View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14402_low_5 (Length: 396)

Name: NF14402_low_5
Description: NF14402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14402_low_5
NF14402_low_5
[»] chr1 (4 HSPs)
chr1 (16-390)||(6886420-6886794)
chr1 (180-256)||(23802596-23802672)
chr1 (186-250)||(4524587-4524651)
chr1 (177-241)||(5346048-5346112)
[»] chr2 (7 HSPs)
chr2 (180-256)||(16389467-16389543)
chr2 (179-238)||(14433830-14433889)
chr2 (194-247)||(1001390-1001443)
chr2 (194-246)||(8686901-8686953)
chr2 (198-245)||(11814065-11814112)
chr2 (198-238)||(32484074-32484114)
chr2 (183-256)||(8083807-8083880)
[»] chr5 (2 HSPs)
chr5 (180-256)||(21144683-21144759)
chr5 (180-233)||(7471455-7471508)
[»] chr4 (3 HSPs)
chr4 (180-247)||(12141777-12141844)
chr4 (180-239)||(43698765-43698822)
chr4 (181-241)||(45036774-45036834)
[»] chr8 (3 HSPs)
chr8 (180-250)||(34678418-34678488)
chr8 (194-250)||(23431731-23431787)
chr8 (180-250)||(38753436-38753506)
[»] chr3 (2 HSPs)
chr3 (198-239)||(47190200-47190241)
chr3 (180-238)||(26609798-26609856)
[»] chr7 (2 HSPs)
chr7 (194-250)||(31311985-31312041)
chr7 (215-254)||(14718300-14718339)
[»] chr6 (2 HSPs)
chr6 (182-246)||(22719342-22719406)
chr6 (184-241)||(22712213-22712270)


Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 16 - 390
Target Start/End: Original strand, 6886420 - 6886794
Alignment:
Q  16 atgcaatttttaaaatccaaatggtgatagtttattatcctaattaaagctatactgttccaatatgaattttataaaacttaacctatacattagagtc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6886420 atgcaatttttaaaatccaaatggtgatagtttattatcctaattaaagctatactgttccaatatgaattttataaaacttaacctatacattagagtc 6886519  T
Q  116 tattaaatcaatgtcctcttaaagctataaccaagcacatgacgaaatactttgacagttaacttgtctcccgagatatcacttggttgaaagtttctct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||    
T  6886520 tattaaatcaatgtcctcttaaagctataaccaagcacatgacgaaatactttaacaattaacctgtctcccgaggtatcacttggttgaaagtttctct 6886619  T
Q  216 cttcaacctcgagaaacttggttcgaaacccgacaaccagatacttgaacagttaagcttaattaaacaatgtaaagaaaatggctcgtattcataaatc 315  Q
    |||||||||||||||||| |||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6886620 cttcaacctcgagaaactcggtttgaaacccgacagccagatactttaacagttaagcttaattaaacaatgtaaagaaaatggctcgtattcataaatc 6886719  T
Q  316 aaaatgcaagaaatataaacatgaacttaccaaaaacattgatcccaagatgattatacacaggggagaaaaaac 390  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6886720 aaaatgcaagaaatatagacatgaacttaccaaaaacattgatcccaagatgattatacacaggggagaaaaaac 6886794  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 23802672 - 23802596
Alignment:
Q  180 tgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccgacaaccaga 256  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| || |||||    
T  23802672 tgtctcccgagaagtcacttggttgagagtttctctcttcaacctcgagaaactcggttcgagacccggcacccaga 23802596  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 4524587 - 4524651
Alignment:
Q  186 ccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccgaca 250  Q
    |||||| |||| |||||||| ||||||||||||||||||  ||||||| ||||||||||||||||    
T  4524587 ccgagaaatcatttggttgagagtttctctcttcaaccttaagaaactcggttcgaaacccgaca 4524651  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 5346112 - 5346048
Alignment:
Q  177 acttgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcga 241  Q
    |||||||||||||||  |||||||||||| |||||||||||||||| | ||| |||| |||||||    
T  5346112 acttgtctcccgagaagtcacttggttgagagtttctctcttcaactttgaggaactcggttcga 5346048  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 16389467 - 16389543
Alignment:
Q  180 tgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccgacaaccaga 256  Q
    ||||||||||||  |||||||||||| ||||||||||||||||| ||||||||| |||| || ||||| ||||||||    
T  16389467 tgtctcccgagaagtcacttggttgatagtttctctcttcaaccccgagaaactcggtttgagacccggcaaccaga 16389543  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 14433830 - 14433889
Alignment:
Q  179 ttgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggtt 238  Q
    |||||||| ||||  |||||||||||| ||||||||||||||||||||||||||| ||||    
T  14433830 ttgtctcctgagaagtcacttggttgagagtttctctcttcaacctcgagaaactcggtt 14433889  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 1001390 - 1001443
Alignment:
Q  194 tcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccg 247  Q
    |||||||||||| | ||||||||||||||||||||||||| ||||||| |||||    
T  1001390 tcacttggttgagaatttctctcttcaacctcgagaaactcggttcgagacccg 1001443  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 8686953 - 8686901
Alignment:
Q  194 tcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaaccc 246  Q
    |||||||||||| |||||||||||||| |||||||||||| ||||||| ||||    
T  8686953 tcacttggttgagagtttctctcttcatcctcgagaaactcggttcgagaccc 8686901  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 11814112 - 11814065
Alignment:
Q  198 ttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacc 245  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||||    
T  11814112 ttggttgagagtttctctcttcaacctcgagaaactcagttcgaaacc 11814065  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 32484114 - 32484074
Alignment:
Q  198 ttggttgaaagtttctctcttcaacctcgagaaacttggtt 238  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  32484114 ttggttgagagtttctctcttcaacctcgagaaactcggtt 32484074  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 8083880 - 8083807
Alignment:
Q  183 ctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccgacaaccaga 256  Q
    |||||||||  |||| | ||||| |||||||||||| ||||| |||||||| |||| || ||||||||| ||||    
T  8083880 ctcccgagaagtcacgtagttgagagtttctctctttaaccttgagaaactcggtttgagacccgacaatcaga 8083807  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 21144683 - 21144759
Alignment:
Q  180 tgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccgacaaccaga 256  Q
    |||||||||||| ||||||| ||||| |||||||||||||||||   ||||||| ||||||| |||||||| |||||    
T  21144683 tgtctcccgagaaatcactttgttgagagtttctctcttcaaccgacagaaactcggttcgatacccgacacccaga 21144759  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 7471455 - 7471508
Alignment:
Q  180 tgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaact 233  Q
    |||||||| |||  |||||||||||| ||||||| |||||||||||||||||||    
T  7471455 tgtctcccaagaggtcacttggttgagagtttctttcttcaacctcgagaaact 7471508  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 12141844 - 12141777
Alignment:
Q  180 tgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccg 247  Q
    ||||||||||||  | |||||||||| ||| ||||||||||||||||||||||| |||| || |||||    
T  12141844 tgtctcccgagaagttacttggttgagagtatctctcttcaacctcgagaaactcggtttgagacccg 12141777  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 43698765 - 43698822
Alignment:
Q  180 tgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttc 239  Q
    ||||||||||||  |||||||||||| |  |||||||||||||||| |||||||||||||    
T  43698765 tgtctcccgagaagtcacttggttgaga--ttctctcttcaacctcaagaaacttggttc 43698822  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 45036834 - 45036774
Alignment:
Q  181 gtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcga 241  Q
    |||||||||||  |||| ||||||| |||||||||||||||||| | |||||| |||||||    
T  45036834 gtctcccgagaagtcacatggttgagagtttctctcttcaaccttgtgaaactcggttcga 45036774  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 34678488 - 34678418
Alignment:
Q  180 tgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccgaca 250  Q
    |||||||||| | ||||||| ||||| |||||||||||||||| | ||| ||||||||| || ||||||||    
T  34678488 tgtctcccgaaaaatcacttagttgagagtttctctcttcaactttgaggaacttggttggagacccgaca 34678418  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 23431731 - 23431787
Alignment:
Q  194 tcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccgaca 250  Q
    |||||| |||||||||||||||||||||| || ||||||| |||| || ||||||||    
T  23431731 tcacttagttgaaagtttctctcttcaacttctagaaactcggtttgagacccgaca 23431787  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 38753506 - 38753436
Alignment:
Q  180 tgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccgaca 250  Q
    ||||||| |||| || |||||||||| ||| |||||||||||||| |||| ||| |||| || ||||||||    
T  38753506 tgtctcctgagagattacttggttgagagtatctctcttcaaccttgagatactcggttagagacccgaca 38753436  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 47190200 - 47190241
Alignment:
Q  198 ttggttgaaagtttctctcttcaacctcgagaaacttggttc 239  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  47190200 ttggttgagagtttctctcttcaacctcgagaaactcggttc 47190241  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 26609798 - 26609856
Alignment:
Q  180 tgtctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggtt 238  Q
    ||||||||||||  ||||| |||||| ||||||||||||||| || |||||||| ||||    
T  26609798 tgtctcccgagaagtcactaggttgagagtttctctcttcaatcttgagaaactcggtt 26609856  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 31311985 - 31312041
Alignment:
Q  194 tcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaacccgaca 250  Q
    |||| ||||||| ||||||||||||||||||||||| ||| |||| || ||||||||    
T  31311985 tcacatggttgagagtttctctcttcaacctcgagagactcggtttgagacccgaca 31312041  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 14718300 - 14718339
Alignment:
Q  215 tcttcaacctcgagaaacttggttcgaaacccgacaacca 254  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  14718300 tcttcaacctcgagaaacttgattcgagacccgacaacca 14718339  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 22719342 - 22719406
Alignment:
Q  182 tctcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcgaaaccc 246  Q
    ||||||||||  |||||||||||| ||||||||| ||||||||  ||||| ||||||||| ||||    
T  22719342 tctcccgagaagtcacttggttgagagtttctcttttcaacctgaagaaagttggttcgagaccc 22719406  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 22712270 - 22712213
Alignment:
Q  184 tcccgagatatcacttggttgaaagtttctctcttcaacctcgagaaacttggttcga 241  Q
    ||||||||  ||| |||||| | ||| ||||||||||| |||||||||||||||||||    
T  22712270 tcccgagaagtcatttggttcagagtatctctcttcaaactcgagaaacttggttcga 22712213  T

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