View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14401_low_1 (Length: 658)
Name: NF14401_low_1
Description: NF14401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14401_low_1 |
 | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
| [»] scaffold0057 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold1619 (1 HSPs) |
| | |
|
| [»] scaffold0161 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 510; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 20 - 636
Target Start/End: Complemental strand, 8903230 - 8902613
Alignment:
| Q |
20 |
tactactccactaatccgacaccacaatatcggaggacctcctaaccttacatatgaaccagctgtatttttataataa-tttatgaaaattcaagaaga |
118 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
8903230 |
tactactctaccaatccgacaccacaatatcggaggacctcctaaccttacatatgaaccagctgtatttttgtaataaatttatgaaaattcaagaaga |
8903131 |
T |
|
| Q |
119 |
tcacccttacaaataattgctttcctcatatatgttaattgaccatatacaccaaacaatggctaacaataaggcaccattttggatggatgagtctctc |
218 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
8903130 |
tcacccttaaaaataatagctttcctcatatatgttcgttgaccatataaaccaaacaatggctaacaataaggcaccttttaggatggatgagtctctc |
8903031 |
T |
|
| Q |
219 |
atatcatctaccgtggatgagttatgtaaaccgttagatgattgatgttccacaaatttatcatacaccattaataccttattgtgttattcatatattt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8903030 |
atatcatctaccgtggatgagttatgtaaaccgttagatgattgatgttccacaaatgtatcatacaccattaatatcttattgtgttattcatatattt |
8902931 |
T |
|
| Q |
319 |
tatctctctttcccatctctcagcatctccataatgaaaaattcttaatggtactattcttttgccaacgaaatattctgattttttatttgcaaaaatc |
418 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8902930 |
tctctctcttccccatctctcagcatctccataatgaaaaattcttaatggtactattcttttgccatcgaaatattctgattttttatttgcaaaaatt |
8902831 |
T |
|
| Q |
419 |
actaaaggttgttaatatgcttctttaagactgtgcatgtcgatcaatctcaattatcacttagtttaattgtttctgagtttaaatgtaactctacaaa |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8902830 |
actaaaggttgttaatatgcttctttaagactgtgcatgtcgatcaatctcaattatcacctagtttaattgtttctgagtttaaatgtaactctacaaa |
8902731 |
T |
|
| Q |
519 |
taataatatagccaatttaatatttttaatatgaaactctacaaaactcgtgggtcgcacgggttagagtttagtatatttatttaaaaatctattcata |
618 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
8902730 |
taataatatattcaatttgatattttaaatataaaactctacaaaacttgtgggtcgcacgggttagagtttagtatatttattcaaaaatatattcata |
8902631 |
T |
|
| Q |
619 |
ttgaatctttgtttaata |
636 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
8902630 |
ttgaatctttgtttaata |
8902613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 8906562 - 8906399
Alignment:
| Q |
20 |
tactactccactaatccgacaccacaatatcggaggacctcctaaccttacatatgaaccagctgtatttttataataatttatgaaaattcaagaagat |
119 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| | || |
|
|
| T |
8906562 |
tactactccaccaatccgacaccacaaaatcggaggattttctaaccttacatatgaaccagctgtattttt-taataatttatgaaaatttaagcacat |
8906464 |
T |
|
| Q |
120 |
cacccttacaaataattgctttcctcatatatgttaattgaccatatacaccaaacaatggctaaca |
186 |
Q |
| |
|
|||| ||| ||||||| ||||||||| ||||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
8906463 |
cacctttaaaaataatagctttcctc--atatgctcattgaccatataaaccaaacaatggctaaca |
8906399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 420 - 565
Target Start/End: Original strand, 2792452 - 2792597
Alignment:
| Q |
420 |
ctaaaggttgttaatatgcttctttaagactgtgcatgtcgatcaatctcaattatcacttagtttaattgtttct--gagtttaaatgtaactctacaa |
517 |
Q |
| |
|
