View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14401_low_2 (Length: 291)

Name: NF14401_low_2
Description: NF14401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14401_low_2
NF14401_low_2
[»] chr2 (1 HSPs)
chr2 (55-281)||(7314051-7314277)
[»] chr3 (2 HSPs)
chr3 (44-281)||(11136570-11136807)
chr3 (55-87)||(11136800-11136832)
[»] scaffold0010 (1 HSPs)
scaffold0010 (184-281)||(245939-246036)
[»] chr7 (1 HSPs)
chr7 (184-281)||(37282162-37282259)
[»] scaffold0716 (2 HSPs)
scaffold0716 (55-123)||(2565-2633)
scaffold0716 (235-281)||(7246-7292)
[»] scaffold0894 (1 HSPs)
scaffold0894 (235-281)||(1-47)
[»] chr5 (1 HSPs)
chr5 (184-254)||(40933961-40934032)
[»] chr1 (1 HSPs)
chr1 (184-259)||(23348366-23348440)
[»] chr6 (1 HSPs)
chr6 (184-254)||(11232957-11233029)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 55 - 281
Target Start/End: Complemental strand, 7314277 - 7314051
Alignment:
Q  55 acgatatctagtatctatttatgctgcttctgcataccacacggtttctatatatataaattaaaaataagacttctggtgatatataacaaaaggtaat 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7314277 acgatatctagtatctatttatgctgcttctgcataccacacggtttctatatatataaattaaaaataagacttctggtgatatataacaaaaggtaat 7314178  T
Q  155 ggtagtttttgatatagtttccaagcacttttctcatggacatattttttgaagtcgtatttgatggcatagttgttttatcctgttgtaagttccatta 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7314177 ggtagtttttgatatagtttccaagcacttttctcatggacatattttttgaagtcgtatttgatggcataattgttttatcctgttgtaagttccatta 7314078  T
Q  255 tcaaatattgacctatatgtgcctttg 281  Q
    |||||||||||||||||||||||||||    
T  7314077 tcaaatattgacctatatgtgcctttg 7314051  T

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Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 44 - 281
Target Start/End: Complemental strand, 11136807 - 11136570
Alignment:
Q  44 gcttctgcgtaacgatatctagtatctatttatgctgcttctgcataccacacggtttctatatatataaattaaaaataagacttctggtgatatataa 143  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11136807 gcttctgcgtaacgatttctagtatctatttatgctgcttctgcataccacacgatttctatatatataaattaaaaataagacttctggtgatatataa 11136708  T
Q  144 caaaaggtaatggtagtttttgatatagtttccaagcacttttctcatggacatattttttgaagtcgtatttgatggcatagttgttttatcctgttgt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||    
T  11136707 caaaaggtaatggtagtttttgatatagtttccaagcacttttctcatggacatattttttgaagtcgtgtttgatggcgtaattgttttatcctgttgt 11136608  T
Q  244 aagttccattatcaaatattgacctatatgtgcctttg 281  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11136607 aagttccattatcaaatattgacctatatgtgcctttg 11136570  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 11136832 - 11136800
Alignment:
Q  55 acgatatctagtatctatttatgctgcttctgc 87  Q
    ||||||||||||||||||||||| |||||||||    
T  11136832 acgatatctagtatctatttatgttgcttctgc 11136800  T

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Target: scaffold0010 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 245939 - 246036
Alignment:
Q  184 tttctcatggacatattttttgaagtcgtatttgatggcatagttgttttatcctgttgtaagttccattatcaaatattgacctatatgtgcctttg 281  Q
    ||||||||||||||||||||| |||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  245939 tttctcatggacatattttttaaagtcgtatttgatggcagaattgttttgtcctgttgtaagttccattatcaaatattgacctatatgtgcatttg 246036  T

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Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 37282259 - 37282162
Alignment:
Q  184 tttctcatggacatattttttgaagtcgtatttgatggcatagttgttttatcctgttgtaagttccattatcaaatattgacctatatgtgcctttg 281  Q
    ||||||||||||||||||||| |||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||    
T  37282259 tttctcatggacatattttttaaagtcgtatttgatggcagaattgttttgtcccgttgtaagttccattatcaaatattgacctatatgtgcatttg 37282162  T

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Target: scaffold0716 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 2565 - 2633
Alignment:
Q  55 acgatatctagtatctatttatgctgcttctgcataccacacggtttctatatatataaattaaaaata 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2565 acgatatctagtatctatttatgctgcttctgcataccacacggtttctatatatatcaattaaaaata 2633  T

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Target: scaffold0716; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 7246 - 7292
Alignment:
Q  235 tcctgttgtaagttccattatcaaatattgacctatatgtgcctttg 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7246 tcctgttgtaagttccattatcaaatattgacctatatgtgcctttg 7292  T

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Target: scaffold0894 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0894
Description:

Target: scaffold0894; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 1 - 47
Alignment:
Q  235 tcctgttgtaagttccattatcaaatattgacctatatgtgcctttg 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1 tcctgttgtaagttccattatcaaatattgacctatatgtgcctttg 47  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 40933961 - 40934032
Alignment:
Q  184 tttctcatggacatattttttgaa-gtcgtatttgatggcatagttgttttatcctgttgtaagttccatta 254  Q
    ||||||||||||||||||||| || |||||||||||| ||  | ||||||| |||| |||||| ||||||||    
T  40933961 tttctcatggacatatttttttaaagtcgtatttgatagctgaattgttttgtccttttgtaaattccatta 40934032  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 23348366 - 23348440
Alignment:
Q  184 tttctcatggacatattttttgaagtcgtatttgatggcatagttgttttatcctgttgtaagttccattatcaaa 259  Q
    ||||||||||||| ||||||| ||||||||||||||   | | ||||||| |  ||||||||||||||||||||||    
T  23348366 tttctcatggacagatttttt-aagtcgtatttgatataaaaattgttttgttttgttgtaagttccattatcaaa 23348440  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 11232957 - 11233029
Alignment:
Q  184 tttctcatggacatattttttgaa--gtcgtatttgatggcatagttgttttatcctgttgtaagttccatta 254  Q
    |||||||||||| |||||||||||  |||||||||||| ||  | ||||||| |||| |||||| ||||||||    
T  11232957 tttctcatggacgtattttttgaaaagtcgtatttgatagctgaattgttttgtccttttgtaaattccatta 11233029  T

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