View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14400_high_1_N (Length: 789)
Name: NF14400_high_1_N
Description: NF14400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14400_high_1_N |
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Alignment Details
Target: chr8 (Bit Score: 702; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 13 - 764
Target Start/End: Complemental strand, 25011720 - 25010967
Alignment:
| Q |
13 |
tgagatgga-catcatcaagatgcacacaggcagaggatcgttgactggatcagtgctgctggtggtactgcaggtgcatttgatgttacaaccaaaggg |
111 |
Q |
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| T |
25011720 |
tgagatggatcataatcaagatgcacacaggcagaggatcgttgactggatcagtgctgctggtggtactgcaggtgcatttgatgttacaaccaaaggg |
25011621 |
T |
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| Q |
112 |
attcttcactctgtgagtactcaacttgacggtttcaataatttctcttcaaacttactcttcaatcctgtggaattcttcgaatagtgtatagcactta |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011620 |
attcttcactctgtgagtactcaacttgacggtttcaataatttctcttcaaacttactcttcaatcctgtggaattcttcgaatagtgtatagcacttt |
25011521 |
T |
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| Q |
212 |
cacgaaacgataatttgacaaagcaacgtgttt-cagatatactagtttcaccagcttagtggaatttgtttacaatctttttgtagcaagacaacaatc |
310 |
Q |
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| T |
25011520 |
ttcgaaacgataatttgacaaagcaacgtgttttcagatatactagtttcaccagcttagtggaatttgtttacaatctttttgtagcaagacaacaatc |
25011421 |
T |
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| Q |
311 |
tactatgtttcttgagcttttgttttttccccaataacagtgaagttacaatgacgatgcttctagtgaaagaattggatttggtgcagtcacaaatttc |
410 |
Q |
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| T |
25011420 |
tactatgtttcttgagcttttgttttttccccaataacagtgaagttacaatgacgatgcttctagtgaaagaattggatttggtgcagtcacaaatttc |
25011321 |
T |
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| Q |
411 |
atgtattcacacagtcagcacattagtgatggttggatcgtgattagactgtcatgagttcaaatcctatatgggacaattgtaaaatgatcattagtgc |
510 |
Q |
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| T |
25011320 |
atgtattcacacagtcagcacattagtgatggttggatcgtgattagactgtcatgagttcaaatcctatatggaacaattgtaaaatgatcattagtgc |
25011221 |
T |
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| Q |
511 |
taacctttattaatagtaataatttcaaatttgtttttaaactgaaactcaccgcacctctctaaggatacttaaaaatgagcagacagaagtttacgct |
610 |
Q |
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| T |
25011220 |
taacctttattaataataataatttcaaatttgtttttaaactgaaactcaccgcacctctctaaggatacttaaaaatgagcagacagaagtttacgct |
25011121 |
T |
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| Q |
611 |
gttaccatttttgctttttactagacaagtctgtttattctgcaactgactagatgatatttcatttgaatttggctcctttgtaggcgttggaaagatg |
710 |
Q |
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| T |
25011120 |
gttaccatttttgctttttactagacaagtctgtttattttgcaactgactagatgacatttcatttgaatttggctcctttgtaggcgttggaaagatg |
25011021 |
T |
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| Q |
711 |
tgagtattggcgcttgtcggatcagcagggaaaaccccctggcgttatgggatg |
764 |
Q |
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| T |
25011020 |
tgagtattggcgcttgtcggatcagcagggaaaaccccctggtgttatgggatg |
25010967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 466 - 505
Target Start/End: Complemental strand, 4752841 - 4752802
Alignment:
| Q |
466 |
gagttcaaatcctatatgggacaattgtaaaatgatcatt |
505 |
Q |
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| T |
4752841 |
gagttcaaatcctatatggaacagttgtaaaatgatcatt |
4752802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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