View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14400_high_8 (Length: 353)
Name: NF14400_high_8
Description: NF14400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14400_high_8 |
 | |
|
| [»] scaffold0985 (1 HSPs) |
| | |
|
| [»] scaffold0114 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 21 - 352
Target Start/End: Complemental strand, 23062487 - 23062156
Alignment:
| Q |
21 |
tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc |
120 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23062487 |
tgtcagagtcaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc |
23062388 |
T |
|
| Q |
121 |
gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23062387 |
gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga |
23062288 |
T |
|
| Q |
221 |
taatgatgaaggggtacgaattgctgatgaacaaggcatgagtcaggttgcaaaagaatattttgagactttatttttagagagcaatagtacttgtgca |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23062287 |
taatgatgaaggggtacgaattgctgatgaacaaggcatgagtcaggttgcaaaagaatattttgagactttatttttagagagcaatagtactcgtgca |
23062188 |
T |
|
| Q |
321 |
ccgattgttaatataatagaaaaagttgtgtc |
352 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
|
|
| T |
23062187 |
ccggttgttaatataatagaaaaagttgtgtc |
23062156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 32 - 352
Target Start/End: Original strand, 32880670 - 32880977
Alignment:
| Q |
32 |
aggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagaca |
131 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
32880670 |
aggggctgcggcttatcctagtttgttgacaaacttgcgca-------------tttgatgattcaagaggataagtatgggtgacagcgagcaaagaca |
32880756 |
T |
|
| Q |
132 |
cactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaag |
231 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
32880757 |
cactggtatcatgatggtgacttgaataccaaatattttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaatgttttggataataatgaag |
32880856 |
T |
|
| Q |
232 |
gggtacgaattgctgatgaacaaggcatgagtcaggttgcaaaagaatattttgagactttatttttagagagcaatagtacttgtgcaccgattgttaa |
331 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
32880857 |
gggtacgaattgctgatgaacaaggcatgcgtcaggttgcaaaagaatattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaa |
32880956 |
T |
|
| Q |
332 |
tataatagaaaaagttgtgtc |
352 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32880957 |
tataatagaaaaagttgtgtc |
32880977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 43992323 - 43992238
Alignment:
| Q |
90 |
atgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgc |
175 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||| || || ||||||||||||||||| || ||||| || ||||||||||| |
|
|
| T |
43992323 |
atgattcaagaggataagtattggagacaaagagcaaaaactcattggtatcgtgatggtgatttaaatacaaatttttttcatgc |
43992238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 19318928 - 19318834
Alignment:
| Q |
78 |
atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttca |
172 |
Q |
| |
|
||||| || |||||||| ||||||||||| ||||||||||| || ||||| | |||||||| ||||||||||| | || || ||||||||||| |
|
|
| T |
19318928 |
atgactcagttgatgatacaagaggataaatattggcgacaacgtgcaaaaattcactggtaccgtgatggtgatctaaacacgaaattttttca |
19318834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 21 - 352
Target Start/End: Complemental strand, 28593093 - 28592763
Alignment:
| Q |
21 |
tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc |
120 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
28593093 |
tgtcggagtcaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgat-attcaagaggataagtattggcgacaac |
28592995 |
T |
|
| Q |
121 |
gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28592994 |
gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaagataaaccgcattaattttttgga |
28592895 |
T |
|
| Q |
221 |
taatgatgaaggggtacgaattgctgatgaacaaggcatgagtcaggttgcaaaagaatattttgagactttatttttagagagcaatagtacttgtgca |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28592894 |
taatgatgaaggggtacgaattgctgatgaacaaggcatgagtcaggttgcaaaagaatattttgagactttatttttagagagcaatagtactcgtgca |
