatttagtggccttacctgttctaatatgttcatgagcaagataaccaatagttccagccaaat 208  Q
    |||||||||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22829944 tcaagaagaaatgcaccaaaagaaaacacatcagaaaattttgtagccttacctgttctaatatgttcaggagcaagataaccaatagttccagccaaat 22830043  T
Q  209 gagttgtgtgaggatctgca 228  Q
    ||||||||||||||||||||    
T  22830044 gagttgtgtgaggatctgca 22830063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 22804149 - 22804364
Alignment:
Q  10 aagaatatcacctcttttccaacactcaaacacaaaatcaaccaaaattacacattcattttc-cctacattaacaataggccttctaccacaagcaacc 108  Q
    |||||| |||||||||||| |||| |||||||||  |||||| | || || ||  ||||| || ||||||  | | |||||||| ||||||||| |||||    
T  22804149 aagaatttcacctcttttcaaacattcaaacacatgatcaactagaactagactctcattctctcctacacgacctataggcctcctaccacaaacaacc 22804248  T
Q  109 tcaagaagaaatgcaccaaaagaaaatatatcagaaaatttagtggccttacctgttctaatatgttcatgagcaagataaccaatagttccagccaaat 208  Q
    |||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||| ||||||    
T  22804249 tcaagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgatcaggagcaagataaccaaaagttccaaccaaat 22804348  T
Q  209 gagttgtgtgaggatc 224  Q
    |||| |||||||||||    
T  22804349 gagtagtgtgaggatc 22804364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 226 - 331
Target Start/End: Original strand, 22814102 - 22814207
Alignment:
Q  226 gcattgaattcagaatctaacaacacattactagcttttatgtctctatggataacaactttctcccattcttcatgaagataaaccacacctgaagcaa 325  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22814102 gcattaaattcagaatctaataacacattactagcttttatgtctctatggataacaactttctcccattcttcatgaagataaaccacacctgaagcaa 22814201  T
Q  326 cacctt 331  Q
    ||||||    
T  22814202 cacctt 22814207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 226 - 331
Target Start/End: Original strand, 22839127 - 22839232
Alignment:
Q  226 gcattgaattcagaatctaacaacacattactagcttttatgtctctatggataacaactttctcccattcttcatgaagataaaccacacctgaagcaa 325  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22839127 gcattaaattcagaatctaacaacacattactagcttttatgtctctatggataacaactttctcccattcttcatgaagataaaccaaacctgaagcaa 22839226  T
Q  326 cacctt 331  Q
    ||||||    
T  22839227 cacctt 22839232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 226 - 331
Target Start/End: Original strand, 22804411 - 22804516
Alignment:
Q  226 gcattgaattcagaatctaacaacacattactagcttttatgtctctatggataacaactttctcccattcttcatgaagataaaccacacctgaagcaa 325  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  22804411 gcattaaattcagaatctaacaacacattactagcttttatgtctctatggataacaactttctcccattcttcgtgaagataaaccacagctgaagcaa 22804510  T
Q  326 cacctt 331  Q
    ||||||    
T  22804511 cacctt 22804516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 226 - 331
Target Start/End: Original strand, 22888373 - 22888478
Alignment:
Q  226 gcattgaattcagaatctaacaacacattactagcttttatgtctctatggataacaactttctcccattcttcatgaagataaaccacacctgaagcaa 325  Q
    ||||| ||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22888373 gcattaaatccagaatctaacaacacattactagcctttatgtctctatgaataacaactttctcccattcttcatgaagataaaccacacctgaagcaa 22888472  T
Q  326 cacctt 331  Q
    ||||||    
T  22888473 cacctt 22888478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 226 - 331
Target Start/End: Original strand, 22893028 - 22893133
Alignment:
Q  226 gcattgaattcagaatctaacaacacattactagcttttatgtctctatggataacaactttctcccattcttcatgaagataaaccacacctgaagcaa 325  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||    
T  22893028 gcattaaattcagaatctaacaacacattactagcttttatgtctctatgaattacaactttctcccattcttcatgaagataaaccacgcctgaagcaa 22893127  T
Q  326 cacctt 331  Q
    ||||||    
T  22893128 cacctt 22893133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 226 - 331
Target Start/End: Original strand, 22875003 - 22875108
Alignment:
Q  226 gcattgaattcagaatctaacaacacattactagcttttatgtctctatggataacaactttctcccattcttcatgaagataaaccacacctgaagcaa 325  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |||||||||| |||||||||||    
T  22875003 gcattaaattcagaatctaacaacacattactagcttttatgtctctatgaatcacaactttttcccattcttcatgtagataaaccaaacctgaagcaa 22875102  T
