View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14402_high_8 (Length: 215)

Name: NF14402_high_8
Description: NF14402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14402_high_8
NF14402_high_8
[»] chr6 (12 HSPs)
chr6 (13-196)||(34057950-34058133)
chr6 (25-74)||(10335378-10335427)
chr6 (28-76)||(1357753-1357801)
chr6 (37-81)||(7038849-7038893)
chr6 (35-81)||(10158002-10158048)
chr6 (35-80)||(6751878-6751923)
chr6 (25-70)||(29449689-29449734)
chr6 (19-76)||(30600550-30600607)
chr6 (32-64)||(4343282-4343314)
chr6 (35-75)||(19369835-19369875)
chr6 (37-81)||(26402675-26402719)
chr6 (34-74)||(34882802-34882842)
[»] chr1 (9 HSPs)
chr1 (28-84)||(18556018-18556074)
chr1 (37-81)||(50195460-50195504)
chr1 (17-71)||(26462650-26462704)
chr1 (35-75)||(31667443-31667483)
chr1 (35-81)||(40158405-40158451)
chr1 (33-82)||(2784572-2784621)
chr1 (17-74)||(13709186-13709243)
chr1 (28-81)||(19637779-19637832)
chr1 (48-80)||(51595800-51595832)
[»] chr7 (11 HSPs)
chr7 (26-81)||(10893864-10893919)
chr7 (25-72)||(43160492-43160539)
chr7 (25-69)||(650527-650571)
chr7 (25-81)||(37775990-37776046)
chr7 (37-76)||(6824237-6824276)
chr7 (28-66)||(18750887-18750925)
chr7 (36-81)||(25956464-25956509)
chr7 (37-74)||(46550793-46550830)
chr7 (37-81)||(1745185-1745229)
chr7 (37-81)||(36013793-36013837)
chr7 (25-69)||(37610056-37610100)
[»] chr8 (10 HSPs)
chr8 (25-75)||(31681831-31681881)
chr8 (25-74)||(32691751-32691800)
chr8 (17-81)||(1433345-1433409)
chr8 (37-80)||(900460-900503)
chr8 (33-80)||(8917532-8917579)
chr8 (17-64)||(24758532-24758579)
chr8 (37-76)||(31548293-31548332)
chr8 (37-75)||(10002164-10002202)
chr8 (35-83)||(8917233-8917281)
chr8 (35-87)||(13844585-13844637)
[»] chr3 (7 HSPs)
chr3 (35-82)||(20691337-20691384)
chr3 (28-74)||(1502585-1502631)
chr3 (17-68)||(19323456-19323507)
chr3 (33-74)||(4946206-4946247)
chr3 (37-81)||(14338478-14338522)
chr3 (35-75)||(44427859-44427899)
chr3 (25-73)||(45382751-45382799)
[»] chr4 (10 HSPs)
chr4 (25-69)||(45615422-45615466)
chr4 (35-70)||(683070-683105)
chr4 (35-69)||(9988706-9988740)
chr4 (23-69)||(25400847-25400893)
chr4 (35-81)||(33950154-33950200)
chr4 (35-81)||(44362684-44362730)
chr4 (37-70)||(21732366-21732399)
chr4 (33-69)||(29388373-29388409)
chr4 (25-69)||(46981469-46981513)
chr4 (34-74)||(53622586-53622626)
[»] chr2 (4 HSPs)
chr2 (25-64)||(32843721-32843760)
chr2 (28-74)||(18622426-18622472)
chr2 (35-81)||(43586000-43586046)
chr2 (17-74)||(22131256-22131313)
[»] chr5 (8 HSPs)
chr5 (27-65)||(645342-645380)
chr5 (35-77)||(10009844-10009886)
chr5 (37-74)||(10010574-10010611)
chr5 (24-77)||(27239552-27239605)
chr5 (48-81)||(27253406-27253439)
chr5 (37-81)||(19167571-19167615)
chr5 (34-74)||(25652303-25652343)
chr5 (37-81)||(27253305-27253349)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 34057950 - 34058133
Alignment:
Q  13 cacagacactaatagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgtcagacacatgtcgaacaccatacatgtcttcaataaaa 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34057950 cacaaacactaatagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgtcagacacatgtcgaacaccatacatgtcttcaatcaaa 34058049  T
Q  113 aatgtcagtgcaacaatcctagaatcaatttgagcttcaacaaactaaccggatcaatcccaaaactacaagccaacttactaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34058050 aatgtcagtgcaacaatcctagaatcaatttgagcttcaacaaactaaccggatcaatcccaaaactacaacccaacttactaa 34058133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 10335427 - 10335378
Alignment:
Q  25 tagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgt 74  Q
    ||||||| | |||||||||||||||||| |||||||| ||||||||||||    
T  10335427 tagtaatttgagaaaatgacataattgaatgtaatcagatgtgtcggtgt 10335378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 1357801 - 1357753
