View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14402_low_4 (Length: 421)
Name: NF14402_low_4
Description: NF14402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14402_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 1960533 - 1960129
Alignment:
| Q |
1 |
tatctgctatcggtgtcaattgtatgaaaatatcatcacacttttgcgaaaattgttcataactaaaccatagtcttttccactatccctgtttattgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1960533 |
tatctgctatcggtgtcaattgtatgaaaatatcatcacacttttgcgaaaattgttcataactaaaccatagtcttttccactatccctgtttattgta |
1960434 |
T |
|
| Q |
101 |
tggaaatcatcatacttttctttatgttgttagtaatgtaaaaatatcagaaaacatgaaaacagtgatttattatatgcaatggaaacaagatgaacag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1960433 |
tggaaatcatcatacttttctttatgttgttagtaatgtaaaaatatcagaaaacatgaaaacagtgatttgttatatgcaatggaaacaagatgaacag |
1960334 |
T |
|
| Q |
201 |
acagacaaatacataagttatcaaataaagttaagaataatatcaaaccaacctgatatttcttaatagcttgttgttcgtcctcaatcatctttgattc |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||| |
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| T |
1960333 |
acagacaaatacataagttatcaaataaagttaagaataatatcaaaccaacctga-------taata--ttctt-atcgtcctcaatcatctttgattc |
1960244 |
T |
|
| Q |
301 |
ctgctcaagcctccgagcaatgtaatccttcatcacagaaaatgtgaggcaaggattgtttgacagagtttgaaggagaatgatgggggaaaaaagatta |
400 |
Q |
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| T |
1960243 |
ctgctcaagcttccgagcaatgtaatcctttatcacagaaaatgtgaggcaaggattgtttgacagagtttgaaggagaatgatgggggaaaaaagatta |
1960144 |
T |
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| Q |
401 |
tccctctcaatgcaa |
415 |
Q |
| |
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| T |
1960143 |
tccctctcaatgcaa |
1960129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 248 - 412
Target Start/End: Complemental strand, 5897001 - 5896837
Alignment:
| Q |
248 |
ccaacctgatatttcttaatagcttgttgttcgtcctcaatcatctttgattcctgctcaagcctccgagcaatgtaatccttcatcacagaaaatgtga |
347 |
Q |
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|||||||||||||||| |||||||||| | || |||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| |||| ||||| |
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| T |
5897001 |
ccaacctgatatttctcaatagcttgtcggtcctcctcaatcacctttgattcctgctcaagcttccgagcaatgtaatccttgatcactgaaagtgtga |
5896902 |
T |
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| Q |
348 |
ggcaaggattgtttgacagagtttgaaggagaatgatgggggaaaaaagattatccctctcaatg |
412 |
Q |
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||||||| || ||||||||||||||||||| ||| ||||||| |||| ||||||||| |||||| |
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| T |
5896901 |
ggcaagggttttttgacagagtttgaaggacaattatggggggtaaaatattatccctttcaatg |
5896837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 5897205 - 5897143
Alignment:
| Q |
56 |
ttcataactaaaccatagtcttttccactatccctgtttattgtatggaaatcatcatacttt |
118 |
Q |
| |
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|||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |||| |
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| T |
5897205 |
ttcataactaaaccatagtcttatccactatcggtgtctattgtatggaaatcatcatgcttt |
5897143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 5897063 - 5897030
Alignment:
| Q |
203 |
agacaaatacataagttatcaaataaagttaaga |
236 |
Q |
| |
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||||||||||||||| |||||||||||||||||| |
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|
| T |
5897063 |
agacaaatacataagctatcaaataaagttaaga |
5897030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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