View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14402_high_2 (Length: 435)
Name: NF14402_high_2
Description: NF14402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14402_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 20 - 418
Target Start/End: Complemental strand, 44359281 - 44358883
Alignment:
| Q |
20 |
aatagtaatacactgatacaacatacataccacaaaacaagcacagtatgatttcagcggcagaaatgacttggtgggattcataaaggaaatccatgct |
119 |
Q |
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| T |
44359281 |
aatagtaatacactgatacaacatacataccacaaaacaagcacagtatgatttcagcggcagaaatgacttggtgggattcataaaggaaatccatgct |
44359182 |
T |
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| Q |
120 |
caaggattgtacgtttccctcaggattggacctttcatcgagagtgaatggaattacgggtactttcactaacttacataaaaatgtactcaattttatt |
219 |
Q |
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| T |
44359181 |
caaggattgtacgtttccctcaggattggacctttcatcgagagtgaatggaattacgggtagtttcactaacttacataaaaatgtactcaattttatt |
44359082 |
T |
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| Q |
220 |
cccaattactaagccaaaattgtcatctctaacacataataatgctaactgctaaaattgaaggggattcccattttggctacatgatgtccctggtatt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44359081 |
cccaattactaagccaaaattgtcatctctaacacataataatgctaactgctaaaattgaaggggattcccattttggctacatgatgtccctggtatt |
44358982 |
T |
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| Q |
320 |
gtctaccgaacagacaatgagccattcaaggtacatttagctagcatactcttttggccacacttatttgttgtgttacgttaatactaacatgtctat |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44358981 |
gtctaccgaacagacaatgagccattcaaggtacatttagctagcatactcttttggccacacttatttgttgtgttacgttaatactaacatgtctat |
44358883 |
T |
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