28592795 |
T |
|
| Q |
321 |
ccgattgttaatataatagaaaaagttgtgtc |
352 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
|
|
| T |
28592794 |
ccggttgttaatataatagaaaaagttgtgtc |
28592763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 21 - 352
Target Start/End: Complemental strand, 25907489 - 25907158
Alignment:
| Q |
21 |
tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc |
120 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25907489 |
tgtcggagtcgaggggttgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc |
25907390 |
T |
|
| Q |
121 |
gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga |
220 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25907389 |
gagcaaagacacacttgtatcgtgatggtgacttgaataccaaatttcttcatgcttcagccatgtcaagaaagaaggtaaaccgcattaattttttgga |
25907290 |
T |
|
| Q |
221 |
taatgatgaaggggtacgaattgctgatgaacaaggcatgagtcaggttgcaaaagaatattttgagactttatttttagagagcaatagtacttgtgca |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25907289 |
taatgatgaaggggtacgaattgctgatgaacaaggcatgagtcaggtggcaaaagaatattttgagactttatttttagagagcaatagtactcgtgca |
25907190 |
T |
|
| Q |
321 |
ccgattgttaatataatagaaaaagttgtgtc |
352 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
|
|
| T |
25907189 |
ccggttgttaatataatagaaaaagttgtgtc |
25907158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 13109035 - 13108960
Alignment:
| Q |
234 |
gtacgaattgctgatgaacaaggcatgagtcaggttgcaaaagaatattttgagactttatttttagagagcaatag |
310 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||| |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
13109035 |
gtacgaattgctgatgaacaaggcatgcgtcagattgc-aaagaatattttgaaactttatttttagagagtaatag |
13108960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 21695849 - 21695952
Alignment:
| Q |
96 |
caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaaga |
195 |
Q |
| |
|
|||||||||| ||| ||| |||| |||| || || ||||||||||||||||| || |||||||| | ||| |||||||| |||| || |||||||||| |
|
|
| T |
21695849 |
caagaggatatgtactggtgacaaagagccaaaactcactggtatcgtgatggagatttgaatacgagattctttcatgcggcagcaacttcaagaaaga |
21695948 |
T |
|
| Q |
196 |
aggt |
199 |
Q |
| |
|
|||| |
|
|
| T |
21695949 |
aggt |
21695952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 351
Target Start/End: Complemental strand, 21279489 - 21279159
Alignment:
| Q |
21 |
tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc |
120 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| |||||||||||||| ||||||||||| || |||||||||||||| ||||| |||||||| || | |
|
|
| T |
21279489 |
tgtcggagtcaaggggctgcggttgatcctagttttttgacaaacttgcggaaacgcatgacgcaattgatgattcaagaagataactattggcggcaac |
21279390 |
T |
|
| Q |
121 |
gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga |
220 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| ||||||| ||| |||||||| |||||||| ||||||||||||||||||| |||||||||| |||| |
|
|
| T |
21279389 |
gagctaagacacattggtatcgtgatggtgacgtgaatacaaaaaaatttcatgcatcagccacatcaagaaagaaggtaaaccacattaattttctgga |
21279290 |
T |
|
| Q |
221 |
taatgatgaaggggtacgaattgctgatgaacaaggcatgagtcaggttgcaaaagaatattttgagactttatttttagagagcaatagtacttgtgca |
320 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |
|
|
| T |
21279289 |
taatgatgaacgggtacgagttgctgatgaacaaggcatgtgtcaggttgcaaaagaatattttgacactttatttttagagagtaatagtactcctgca |
21279190 |
T |
|
| Q |
321 |
ccgattgttaatataatagaaaaagttgtgt |
351 |
Q |
| |
|
||| |||| |||||||||||||| |||||| |
|
|
| T |
21279189 |
ccggttgtagatataatagaaaaatttgtgt |
21279159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 28164989 - 28164880
Alignment:
| Q |
94 |
ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa |
193 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||| || |||||||||||||||||||| ||| | || |||||| | || |||||||| || || || ||||| |
|
|
| T |
28164989 |
ttcaagaggatatgtattggagacagagagctaaaacacactggtatcgtgatggagacctaaacaccaaaatcttccatgcttccgcaacctccagaaa |
28164890 |
T |
|
| Q |
194 |
gaaggtaaac |
203 |
Q |
| |
|
