View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14401_low_3 (Length: 244)
Name: NF14401_low_3
Description: NF14401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14401_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 700618 - 700832
Alignment:
| Q |
8 |
cgaagaatataacatacttgaaaggattctcccaaggaataatcattgttggagaatttaaagggaggaaagttcaagaagctaagccattgattaggag |
107 |
Q |
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| T |
700618 |
cgaaggatataacatacttgaaaggattctcccaaggaataatcattgttggagaatttaaagggaggaaagttcaagaagctaagccattgattaggag |
700717 |
T |
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| Q |
108 |
aaagcttttggaaacaggtgagtcttcgactttacatgcctttttgtaaatgttttagtgtgctttcctttaaaaattaccaatataatgcaagtttcaa |
207 |
Q |
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| T |
700718 |
aaagcttttggaaacaggtgagtcttcgactttacatgcctttttgtaaatgttttagtgtgctttcctttaaaaattaccaatataatgcaagtttcaa |
700817 |
T |
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| Q |
208 |
agaattcactaactt |
222 |
Q |
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| T |
700818 |
agaattcactaactt |
700832 |
T |
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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 23261495 - 23261321
Alignment:
| Q |
18 |
aacatacttgaaaggattctcccaaggaataatcattgttggagaatttaaagggaggaaagttcaagaagctaagccattgattaggagaaagcttttg |
117 |
Q |
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||||||||||||||||||| | | |||| || ||||| ||||||||||||| | ||||||||| ||||||||||| ||||||||||| ||||||||| |
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| T |
23261495 |
aacatacttgaaaggattcactgacggaactatgattgtcggagaatttaaagataagaaagttcaggaagctaagcccttgattaggagcaagcttttg |
23261396 |
T |
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| Q |
118 |
gaaacaggtgagtcttcgactttacatgcctttttgtaaatgttttagtgtgctttcctttaaaaattaccaatat |
193 |
Q |
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| T |
23261395 |
gaaacaggttagtattctactaaacaag-ctttcttttactcttttagtgtaatttcctttaaaaattatcaatat |
23261321 |
T |
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