Alignment:
Q  28 taatataagaaaatgacataattgactgtaatcacatgtgtcggtgtca 76  Q
    ||||||||||||| |||||||||||  ||||||||||||| ||||||||    
T  1357801 taatataagaaaaagacataattgatcgtaatcacatgtgccggtgtca 1357753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 7038849 - 7038893
Alignment:
Q  37 aaaatgacataattgactgtaatcacatgtgtcggtgtcagacac 81  Q
    ||||| ||| |||||| ||||||||||||||||||||||||||||    
T  7038849 aaaataacaaaattgattgtaatcacatgtgtcggtgtcagacac 7038893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 10158002 - 10158048
Alignment:
Q  35 agaaaatgacataattgactgtaatcacatgtgtcggtgtcagacac 81  Q
    |||||||||||||||| | |||||||||||||||||||  |||||||    
T  10158002 agaaaatgacataattcaatgtaatcacatgtgtcggtaccagacac 10158048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 6751923 - 6751878
Alignment:
Q  35 agaaaatgacataattgactgtaatcacatgtgtcggtgtcagaca 80  Q
    |||||||||||||||| | |||||||||| ||||||||||| ||||    
T  6751923 agaaaatgacataattcaatgtaatcacaagtgtcggtgtcggaca 6751878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 29449689 - 29449734
Alignment:
Q  25 tagtaatataagaaaatgacataattgactgtaatcacatgtgtcg 70  Q
    ||||||| | ||||||| |||||||||| |||||||||||||||||    
T  29449689 tagtaatttcagaaaataacataattgaatgtaatcacatgtgtcg 29449734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 30600550 - 30600607
Alignment:
Q  19 cactaatagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgtca 76  Q
    ||||| ||||||| ||||||||||||||||| ||  ||||||| ||||||| ||||||    
T  30600550 cactagtagtaatttaagaaaatgacataatagaacgtaatcatatgtgtcagtgtca 30600607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 4343282 - 4343314
Alignment:
Q  32 ataagaaaatgacataattgactgtaatcacat 64  Q
    ||||||||||||||||||||| |||||||||||    
T  4343282 ataagaaaatgacataattgaatgtaatcacat 4343314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 19369835 - 19369875
Alignment:
Q  35 agaaaatgacataattgactgtaatcacatgtgtcggtgtc 75  Q
    |||||||||||||||| | |||||||||| |||||||||||    
T  19369835 agaaaatgacataattcaatgtaatcacaagtgtcggtgtc 19369875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 26402719 - 26402675
Alignment:
Q  37 aaaatgacataattgactgtaatcacatgtgtcggtgtcagacac 81  Q
    |||||||||||||| | |||||||||| ||||||||||| |||||    
T  26402719 aaaatgacataattcagtgtaatcacaagtgtcggtgtcggacac 26402675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 34882842 - 34882802
Alignment:
Q  34 aagaaaatgacataattgactgtaatcacatgtgtcggtgt 74  Q
    ||||||||||||||||||| |||||| ||||| ||||||||    
T  34882842 aagaaaatgacataattgaatgtaattacatgcgtcggtgt 34882802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 18556074 - 18556018
Alignment:
Q  28 taatataagaaaatgacataattgactgtaatcacatgtgtcggtgtcagacacatg 84  Q
    |||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18556074 taatttaataaaatgacataattgactgtaatcacatgtgtcagtgtcagacacatg 18556018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 50195504 - 50195460
Alignment:
Q  37 aaaatgacataattgactgtaatcacatgtgtcggtgtcagacac 81  Q
    |||||||||||||||| |||||||||||||||||||||| |||||    
T  50195504 aaaatgacataattgaatgtaatcacatgtgtcggtgtcggacac 50195460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 26462704 - 26462650
Alignment:
Q  17 gacactaatagtaatataagaaaatgacataattgactgtaatcacatgtgtcgg 71  Q
    |||||| ||| |||| ||||||||||| |||||||| ||||||||||||||||||    
T  26462704 gacactgataataatttaagaaaatgaaataattgaatgtaatcacatgtgtcgg 26462650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 31667443 - 31667483
Alignment:
Q  35 agaaaatgacataattgactgtaatcacatgtgtcggtgtc 75  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  31667443 agaaaatgacataattaaatgtaatcacatgtgtcggtgtc 31667483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 40158451 - 40158405