||| |||||| |
|
|
| T |
28164889 |
gaaagtaaac |
28164880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 9e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 162 - 352
Target Start/End: Original strand, 30302015 - 30302204
Alignment:
| Q |
162 |
aaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatga |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30302015 |
aaattttttcatgcttcagccacgtcaagaaaga-ggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatga |
30302113 |
T |
|
| Q |
262 |
gtcaggttgcaaaagaatattttgagactttatttttagagagcaatagtacttgtgcaccgattgttaatataatagaaaaagttgtgtc |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
30302114 |
gtcaggttgcaaaagaatattttgagactttatttttagagagcaatagtactcgtgcaccggttggtaatataatagaaaaagttgtgtc |
30302204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 14779531 - 14779577
Alignment:
| Q |
132 |
cactggtatcgtgatggtgacttgaataccaaattttttcatgcttc |
178 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| |||||| ||||||| |
|
|
| T |
14779531 |
cactggtatcgtgatggggacttgaacaccaattttttttatgcttc |
14779577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 20584724 - 20584800
Alignment:
| Q |
96 |
caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttca |
172 |
Q |
| |
|
|||||||||| |||||||||||| |||| || || ||||||||||| ||||| ||||||| || ||||| ||||| |
|
|
| T |
20584724 |
caagaggatatgtattggcgacaaagagccaaaactcactggtatcgcgatggatacttgaacacgaaattctttca |
20584800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 78 - 349
Target Start/End: Complemental strand, 9817282 - 9817011
Alignment:
| Q |
78 |
atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt |
177 |
Q |
| |
|
|||||||| ||||||||| || |||| |||||||| | || ||||| ||||| ||||||||||||||||||||| | || || ||| |||||||||| |
|
|
| T |
9817282 |
atgacacacttgatgattaaataggacaagtattgatggcatcgagctaagactcactggtatcgtgatggtgaccttaacactaaaaattttcatgctg |
9817183 |
T |
|
| Q |
178 |
cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatgagtcaggttgcaaaaga |
277 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||||| ||||||| ||||| || || | ||||| ||||| ||| ||||||||||||||| |
|
|
| T |
9817182 |
cagccacgtctagaaaaaaggtaaaccgtattaattttttggaaaatgatgtgggggtcagagtttcagatgagcaaggtatgtgtcaggttgcaaaagg |
9817083 |
T |
|
| Q |
278 |
atattttgagactttatttttagagagcaatagtacttgtgcaccgattgttaatataatagaaaaagttgt |
349 |
Q |
| |
|
||||||||||| |||||||| ||||| |||| ||| |||||||| |||| | || |||||||||||||| |
|
|
| T |
9817082 |
gtattttgagacattatttttggagagtaatatcactcgtgcaccggttgtagacattatagaaaaagttgt |
9817011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 78 - 349
Target Start/End: Complemental strand, 10719207 - 10718936
Alignment:
| Q |
78 |
atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt |
177 |
Q |
| |
|
|||||||| ||||||||| || |||| |||||||| | || ||||| ||||| ||||||||||||||||||||| | || || ||| |||||||||| |
|
|
| T |
10719207 |
atgacacacttgatgattaaataggacaagtattgatggcatcgagctaagactcactggtatcgtgatggtgaccttaacactaaaaattttcatgctg |
10719108 |
T |
|
| Q |
178 |
cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatgagtcaggttgcaaaaga |
277 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||||| ||||||| ||||| || || | ||||| ||||| ||| ||||||||||||||| |
|
|
| T |
10719107 |
cagccacgtctagaaaaaaggtaaaccgtattaattttttggaaaatgatgtgggggtcagagtttcagatgagcaaggtatgtgtcaggttgcaaaagg |
10719008 |
T |
|
| Q |
278 |
atattttgagactttatttttagagagcaatagtacttgtgcaccgattgttaatataatagaaaaagttgt |
349 |
Q |
| |
|
||||||||||| |||||||| ||||| |||| ||| |||||||| |||| | || |||||||||||||| |
|
|
| T |
10719007 |
gtattttgagacattatttttggagagtaatatcactcgtgcaccggttgtagacattatagaaaaagttgt |
10718936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 303
Target Start/End: Original strand, 20483935 - 20484079
Alignment:
| Q |
159 |
accaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggca |
258 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| ||||||||||| || | | |||| ||||||| ||| | | ||| |||||||||| || | |
|
|
| T |
20483935 |