||||| ||| ||||| ||||| ||| | | |||| |||||||||| ||||||| |||| ||||||| ||||||||| ||| |||| |||||||||| || |
|
|
| T |
2792452 |
ctaaatgtttttaatttgcttttttgatattgtgtatgtcgatcactctcaatcatcatttagtttgattgtttctacgagcttaattgtaactctaaaa |
2792551 |
T |
|
| Q |
518 |
ataataatatagccaatttaatatttttaatatgaaactctacaaaac |
565 |
Q |
| |
|
||||||||| |||| ||||||| || || |||||||||||||||||| |
|
|
| T |
2792552 |
gtaataatat-gccactttaatacttata-tatgaaactctacaaaac |
2792597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 452 - 600
Target Start/End: Original strand, 44164855 - 44165003
Alignment:
| Q |
452 |
tgcatgtcgatcaatctcaattatcacttagtttaattgtttct--gagtttaaatgtaactctacaaataataatatagccaatttaatatttttaata |
549 |
Q |
| |
|
|||||||||| || ||||||| ||||| |||||| ||||||||| || ||||| |||||||||| || |||||||||||||| ||| | | | ||| |
|
|
| T |
44164855 |
tgcatgtcgaccactctcaatcatcacatagtttgattgtttctatgactttaagtgtaactctaaaattaataatatagccactttgaaa--taacata |
44164952 |
T |
|
| Q |
550 |
tgaaactctacaaaactcgtgggtcgcacgggttagagtttagtatattta |
600 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| |||| |||||| |
|
|
| T |
44164953 |
tgaaactctacaaaactcgtacatcatacgggttagagtctagtttattta |
44165003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 558
Target Start/End: Complemental strand, 17724541 - 17724434
Alignment:
| Q |
452 |
tgcatgtcgatcaatctcaattatcacttagtttaattgtttc--tgagtttaaatgtaactctacaaataataatatagccaatttaatatttttaata |
549 |
Q |
| |
|
|||||||| | || ||||||| |||||||||||| |||||||| ||| ||| ||||| |||||| || ||||||||||| || ||| ||| || | ||| |
|
|
| T |
17724541 |
tgcatgtctaccactctcaatcatcacttagtttgattgtttctatgactttgaatgtgactctaaaattaataatatagtcagttttatacttat-ata |
17724443 |
T |
|
| Q |
550 |
tgaaactct |
558 |
Q |
| |
|
||||||||| |
|
|
| T |
17724442 |
tgaaactct |
17724434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 2e-48; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 419 - 593
Target Start/End: Complemental strand, 30694516 - 30694342
Alignment:
| Q |
419 |
actaaaggttgttaatatgcttctttaagactgtgcatgtcgatcaatctcaattatcacttagtttaattgtttctgagtttaaatgtaactctacaaa |
518 |
Q |
| |
|
|||||| ||||||||| ||||||||| ||| |||| |||||||||| | |||||| ||||||| ||| | ||||||||||||||||||||||||||||| |
|
|
| T |
30694516 |
actaaatgttgttaatttgcttctttgagattgtgtatgtcgatcactttcaattgtcacttactttgaatgtttctgagtttaaatgtaactctacaag |
30694417 |
T |
|
| Q |
519 |
taataatatagccaatttaatatttttaatatgaaactctacaaaactcgtgggtcgcacgggttagagtttagt |
593 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
30694416 |
taataatatagccaatttgatattttatatatgaaactctacaaaacccgtgcatcgcacgggttagagtctagt |
30694342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 421 - 565
Target Start/End: Complemental strand, 46589729 - 46589585
Alignment:
| Q |
421 |
taaaggttgttaatatgcttctttaagactgtgcatgtcgatcaatctcaattatcacttagtttaattgtttctgagtttaaatgtaactctacaaata |
520 |
Q |
| |
|
|||| |||| |||| ||||||||| ||| ||||||||||||||||| |||||| ||||||| ||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
46589729 |
taaatgttgctaatttgcttctttgagattgtgcatgtcgatcaatttcaattgtcacttaatttgattgtttctgagtttaaacgtaactctacaaata |
46589630 |
T |
|
| Q |
521 |
ataatatagccaatttaatatttttaatatgaaactctacaaaac |
565 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||| |||||||| |
|
|
| T |
46589629 |
ataatatagccaatttgataatttatatatgaaactgtacaaaac |
46589585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 429 - 594
Target Start/End: Complemental strand, 45730460 - 45730302
Alignment:
| Q |
429 |
gttaatatgcttctttaagactgtgcatgtcgatcaatctcaattatcacttagtttaattgtttctgagtttaaatgtaactctacaaataataatata |