Alignment:
Q  35 agaaaatgacataattgactgtaatcacatgtgtcggtgtcagacac 81  Q
    |||||||||||||| ||| || |||||||||||||||||| ||||||    
T  40158451 agaaaatgacataaatgaatgaaatcacatgtgtcggtgttagacac 40158405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 2784572 - 2784621
Alignment:
Q  33 taagaaaatgacataattgactgtaatcacatgtgtcggtgtcagacaca 82  Q
    ||||||||| |||||||||| | |||| | ||||||||||||||||||||    
T  2784572 taagaaaatcacataattgagtataattatatgtgtcggtgtcagacaca 2784621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 13709186 - 13709243
Alignment:
Q  17 gacactaatagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgt 74  Q
    |||||| ||||| || ||||||||||||| |||||| |||||||| ||||||| ||||    
T  13709186 gacactgatagtgatttaagaaaatgacaaaattgaatgtaatcagatgtgtcagtgt 13709243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 19637779 - 19637832
Alignment:
Q  28 taatataagaaaatgacataattgactgtaatcacatgtgtcggtgtcagacac 81  Q
    |||| |||||||||||||| ||| | |||||||| ||||||||||||| |||||    
T  19637779 taatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcggacac 19637832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 51595800 - 51595832
Alignment:
Q  48 attgactgtaatcacatgtgtcggtgtcagaca 80  Q
    ||||| |||||||||||||||||||||||||||    
T  51595800 attgaatgtaatcacatgtgtcggtgtcagaca 51595832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 10893919 - 10893864
Alignment:
Q  26 agtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgtcagacac 81  Q
    |||||| |||||||||||||||||||| ||||||||||||||| |||||| |||||    
T  10893919 agtaatttaagaaaatgacataattgaatgtaatcacatgtgttggtgtctgacac 10893864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 43160492 - 43160539
Alignment:
Q  25 tagtaatataagaaaatgacataattgactgtaatcacatgtgtcggt 72  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||||    
T  43160492 tagtaatttaagaaaataacataattgaatgtaatcacatgtgtcggt 43160539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 650527 - 650571
Alignment:
Q  25 tagtaatataagaaaatgacataattgactgtaatcacatgtgtc 69  Q
    ||||||| |||||||||||||||||||| || |||||||||||||    
T  650527 tagtaatttaagaaaatgacataattgaatgcaatcacatgtgtc 650571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 37775990 - 37776046
Alignment:
Q  25 tagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgtcagacac 81  Q
    ||||||| | |||||||||||||||| | |||||||||||||||| |||| ||||||    
T  37775990 tagtaatttgagaaaatgacataattaaatgtaatcacatgtgtcagtgtaagacac 37776046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 6824237 - 6824276
Alignment:
Q  37 aaaatgacataattgactgtaatcacatgtgtcggtgtca 76  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  6824237 aaaatgacataattgaatgtaatcacatgtgtcgatgtca 6824276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 18750887 - 18750925
Alignment:
Q  28 taatataagaaaatgacataattgactgtaatcacatgt 66  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  18750887 taatttaagaaaatgacataattgaatgtaatcacatgt 18750925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 25956464 - 25956509
Alignment:
Q  36 gaaaatgacataattgactgtaatcacatgtgtcggtgtcagacac 81  Q
    ||||||||||||||| | |||||||||| ||||||||||| |||||    
T  25956464 gaaaatgacataattcaatgtaatcacaagtgtcggtgtcggacac 25956509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 46550830 - 46550793
Alignment:
Q  37 aaaatgacataattgactgtaatcacatgtgtcggtgt 74  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  46550830 aaaatgacataattgagtgtaatcacatgtgtcagtgt 46550793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 1745185 - 1745229
Alignment:
Q  37 aaaatgacataattgactgtaatcacatgtgtcggtgtcagacac 81  Q