Q  326 cacctt 331  Q
    ||||||    
T  22875103 cacctt 22875108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 226 - 331
Target Start/End: Original strand, 22808695 - 22808800
Alignment:
Q  226 gcattgaattcagaatctaacaacacattactagcttttatgtctctatggataacaactttctcccattcttcatgaagataaaccacacctgaagcaa 325  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||| ||| || |||||||||||||||||||| || ||||||||||||||||| ||||    
T  22808695 gcattaaattcagaatctaacaacacattactagcctttatgtctcgatgaattacaactttctcccattcttcgtgtagataaaccacacctgacgcaa 22808794  T
Q  326 cacctt 331  Q
    ||||||    
T  22808795 cacctt 22808800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 232 - 331
Target Start/End: Original strand, 22830112 - 22830211
Alignment:
Q  232 aattcagaatctaacaacacattactagcttttatgtctctatggataacaactttctcccattcttcatgaagataaaccacacctgaagcaacacctt 331  Q
    ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| || ||||||||||||||||| |||| |||||    
T  22830112 aattcagaatctaacaacacattactagcctttatgtctctatgaatcacaactttctcccattcttcgtgtagataaaccacacctgacgcaatacctt 22830211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 331
Target Start/End: Original strand, 22912754 - 22912845
Alignment:
Q  240 atctaacaacacattactagcttttatgtctctatggataacaactttctcccattcttcatgaagataaaccacacctgaagcaacacctt 331  Q
    |||||| || |||||||||||||| ||||||||||| ||||||||||  |||||||||||||| | ||||| || ||| |||||||||||||    
T  22912754 atctaataaaacattactagctttaatgtctctatgaataacaacttgttcccattcttcatgtaaataaaacaaaccagaagcaacacctt 22912845  T

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Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 331
Target Start/End: Original strand, 22897345 - 22897449
Alignment:
Q  227 cattgaattcagaatctaacaacacattactagcttttatgtctctatggataacaactttctcccattcttcatgaagataaaccacacctgaagcaac 326  Q
    |||| ||||||  |||||| |||||||| ||||| |||||||||||||| || ||||| | |||||||||||| || ||||||| || |||  |||||||    
T  22897345 cattcaattcaccatctaataacacattgctagcctttatgtctctatgaatcacaacctgctcccattcttcgtgtagataaaacaaacccaaagcaac 22897444  T
Q  327 acctt 331  Q
    |||||    
T  22897445 acctt 22897449  T

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Target: chr1 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 10 - 228
Target Start/End: Complemental strand, 21151901 - 21151682
Alignment:
Q  10 aagaatatcacctcttttccaacactcaaacacaaaatcaaccaaaattacacattcattttc-cctacattaacaataggccttctaccacaagcaacc 108  Q
    |||||| ||||||||||||||||| ||||||||| ||||||| | ||||| ||  || || || || |||| | | |||||||| ||||||||| |||||    
T  21151901 aagaatttcacctcttttccaacattcaaacacataatcaactagaattagactctcgttgtctccgacatgacctataggcctcctaccacaaacaacc 21151802  T
Q  109 tcaagaagaaatgcaccaaaagaaaatatatcagaaaatttagtggccttacctgttctaatatgttcatgagcaagataaccaatagttccagccaaat 208  Q
    |||||||||||||||||||||||||| | ||||||| ||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  21151801 tcaagaagaaatgcaccaaaagaaaacacatcagaagatttagtagccttacctgttctaatatgttccggagcaagataaccaatagttccagccaaat 21151702  T
Q  209 gagttgtgtgaggatctgca 228  Q
    ||||||||||||||||||||    
T  21151701 gagttgtgtgaggatctgca 21151682  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 226 - 331
Target Start/End: Complemental strand, 21151639 - 21151534
Alignment:
Q  226 gcattgaattcagaatctaacaacacattactagcttttatgtctctatggataacaactttctcccattcttcatgaagataaaccacacctgaagcaa 325  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  21151639 gcattaaattcagaatctaacaacacattactagcttttatgtctctatgaattacaactttctcccattcttcatgtagataaaccacacttgaagcaa 21151540  T
Q  326 cacctt 331  Q
    ||||||    
T  21151539 cacctt 21151534  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 15627142 - 15627187
Alignment:
Q  83 caataggccttctaccacaagcaacctcaagaagaaatgcaccaaa 128  Q
    ||||||||||||| |||||||| |||||||| |||| |||||||||    
T  15627142 caataggccttctcccacaagctacctcaagcagaagtgcaccaaa 15627187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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