View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14400_high_6 (Length: 358)
Name: NF14400_high_6
Description: NF14400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14400_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 357
Target Start/End: Original strand, 21218871 - 21219212
Alignment:
| Q |
16 |
atatatcttcattggggtaacctgccttgcttcgcaacagtcaggaattatgagctctattcccttaggatccgctgagcacagaagacaaaaaacaaat |
115 |
Q |
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| T |
21218871 |
atatatcttcattggggtaacctgccttgcttcgcaacagtcaggaattatgagctctattcccttaggatccgctgagcacagaagacaaaaaacaaat |
21218970 |
T |
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| Q |
116 |
aattacattagggatgtatattacaatgacacaaaatcttatagaatcgatacatacatacacacaaaacaataaataaaatgatccattaaccaggata |
215 |
Q |
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| T |
21218971 |
aattacattagggatgtatattacaatgacacaaaatcttatagaatcgatacatacatacacacagaacaataaataaaatgatccattaaccaggata |
21219070 |
T |
|
| Q |
216 |
tatcagcacagctgacaaatcagtcaaacattgctgtatactaaaagatctcatcaaaagtacgatagtgtaatcagtgaatcaagtactatagttgcac |
315 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21219071 |
tatcagcacagttgacaaatcagtcaaacattgctgtatactaaaagatctcatcaaaagtacgatagtgtaatcagtgaatcaagtactatagttgcac |
21219170 |
T |
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| Q |
316 |
aaaacaactatttagtaaaatataatcaagattccaggagta |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
21219171 |
aaaacaactatttagtaaaatataatcaagattccaggagta |
21219212 |
T |
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