View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14400_high_13 (Length: 323)
Name: NF14400_high_13
Description: NF14400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14400_high_13 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 27 - 323
Target Start/End: Complemental strand, 43065732 - 43065438
Alignment:
| Q |
27 |
tatacagaatccaagccaaataattgaataccaaacaaacaagtatgtaataataacaactnnnnnnnnnncattacgataatataataatggcatggta |
126 |
Q |
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| T |
43065732 |
tatacagaatccaagccaaataattgaataccaaacaaacaagtatgtaataataacaactaaaaaaaa--cattacgataatataataatggcatggta |
43065635 |
T |
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| Q |
127 |
atgttaaaatgcaagaatgaagtatatatgagaacacagaaccatcgactattttaaaactagcgattcataaatnnnnnnncgataggattcagaattg |
226 |
Q |
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| T |
43065634 |
atgttaaaatgcaagaatgaagtatatatgagaacacagaaccatcaactattttaaaactagcgattcataaataaaaaaacgataggattcagaattg |
43065535 |
T |
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| Q |
227 |
cgattaaacacgtgcatgaatagaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaatcga |
323 |
Q |
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| T |
43065534 |
cgattaaacatgtgcatgaatcgaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaatcga |
43065438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 249 - 320
Target Start/End: Original strand, 43047402 - 43047473
Alignment:
| Q |
249 |
gaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaat |
320 |
Q |
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| T |
43047402 |
gaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaat |
43047473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 43047239 - 43047289
Alignment:
| Q |
108 |
atataataatggcatggtaatgttaaaatgcaagaatgaagtatatatgag |
158 |
Q |
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| T |
43047239 |
atataataatggcatggtaatgttaaaatgcatgaatgaagaatgtatgag |
43047289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 42159055 - 42159107
Alignment:
| Q |
254 |
acaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaata |
306 |
Q |
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| T |
42159055 |
acaaaagcattattatgtaatcgatcaaagatgtaaagtaaagtacacgaata |
42159107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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