View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14402_low_10 (Length: 236)
Name: NF14402_low_10
Description: NF14402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14402_low_10 |
 | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4057957 - 4057741
Alignment:
| Q |
1 |
tagatctaatacattttgatatatgcgagttggatggtaccttgactagaaaccaaaaaagataattttatcacttttattaatgagtgttccgactata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4057957 |
tagatctaatacattttgatatatgcgagttggatggtaccttgactagaaaccaaaaaagataattttatcacttttattaatgagtgttccgactata |
4057858 |
T |
|
| Q |
101 |
tcttatgaaaaataaaagggatgtgtttgatatgttcaaaatcattgtaatagaaatttaaaatcaattcattaagaaaatcaagtgatttcgcattgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
4057857 |
tcttatgaaaaataaaagggatgtgtttgatatgttcaaaatcattgtaatagaaatttaaaatcaattcattaagaaaat-aagtgatttcg---tgat |
4057762 |
T |
|
| Q |
201 |
agaagcacataatgtggttca |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4057761 |
agaagcacataatgtggttca |
4057741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 10112119 - 10112043
Alignment:
| Q |
105 |
atgaaaaataaaagggatgtgtttgatatgttcaaaatcattgtaatagaaatttaaaatcaattcattaagaaaat |
181 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| ||||| |||| | |||| || |||||||||||| ||||||||| |
|
|
| T |
10112119 |
atgaaaaataaaagtgatgcgtttgatatgtttaaaatatttgtcaaagaagttgaaaatcaattcaataagaaaat |
10112043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 13584606 - 13584686
Alignment:
| Q |
105 |
atgaaaaataaaagggatgtgtttgatatgttcaaaatcattgtaatagaaatttaaaatcaattcattaagaaaatcaag |
185 |
Q |
| |
|
|||||||||||||| |||| | | || ||||||||||| |||| | ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
13584606 |
atgaaaaataaaagtgatgcgctcgacatgttcaaaatttttgttaaagaaattgaaaatcaattcaataagaaaatcaag |
13584686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 5244 - 5164
Alignment:
| Q |
105 |
atgaaaaataaaagggatgtgtttgatatgttcaaaatcattgtaatagaaatttaaaatcaattcattaagaaaatcaag |
185 |
Q |
| |
|
||||| || ||||| |||| | |||||||||| ||||| |||| | ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
5244 |
atgaataacaaaagtgatgcgcttgatatgtttaaaatatttgtcaaagaaattgaaaatcaattcaataagaaaatcaag |
5164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 19569802 - 19569722
Alignment:
| Q |
105 |
atgaaaaataaaagggatgtgtttgatatgttcaaaatcattgtaatagaaatttaaaatcaattcattaagaaaatcaag |
185 |
Q |
| |
|
|||||||| ||||| |||| | |||| ||||| ||||| |||| | ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
19569802 |
atgaaaaacaaaagtgatgcgcttgacatgtttaaaatatttgtcaaagaaattgaaaatcaattcaataagaaaatcaag |
19569722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 4405712 - 4405763
Alignment:
| Q |
162 |
aatcaattcattaagaaaatcaagtgatttcgcattgatagaagcacataat |
213 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | |||||| || ||||||| |
|
|
| T |
4405712 |
aatcaattcaataagaaaatcaagtgatttcgtagtgatagtagaacataat |
4405763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 14777091 - 14777032
Alignment:
| Q |
144 |
attgtaatagaaatttaaaatcaattcattaagaaaatcaagtgatttcgcattgataga |
203 |
Q |
| |
|
||||||| |||||| |||||||||| | ||||||||||||||||||||| | ||||||| |
|
|
| T |
14777091 |
attgtaactgaaattgaaaatcaattgaataagaaaatcaagtgatttcgtaatgataga |
14777032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 48434394 - 48434433
Alignment:
| Q |
153 |
gaaatttaaaatcaattcattaagaaaatcaagtgatttc |
192 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
48434394 |
gaaattgaaaatcaattcaataagaaaatcaagtgatttc |
48434433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University