528 |
Q |
| |
|
|||||| ||||||||| ||| ||||||| ||||||| ||||||| || | |||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45730460 |
gttaatttgcttctttgagattgtgcatatcgatcactctcaatcgtcgcctagtttgattgttt-------taaatgtaactctacaaataataatata |
45730368 |
T |
|
| Q |
529 |
gccaatttaatatttttaatatgaaactctacaaaactcgtgggtcgcacgggttagagtttagta |
594 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || | ||| |||||||||||| ||||| |
|
|
| T |
45730367 |
atcaatttaatattttatatatgaaactctacaaaacccgcgcatcgaacgggttagagtatagta |
45730302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 452 - 540
Target Start/End: Complemental strand, 33813188 - 33813098
Alignment:
| Q |
452 |
tgcatgtcgatcaatctcaattatcacttagtttaattgtttct--gagtttaaatgtaactctacaaataataatatagccaatttaata |
540 |
Q |
| |
|
|||||||||| || ||||||| || ||||||||| ||||||||| || |||||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
33813188 |
tgcatgtcgaccattctcaatcattacttagtttgattgtttctatgactttaaatgtaactctaaaattaataatatagccactttaata |
33813098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 419 - 593
Target Start/End: Complemental strand, 27024138 - 27023964
Alignment:
| Q |
419 |
actaaaggttgttaatatgcttctttaagactgtgcatgtcgatcaatctcaattatcacttagtttaattgtttctgagtttaaatgtaactctacaaa |
518 |
Q |
| |
|
|||||| ||||||||| ||||||||| ||| ||||||||||||||| | |||||| ||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
27024138 |
actaaatgttgttaatttgcttctttgagattgtgcatgtcgatcactttcaattgtcacttagtttgattgtttttgagtttaaatgtaactctacacg |
27024039 |
T |
|
| Q |
519 |
taataatatagccaatttaatatttttaatatgaaactctacaaaactcgtgggtcgcacgggttagagtttagt |
593 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||| |||||| |||| ||||| |||||| ||| |||| |
|
|
| T |
27024038 |
taataatatagccaatttgatattttatatatgaaactctccaaaacccgtgcatcgcaagggttaaagtctagt |
27023964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 442 - 534
Target Start/End: Complemental strand, 19251484 - 19251391
Alignment:
| Q |
442 |
tttaagactgtgcatgtcgatcaatctcaattatcacttagtttaattgtttc--tgagtttaaatgtaactctacaaataataatatagccaat |
534 |
Q |
| |
|
||||||| | |||||||||| || ||||||| |||||||||||| |||||||| ||| ||| |||||||||||| || ||||| |||||||||| |
|
|
| T |
19251484 |
tttaagattttgcatgtcga-cactctcaatcatcacttagtttgattgtttctatgactttgaatgtaactctaaaattaatattatagccaat |
19251391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 4e-43; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 419 - 564
Target Start/End: Complemental strand, 15107556 - 15107411
Alignment:
| Q |
419 |
actaaaggttgttaatatgcttctttaagactgtgcatgtcgatcaatctcaattatcacttagtttaattgtttctgagtttaaatgtaactctacaaa |
518 |
Q |
| |
|
|||||| ||||||||| ||||||||| ||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
15107556 |
actaaatgttgttaatttgcttctttgagattgtgcatgtcgatcattctcaattgtcacttagtttgattgtttctgagtttaaatgtaactctacgat |
15107457 |
T |
|
| Q |
519 |
taataatatagccaatttaatatttttaatatgaaactctacaaaa |
564 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||| |||| |
|
|
| T |
15107456 |
taataatatagccaatttgatattttatttatgaaactctaaaaaa |
15107411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 419 - 526
Target Start/End: Original strand, 19403550 - 19403657
Alignment:
| Q |
419 |
actaaaggttgttaatatgcttctttaagactgtgcatgtcgatcaatctcaattatcacttagtttaattgtttctgagtttaaatgtaactctacaaa |
518 |
Q |
| |
|
|||||| ||||||||| ||||||||| ||| |||||||||| |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19403550 |