    |||||| ||||||||| || |||||||||||| ||||||||||||    
T  1745185 aaaatggcataattgaatggaatcacatgtgttggtgtcagacac 1745229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 36013837 - 36013793
Alignment:
Q  37 aaaatgacataattgactgtaatcacatgtgtcggtgtcagacac 81  Q
    |||||||||||||| | |||||||||| |||||||||||| ||||    
T  36013837 aaaatgacataattcaatgtaatcacacgtgtcggtgtcaaacac 36013793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 37610100 - 37610056
Alignment:
Q  25 tagtaatataagaaaatgacataattgactgtaatcacatgtgtc 69  Q
    |||||| ||| ||||||||||||| ||| ||||||||||||||||    
T  37610100 tagtaacatatgaaaatgacataactgaatgtaatcacatgtgtc 37610056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 31681881 - 31681831
Alignment:
Q  25 tagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgtc 75  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||||||    
T  31681881 tagtaatttaagaaaatgacataattgaatgaaatcacatgtgtcggtgtc 31681831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 32691751 - 32691800
Alignment:
Q  25 tagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgt 74  Q
    ||||||| |||||||||||||||||||| |||||||||||||||| ||||    
T  32691751 tagtaatttaagaaaatgacataattgaatgtaatcacatgtgtcagtgt 32691800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 1433345 - 1433409
Alignment:
Q  17 gacactaatagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgtcagacac 81  Q
    ||||||||||||||| | |||||||||||||||  | |||||| ||||| ||||||||| |||||    
T  1433345 gacactaatagtaatttgagaaaatgacataatccaatgtaataacatgcgtcggtgtcggacac 1433409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 900503 - 900460
Alignment:
Q  37 aaaatgacataattgactgtaatcacatgtgtcggtgtcagaca 80  Q
    ||||||||||||| || ||||||||||| |||||||||||||||    
T  900503 aaaatgacataatagaatgtaatcacatatgtcggtgtcagaca 900460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 8917579 - 8917532
Alignment:
Q  33 taagaaaatgacataattgactgtaatcacatgtgtcggtgtcagaca 80  Q
    |||||||||||||||||||| |||||||| |||||||  |||||||||    
T  8917579 taagaaaatgacataattgaatgtaatcagatgtgtccatgtcagaca 8917532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 24758579 - 24758532
Alignment:
Q  17 gacactaatagtaatataagaaaatgacataattgactgtaatcacat 64  Q
    |||||| |||||||| |||||||||||||||||||| | |||||||||    
T  24758579 gacacttatagtaatttaagaaaatgacataattgaatataatcacat 24758532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 31548332 - 31548293
Alignment:
Q  37 aaaatgacataattgactgtaatcacatgtgtcggtgtca 76  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  31548332 aaaatgacataattcaatgtaatcacatgtgtcggtgtca 31548293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 10002202 - 10002164
Alignment:
Q  37 aaaatgacataattgactgtaatcacatgtgtcggtgtc 75  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  10002202 aaaatgacataatttaatgtaatcacatgtgtcggtgtc 10002164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 8917281 - 8917233
Alignment:
Q  35 agaaaatgacataattgactgtaatcacatgtgtcggtgtcagacacat 83  Q
    ||||||| |||||||||| |||||||| |||||||  ||||||||||||    
T  8917281 agaaaataacataattgaatgtaatcagatgtgtccatgtcagacacat 8917233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 13844637 - 13844585
Alignment:
Q  35 agaaaatgacataattgactgtaatcacatgtgtcggtgtcagacacatgtcg 87  Q
    ||||||| |||||||||| |||||| | ||||||||||||| ||||| |||||    
T  13844637 agaaaatcacataattgagtgtaattatatgtgtcggtgtcggacacttgtcg 13844585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 20691337 - 20691384
Alignment:
Q  35 agaaaatgacataattgactgtaatcacatgtgtcggtgtcagacaca 82  Q
    |||||||||||||||| | |||||||| ||||||||||||||||||||    
T  20691337 agaaaatgacataattcagtgtaatcatatgtgtcggtgtcagacaca 20691384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 1502585 - 1502631
