View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14402_low_3 (Length: 431)
Name: NF14402_low_3
Description: NF14402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14402_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Original strand, 24610322 - 24610720
Alignment:
| Q |
19 |
aaacaagaacgaagaaacttgatatatgtggaaatttaatgcaaagttaatattactatatatttaaatggatgtgttacatgtgtgtataaaataataa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24610322 |
aaacaagaacgaagaaacttgatatatgtggaaatttaatgcaaagttaatattactatatatttaaaaggatgtgttacatgtgtgtataaaataataa |
24610421 |
T |
|
| Q |
119 |
tggacccaatgaacgtggtcaaactcaaaatgagaacagaagacatgaactgagataacatgcgttgattatataacttgatagtggnnnnnnnncaagg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24610422 |
tggacccaatgaacgtggtcaaactcaaaatgagaacagaagacatgaactgagataacatgcgttgattatataacttgatagtggaaaaaaa-caagg |
24610520 |
T |
|
| Q |
219 |
ttattgaagagaaagtaagtgggaaaagatgacccacatgtaaacactatgtaaattatgagaatccttttactagaagaaagaacctttctctctcaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24610521 |
ttattgaagagaaagtaagtgggaaa-gatgacccacatgtaaacactatgaaaattatgagaatcctcttactagaagaaagaacctttctctctcaaa |
24610619 |
T |
|
| Q |
319 |
gaagcaggttgttcttgtaaacaagtttagaaaaacttgtcaagatatagcagcaccttttaaggcgtgtagtgagggctaagcaattttattcaccttt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24610620 |
gaagcaggttgttcttgtaaacaagtttagaaaaacttgtcaagatataccagcaccttttaaggcgtgtagtgagggctaagcaattttattcaccttt |
24610719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University