actaaatgttgttaatttgcttctttgagattgtgcatgtcaatcactctcaattgtcacttagtttgattgtttctgagtttaaatgtaactctacaat |
19403649 |
T |
|
| Q |
519 |
taataata |
526 |
Q |
| |
|
|||||||| |
|
|
| T |
19403650 |
taataata |
19403657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 492
Target Start/End: Complemental strand, 17970764 - 17970708
Alignment:
| Q |
436 |
tgcttctttaagactgtgcatgtcgatcaatctcaattatcacttagtttaattgtt |
492 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| | ||||||| |||| |||||| |
|
|
| T |
17970764 |
tgcttctttaagactgtgcatgtcaatcactctcattcatcacttggtttgattgtt |
17970708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 419 - 593
Target Start/End: Original strand, 37381750 - 37381925
Alignment:
| Q |
419 |
actaaaggttgttaatatgcttctttaagactgtgcatgtcgatcaatctcaattatcacttagtttaattgtttctgagtttaaatgtaactctacaaa |
518 |
Q |
| |
|
|||||| ||||||||| ||||||||| ||| |||| || ||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||| | |
|
|
| T |
37381750 |
actaaatgttgttaatttgcttctttgagattgtgtatatcgatcactctcaattgtcacttaatttgattgtttctgagtttaaatgtaactctacgat |
37381849 |
T |
|
| Q |
519 |
taataatatagccaatttaatatttttaatatgaaactctac-aaaactcgtgggtcgcacgggttagagtttagt |
593 |
Q |
| |
|
||||||||||| |||||| ||||||| |||||||||||||| ||||| |||| |||||||||| ||||| |||| |
|
|
| T |
37381850 |
taataatatagtcaatttgatattttatatatgaaactctacaaaaacacgtgcatcgcacgggtcagagtctagt |
37381925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 81; Significance: 9e-38; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 438 - 562
Target Start/End: Complemental strand, 18505 - 18381
Alignment:
| Q |
438 |
cttctttaagactgtgcatgtcgatcaatctcaattatcacttagtttaattgtttctgagtttaaatgtaactctacaaataataatatagccaattta |
537 |
Q |
| |
|
||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||| |
|
|
| T |
18505 |
cttctttaaaattgtgcatgtcgatcattctcaattgtcacttagtttaattgtttttgagtttaaaagtaactctataaataataatatagtcaattta |
18406 |
T |
|
| Q |
538 |
atatttttaatatgaaactctacaa |
562 |
Q |
| |
|
||||||| | |||||||||||||| |
|
|
| T |
18405 |
atattttatacatgaaactctacaa |
18381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 9e-38; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 438 - 562
Target Start/End: Complemental strand, 8191930 - 8191806
Alignment:
| Q |
438 |
cttctttaagactgtgcatgtcgatcaatctcaattatcacttagtttaattgtttctgagtttaaatgtaactctacaaataataatatagccaattta |
537 |
Q |
| |
|
||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||| |
|
|
| T |
8191930 |
cttctttaaaattgtgcatgtcgatcattctcaattgtcacttagtttaattgtttttgagtttaaaagtaactctataaataataatatagtcaattta |
8191831 |
T |
|
| Q |
538 |
atatttttaatatgaaactctacaa |
562 |
Q |
| |
|
||||||| | |||||||||||||| |
|
|
| T |
8191830 |
atattttatacatgaaactctacaa |
8191806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 419 - 502
Target Start/End: Original strand, 54421226 - 54421309
Alignment:
| Q |
419 |
actaaaggttgttaatatgcttctttaagactgtgcatgtcgatcaatctcaattatcacttagtttaattgtttctgagttta |
502 |
Q |
| |
|
|||||| ||||||| | ||||||||| ||| ||||||||||||| | |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
54421226 |
actaaatgttgttactttgcttctttgagattgtgcatgtcgataactctcaattgtcacttagtttgattgtttctgagttta |
54421309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 430 - 538
Target Start/End: Original strand, 22209618 - 22209728
Alignment:
| Q |
430 |
ttaatatgcttctttaagactgtgcatgtcgatcaatctcaattatcacttagtttaattgtttctg--agtttaaatgtaactctacaaataataatat |
527 |
Q |
| |
|