Alignment:
Q  28 taatataagaaaatgacataattgactgtaatcacatgtgtcggtgt 74  Q
    |||| |||||||||||||||||||| |||||||||||||||| ||||    
T  1502585 taatctaagaaaatgacataattgaatgtaatcacatgtgtctgtgt 1502631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 19323507 - 19323456
Alignment:
Q  17 gacactaatagtaatataagaaaatgacataattgactgtaatcacatgtgt 68  Q
    |||||| |||||||| | |||||||||||||||||| | |||||||||||||    
T  19323507 gacactgatagtaatttgagaaaatgacataattgaatttaatcacatgtgt 19323456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 4946247 - 4946206
Alignment:
Q  33 taagaaaatgacataattgactgtaatcacatgtgtcggtgt 74  Q
    ||||||||||| |||||||| |||||||||||||||| ||||    
T  4946247 taagaaaatgatataattgaatgtaatcacatgtgtctgtgt 4946206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 14338522 - 14338478
Alignment:
Q  37 aaaatgacataattgactgtaatcacatgtgtcggtgtcagacac 81  Q
    |||||||||||||| | ||||||||||  ||||||||||||||||    
T  14338522 aaaatgacataattcaatgtaatcacaaatgtcggtgtcagacac 14338478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 44427859 - 44427899
Alignment:
Q  35 agaaaatgacataattgactgtaatcacatgtgtcggtgtc 75  Q
    |||||||||||||||  | ||||||||||||||||||||||    
T  44427859 agaaaatgacataatccaatgtaatcacatgtgtcggtgtc 44427899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 45382751 - 45382799
Alignment:
Q  25 tagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtg 73  Q
    ||||||| ||||||||| ||||| |||| ||||||||||| ||||||||    
T  45382751 tagtaatttaagaaaataacatatttgaatgtaatcacatatgtcggtg 45382799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 45615466 - 45615422
Alignment:
Q  25 tagtaatataagaaaatgacataattgactgtaatcacatgtgtc 69  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||    
T  45615466 tagtaatttaagaaaatgacataattgaacgtaatcacatgtgtc 45615422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 683070 - 683105
Alignment:
Q  35 agaaaatgacataattgactgtaatcacatgtgtcg 70  Q
    |||||||||||||||||| |||||||||||||||||    
T  683070 agaaaatgacataattgaatgtaatcacatgtgtcg 683105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 9988740 - 9988706
Alignment:
Q  35 agaaaatgacataattgactgtaatcacatgtgtc 69  Q
    |||||||||||||||||| ||||||||||||||||    
T  9988740 agaaaatgacataattgaatgtaatcacatgtgtc 9988706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 25400847 - 25400893
Alignment:
Q  23 aatagtaatataagaaaatgacataattgactgtaatcacatgtgtc 69  Q
    ||||||||| |||||||||||||||||| | ||| ||||||||||||    
T  25400847 aatagtaatttaagaaaatgacataattaaatgttatcacatgtgtc 25400893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 33950154 - 33950200
Alignment:
Q  35 agaaaatgacataattgactgtaatcacatgtgtcggtgtcagacac 81  Q
    ||||||| |||||||| | |||||||| |||||||||||||||||||    
T  33950154 agaaaatcacataatttaatgtaatcatatgtgtcggtgtcagacac 33950200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 44362684 - 44362730
Alignment:
Q  35 agaaaatgacataattgactgtaatcacatgtgtcggtgtcagacac 81  Q
    |||||||||||||||| | |||||||||| |||| ||||||||||||    
T  44362684 agaaaatgacataatttaatgtaatcacaagtgttggtgtcagacac 44362730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 21732399 - 21732366
Alignment:
Q  37 aaaatgacataattgactgtaatcacatgtgtcg 70  Q
    |||||||||||||||| |||||||||||||||||    
T  21732399 aaaatgacataattgattgtaatcacatgtgtcg 21732366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 29388409 - 29388373
Alignment:
Q  33 taagaaaatgacataattgactgtaatcacatgtgtc 69  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  29388409 taagaaaatgacataattgaatgtaatcacatatgtc 29388373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 46981513 - 46981469
Alignment:
