View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14402_low_7 (Length: 246)
Name: NF14402_low_7
Description: NF14402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14402_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 28839664 - 28839839
Alignment:
| Q |
55 |
agattgattttacgaagagttcttatatagaagcctcacgctacctttccaaccatattcattcaaatactatatatgtttgtataacataattgattat |
154 |
Q |
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| T |
28839664 |
agattgattttacgaagagttcttatatagaagcctcacgctacctttccaaccatattcattcaaatactatatatgtttgtataacataattgattat |
28839763 |
T |
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| Q |
155 |
ggtgacatgttctgaacggagtacacaaactatggcttcatttttccaaggtcgatactatatgtataactaacac |
230 |
Q |
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| T |
28839764 |
ggtgacatgttctgaacggagtacacaaactatggcttcatttttccaaggtcgatactatatgtataactaacac |
28839839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 22728171 - 22728329
Alignment:
| Q |
57 |
attgattttacgaagagttcttatatagaagcctcacgctacctttccaaccatattcattcaaatactatatatgtttgtataacataattgattatgg |
156 |
Q |
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||||||||| | ||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
22728171 |
attgattttgcaaagagttcttata--gaagcctcacgctaccttcccaacaatattcattcaaatactatatatgtttgtatagcattattgattatgg |
22728268 |
T |
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| Q |
157 |
tgacatgttctgaacggagtacacaaactatggcttcatttttccaaggtcgatactatat |
217 |
Q |
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| T |
22728269 |
tgacatgttatgaacggagtagacaaactatggcttcatttttccaaggtcgatactatat |
22728329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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