||||| ||||| ||| ||| | |||||||||| || ||||||| |||||||||||| ||||||| | | ||||||| |||||||| || ||||||||| |
|
|
| T |
22209618 |
ttaatttgcttttttgagattttgcatgtcgaccactctcaatcatcacttagtttgattgtttttatcactttaaatataactctaaaattaataatat |
22209717 |
T |
|
| Q |
528 |
agccaatttaa |
538 |
Q |
| |
|
||||| ||||| |
|
|
| T |
22209718 |
agccactttaa |
22209728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 536
Target Start/End: Original strand, 19878499 - 19878593
Alignment:
| Q |
444 |
taagactgtgcatgtcgatcaatctcaattatcacttagtttaattgtttc--tgagtttaaatgtaactctacaaataataatatagccaattt |
536 |
Q |
| |
|
||||| ||||||||||||||| ||||||| |||||||||||| || |||| ||||||| ||||||||| || |||||||||| ||||||| |
|
|
| T |
19878499 |
taagattgtgcatgtcgatcactctcaatcatcacttagtttgataatttctatgagtttgaatgtaactttaagggtaataatataaccaattt |
19878593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 19742242 - 19742183
Alignment:
| Q |
218 |
catatcatctaccgtggatgagttatgtaaaccgttagatgattgatgttccacaaatttat |
279 |
Q |
| |
|
||||||||||||||||||| |||||| | ||||||||||| | | |||||||||||||||| |
|
|
| T |
19742242 |
catatcatctaccgtggataagttatctgaaccgttagatca--gttgttccacaaatttat |
19742183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 279
Target Start/End: Original strand, 19797846 - 19797905
Alignment:
| Q |
218 |
catatcatctaccgtggatgagttatgtaaaccgttagatgattgatgttccacaaatttat |
279 |
Q |
| |
|
||||||||||||||||||| |||||| | ||||||||||| | | |||||||||||||||| |
|
|
| T |
19797846 |
catatcatctaccgtggataagttatctgaaccgttagatca--gttgttccacaaatttat |
19797905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 466 - 544
Target Start/End: Original strand, 60944 - 61022
Alignment:
| Q |
466 |
tctcaattatcacttagtttaattgtttctgagtttaaatgtaactctacaaataataatatagccaatttaatatttt |
544 |
Q |
| |
|
|||||||| ||||||||||| ||||||| | ||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
60944 |
tctcaattgtcacttagtttgattgtttataagtttaaatgtaactctacaattaataatatagccaatttgatatttt |
61022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 419 - 544
Target Start/End: Original strand, 11141197 - 11141320
Alignment:
| Q |
419 |
actaaaggttgttaatatgcttctttaagactgtgcatgtcgatcaatctcaattatcacttagtttaattgtttctgagtttaaatgtaactctacaaa |
518 |
Q |
| |
|
|||||| ||||||||| | ||||| | | | ||||||||||||||| |||||||| ||||||| ||| ||||||||||||||| ||||| ||| || | |
|
|
| T |
11141197 |
actaaatgttgttaatttacttctatgaaattgtgcatgtcgatcactctcaattgtcacttaatttgattgtttctgagttt--atgtagctcaacgat |
11141294 |
T |
|
| Q |
519 |
taataatatagccaatttaatatttt |
544 |
Q |
| |
|
||||||||||| |||||| ||||||| |
|
|
| T |
11141295 |
taataatatagtcaatttgatatttt |
11141320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 564
Target Start/End: Complemental strand, 5585933 - 5585834
Alignment:
| Q |
466 |
tctcaattatcacttagtttaattgtt--tctgagtttaaatgtaactctacaaataataatatagccaatttaatatttttaatatgaaactctacaaa |
563 |
Q |
| |
|
||||||| |||||||||||| |||||| | ||| ||| ||||||||||| || ||||||||||| | ||||||| || | ||||||||||||||||| |
|
|
| T |
5585933 |
tctcaatcatcacttagtttgattgttactatgactttggatgtaactctaaaattaataatatagttagtttaatacttat-atatgaaactctacaaa |
5585835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 427 - 511
Target Start/End: Complemental strand, 327499 - 327415
Alignment:
| Q |
427 |
ttgttaatatgcttctttaagactgtgcatgtcgatcaatctcaattatcacttagtttaattgtttctgagtttaaatgtaact |
511 |
Q |
| |
|
|||||||| ||||||||| | | |||| |||||||| | |||||||| ||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
327499 |
ttgttaatttgcttctttgaaattgtggatgtcgattactctcaattgtcacttagtctgattgtttctgagtttaaatgtaact |