Q  25 tagtaatataagaaaatgacataattgactgtaatcacatgtgtc 69  Q
    |||||||||||||||||||||||||  | |||| |||||||||||    
T  46981513 tagtaatataagaaaatgacataataaaatgtattcacatgtgtc 46981469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 53622586 - 53622626
Alignment:
Q  34 aagaaaatgacataattgactgtaatcacatgtgtcggtgt 74  Q
    |||||||||||||| |||| || ||||||||||||||||||    
T  53622586 aagaaaatgacatacttgaatgcaatcacatgtgtcggtgt 53622626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 32843721 - 32843760
Alignment:
Q  25 tagtaatataagaaaatgacataattgactgtaatcacat 64  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  32843721 tagtaatatgagaaaatgacataattgaatgtaatcacat 32843760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 18622426 - 18622472
Alignment:
Q  28 taatataagaaaatgacataattgactgtaatcacatgtgtcggtgt 74  Q
    |||| |||||||||||||||||| | || ||||||||||||||||||    
T  18622426 taatttaagaaaatgacataattaaatgcaatcacatgtgtcggtgt 18622472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 43586046 - 43586000
Alignment:
Q  35 agaaaatgacataattgactgtaatcacatgtgtcggtgtcagacac 81  Q
    |||||||||||||||| | |||||||||| ||||||||||| |||||    
T  43586046 agaaaatgacataattcaatgtaatcacaagtgtcggtgtcggacac 43586000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 22131313 - 22131256
Alignment:
Q  17 gacactaatagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgt 74  Q
    |||||| |||||||| | ||||||||||||  || | |||||||||||||||||||||    
T  22131313 gacactgatagtaatttgagaaaatgacattgttcaatgtaatcacatgtgtcggtgt 22131256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 645342 - 645380
Alignment:
Q  27 gtaatataagaaaatgacataattgactgtaatcacatg 65  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  645342 gtaatttaagaaaatgacataattgaatgtaatcacatg 645380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 10009844 - 10009886
Alignment:
Q  35 agaaaatgacataattgactgtaatcacatgtgtcggtgtcag 77  Q
    |||||||||||||||| | ||||||||||||||||| ||||||    
T  10009844 agaaaatgacataattcaatgtaatcacatgtgtcgttgtcag 10009886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 10010574 - 10010611
Alignment:
Q  37 aaaatgacataattgactgtaatcacatgtgtcggtgt 74  Q
    |||||||||||||| | |||||||||||||||||||||    
T  10010574 aaaatgacataattcattgtaatcacatgtgtcggtgt 10010611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 27239552 - 27239605
Alignment:
Q  24 atagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgtcag 77  Q
    |||||||  |||||||||  ||||||||| ||||||||||||||||||| ||||    
T  27239552 atagtaacgtaagaaaattgcataattgaatgtaatcacatgtgtcggtatcag 27239605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 27253406 - 27253439
Alignment:
Q  48 attgactgtaatcacatgtgtcggtgtcagacac 81  Q
    ||||| ||||||||||||||||||||||||||||    
T  27253406 attgaatgtaatcacatgtgtcggtgtcagacac 27253439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 19167615 - 19167571
Alignment:
Q  37 aaaatgacataattgactgtaatcacatgtgtcggtgtcagacac 81  Q
    ||||||||| |||| | |||||||||| |||||||||||||||||    
T  19167615 aaaatgacacaattcaatgtaatcacaagtgtcggtgtcagacac 19167571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 25652303 - 25652343
Alignment:
Q  34 aagaaaatgacataattgactgtaatcacatgtgtcggtgt 74  Q
    ||||||||||||||||| | |||||||| ||||||||||||    
T  25652303 aagaaaatgacataatttagtgtaatcatatgtgtcggtgt 25652343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 27253305 - 27253349
Alignment:
Q  37 aaaatgacataattgactgtaatcacatgtgtcggtgtcagacac 81  Q
    |||||| ||||||||| |||||||||||||||| ||||| |||||    
T  27253305 aaaatgtcataattgaatgtaatcacatgtgtcagtgtctgacac 27253349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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