accaaattttttcatgcttctgccacgtttagaaaaaaggtaaaccgtatcacctccctggaaaatgatgtggggatttgtatttctgatgaacatggaa |
20484034 |
T |
|
| Q |
259 |
tgagtcaggttgcaaaagaatattttgagactttatttttagaga |
303 |
Q |
| |
|
|| ||||||| || ||||| ||||||| || ||||||||| |||| |
|
|
| T |
20484035 |
tgtgtcaggtagcgaaagattattttgcgaatttatttttggaga |
20484079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 21115432 - 21115520
Alignment:
| Q |
90 |
atgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttc |
178 |
Q |
| |
|
||||| ||||| ||||| |||||||| ||||| || || || || ||||||||||||||||| | || || || |||||||||||||| |
|
|
| T |
21115432 |
atgatacaagaagataaatattggcgtcagcgtgcgaaaactcattggtatcgtgatggtgatctaaacacgaagttttttcatgcttc |
21115520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 78 - 304
Target Start/End: Original strand, 15229641 - 15229866
Alignment:
| Q |
78 |
atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt |
177 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||| ||||| || ||||| || ||||| ||| |||||||| | ||||| ||| || |||||| |
|
|
| T |
15229641 |
atgacgcacttgattattcaagaggataagtattggcggcagcgtgctaagactcattggtaccgt-atggtgaccttaatactaaaaaaattgatgctt |
15229739 |
T |
|
| Q |
178 |
cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatgagtcaggttgcaaaaga |
277 |
Q |
| |
|
||||||| || |||| ||||||||||| |||||||||||||| ||||||| || || ||| || | ||||||||||| ||| | ||||||| |||| |
|
|
| T |
15229740 |
cagccacatcttgaaaaaaggtaaaccgtattaattttttggaaaatgatgtgggagtccgagtttcagatgaacaaggtatgcgctaggttgctaaagg |
15229839 |
T |
|
| Q |
278 |
atattttgagactttatttttagagag |
304 |
Q |
| |
|
|||||||| || |||||||| ||||| |
|
|
| T |
15229840 |
gtattttgaaacattatttttggagag |
15229866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 10505436 - 10505307
Alignment:
| Q |
81 |
acacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcag |
180 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||||| | || ||||| |||| || |||||||||| ||| || ||||||| |||||||||||||| || |
|
|
| T |
10505436 |
acacatctgatgattcaagaagataaatattggaggcaacgagccaagatccattggtatcgtgttggcgatatgaatactaaattttttcatgcctcta |
10505337 |
T |
|
| Q |
181 |
ccacgtcaagaaagaaggtaaaccgcatta |
210 |
Q |
| |
|
|||| || | |||||||||||||| ||||| |
|
|
| T |
10505336 |
ccacatctaaaaagaaggtaaaccacatta |
10505307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0985 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0985
Description:
Target: scaffold0985; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 540 - 438
Alignment:
| Q |
94 |
ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa |
193 |
Q |
| |
|
||||||| || | ||||||| | ||| |||| |||||||||||||| |||||||| ||| | ||||||||||| ||||||||||| || || || ||||| |
|
|
| T |
540 |
ttcaagaagacatgtattggaggcagagagctaagacacactggtaccgtgatggagaccttaataccaaattctttcatgcttccgcaacctccagaaa |
441 |
T |
|
| Q |
194 |
gaa |
196 |
Q |
| |
|
||| |
|
|
| T |
440 |
gaa |
438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 26815 - 26706
Alignment:
| Q |
94 |
ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa |
193 |
Q |
| |
|
||||||| |||| ||||||| | ||| |||| || |||||||||||||||||||| ||| | ||||||||||| || || ||||| || || || |||| |
|
|
| T |
26815 |
ttcaagaagatatgtattggaggcagagagctaaaacacactggtatcgtgatggagacctaaataccaaattcttccacgcttccgcaacctcctgaaa |
26716 |
T |
|
| Q |
194 |
gaaggtaaac |
203 |
Q |
| |
|
||| |||||| |
|
|
| T |
26715 |
gaaagtaaac |
26706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 34932178 - 34932284
Alignment:
| Q |
96 |
caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaaga |
195 |
Q |
| |
|
|||||||||| ||||||| ||||| |||| || || |||| |||||||||||| ||| |||| || ||||| || ||||| || || || || ||||||| |
|
|
| T |
34932178 |
caagaggatatgtattggagacagagagctaaaacgcacttgtatcgtgatggagacctgaacacaaaattcttccatgcgtccgcaacctccagaaaga |
34932277 |
T |
|
| Q |
196 |
aggtaaa |
202 |
Q |
| |
|
| ||||| |
|
|
| T |
34932278 |
aagtaaa |
34932284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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