327415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1619 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1619
Description:
Target: scaffold1619; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 419 - 544
Target Start/End: Complemental strand, 509 - 391
Alignment:
| Q |
419 |
actaaaggttgttaatatgcttctttaagactgtgcatgtcgatcaatctcaattatcacttagtttaattgtttctgagtttaaatgtaactctacaaa |
518 |
Q |
| |
|
|||||| ||||||||| ||||||||| ||| ||||| ||| |||||||| ||||||||||| ||||||| ||||||||||||||||| ||| | |
|
|
| T |
509 |
actaaatgttgttaatttgcttctttgagattgtgc-------tcactctcaattgtcacttagtttgattgtttatgagtttaaatgtaactttaccat |
417 |
T |
|
| Q |
519 |
taataatatagccaatttaatatttt |
544 |
Q |
| |
|
|||||||||| ||| ||| ||||||| |
|
|
| T |
416 |
taataatatatccagtttgatatttt |
391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 458 - 540
Target Start/End: Original strand, 17909765 - 17909849
Alignment:
| Q |
458 |
tcgatcaatctcaattatcacttagtttaattgtttct--gagtttaaatgtaactctacaaataataatatagccaatttaata |
540 |
Q |
| |
|
||||||| ||| ||| |||||||||||||||||||| | |||||| |||||||||||| || |||||||| | ||||||||||| |
|
|
| T |
17909765 |
tcgatcactcttaatcatcacttagtttaattgtttttatgagtttgaatgtaactctaaaagtaataatacaaccaatttaata |
17909849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 565
Target Start/End: Original strand, 11502634 - 11502734
Alignment:
| Q |
466 |
tctcaattatcacttagtttaattgtttct--gagtttaaatgtaactctacaaataataatatagccaatttaatatttttaatatgaaactctacaaa |
563 |
Q |
| |
|
||||||| ||||| |||||| ||||||||| || ||| |||||||||||| || ||||||| |||||| ||| ||| || | |||||||||||||| || |
|
|
| T |
11502634 |
tctcaatcatcacatagtttgattgtttctatgactttgaatgtaactctaaaattaataatgtagccactttgatacttat-atatgaaactctacgaa |
11502732 |
T |
|
| Q |
564 |
ac |
565 |
Q |
| |
|
|| |
|
|
| T |
11502733 |
ac |
11502734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 565
Target Start/End: Complemental strand, 41075232 - 41075132
Alignment:
| Q |
466 |
tctcaattatcacttagtttaattgtttc--tgagtttaaatgtaactctacaaataataatatagccaatttaatatttttaatatgaaactctacaaa |
563 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||| ||| |||||||||||| | ||||||||||| || ||| ||| || | |||||||| |||||||| |
|
|
| T |
41075232 |
tctcaatcatcacttagtttgattgtttctatgactttgaatgtaactctaaagttaataatatagtcagtttgatacttat-atatgaaattctacaaa |
41075134 |
T |
|
| Q |
564 |
ac |
565 |
Q |
| |
|
|| |
|
|
| T |
41075133 |
ac |
41075132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 564
Target Start/End: Complemental strand, 26945 - 26841
Alignment:
| Q |
461 |
atcaatctcaattatcacttagtttaattgtttct--gagtttaaatgtaactctacaaataataatatagccaatttaatatttttaatatgaaactct |
558 |
Q |
| |
|
|||| ||||||| ||||| |||||| || |||||| |||||||||| |||| ||| || |||||||||| ||||||||||| || | |||||||||||| |
|
|
| T |
26945 |
atcactctcaatcatcacctagtttgatcgtttctatgagtttaaatataacactaaaagtaataatataaccaatttaatacttat-atatgaaactct |
26847 |
T |
|
| Q |
559 |
acaaaa |
564 |
Q |
| |
|
||||| |
|
|
| T |
26846 |
gcaaaa |
26841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 564
Target Start/End: Complemental strand, 7832 - 7764
Alignment:
| Q |
495 |
tgagtttaaatgtaactctacaaataataatatagccaatttaatatttttaatatgaaactctacaaaa |
564 |
Q |
| |
|
||||||||||| |||| ||| || |||||||||| ||||||||||| || | |||||||| ||||||||| |
|
|
| T |
7832 |
tgagtttaaatataaccctaaaagtaataatataaccaatttaatacttat-atatgaaattctacaaaa |
7764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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