View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14402_low_8 (Length: 245)

Name: NF14402_low_8
Description: NF14402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14402_low_8
NF14402_low_8
[»] chr8 (28 HSPs)
chr8 (14-244)||(6311210-6311443)
chr8 (14-244)||(7289865-7290099)
chr8 (14-244)||(36979291-36979524)
chr8 (18-244)||(33037761-33037989)
chr8 (18-244)||(4760029-4760259)
chr8 (14-244)||(30655555-30655793)
chr8 (14-174)||(25328218-25328379)
chr8 (14-242)||(18853117-18853349)
chr8 (14-242)||(18870511-18870743)
chr8 (18-233)||(10689097-10689315)
chr8 (40-174)||(39784789-39784924)
chr8 (77-192)||(26287866-26287985)
chr8 (77-192)||(26301123-26301242)
chr8 (77-192)||(26313117-26313236)
chr8 (35-217)||(10684224-10684410)
chr8 (64-195)||(1261954-1262089)
chr8 (40-230)||(35745318-35745511)
chr8 (64-192)||(31071229-31071362)
chr8 (74-157)||(26403240-26403327)
chr8 (76-157)||(4456028-4456113)
chr8 (76-191)||(7412305-7412426)
chr8 (74-157)||(23799587-23799674)
chr8 (76-157)||(19175766-19175851)
chr8 (77-157)||(4696609-4696693)
chr8 (74-154)||(6127224-6127308)
chr8 (96-155)||(9765852-9765914)
chr8 (77-157)||(19752407-19752491)
chr8 (74-157)||(5702493-5702580)
[»] chr5 (34 HSPs)
chr5 (14-244)||(1457101-1457334)
chr5 (14-233)||(31180138-31180360)
chr5 (14-244)||(43592191-43592425)
chr5 (14-244)||(27449726-27449960)
chr5 (14-244)||(27444882-27445116)
chr5 (14-244)||(43598636-43598870)
chr5 (14-244)||(43604128-43604362)
chr5 (14-244)||(43609620-43609854)
chr5 (14-244)||(15044599-15044831)
chr5 (14-244)||(30631319-30631553)
chr5 (40-236)||(37556588-37556788)
chr5 (40-236)||(37561410-37561610)
chr5 (14-244)||(28807514-28807748)
chr5 (64-195)||(38192135-38192270)
chr5 (64-195)||(38219360-38219495)
chr5 (35-223)||(31396953-31397144)
chr5 (64-195)||(35387624-35387759)
chr5 (35-223)||(31401810-31402001)
chr5 (74-230)||(2785302-2785461)
chr5 (64-195)||(24135809-24135945)
chr5 (40-230)||(33791243-33791436)
chr5 (40-167)||(33768169-33768299)
chr5 (76-157)||(9353344-9353429)
chr5 (76-157)||(36932362-36932447)
chr5 (74-157)||(10281751-10281838)
chr5 (76-157)||(15464532-15464617)
chr5 (74-157)||(19588746-19588833)
chr5 (74-156)||(11916982-11917068)
chr5 (76-157)||(14520230-14520315)
chr5 (74-157)||(3880299-3880386)
chr5 (74-157)||(17003970-17004057)
chr5 (76-154)||(12084187-12084269)
chr5 (77-157)||(28832259-28832343)
chr5 (77-157)||(42127423-42127507)
[»] scaffold0355 (2 HSPs)
scaffold0355 (14-244)||(9583-9812)
scaffold0355 (183-244)||(1-59)
[»] chr4 (29 HSPs)
chr4 (14-244)||(51520369-51520603)
chr4 (14-240)||(3813940-3814168)
chr4 (40-244)||(56146677-56146884)
chr4 (14-244)||(9224346-9224579)
chr4 (14-244)||(24741854-24742087)
chr4 (14-244)||(9229133-9229366)
chr4 (64-241)||(29760558-29760738)
chr4 (14-174)||(45357236-45357397)
chr4 (40-244)||(18855638-18855845)
chr4 (14-174)||(45347756-45347918)
chr4 (14-157)||(5732666-5732809)
chr4 (77-192)||(28468542-28468660)
chr4 (64-191)||(31985634-31985764)
chr4 (74-157)||(10047379-10047466)
chr4 (74-157)||(16623303-16623390)
chr4 (74-157)||(39245994-39246081)
chr4 (76-157)||(5396683-5396768)
chr4 (76-157)||(36315241-36315326)
chr4 (76-157)||(36329450-36329535)
chr4 (74-157)||(38152449-38152536)
chr4 (74-152)||(6743425-6743507)
chr4 (75-156)||(5143260-5143345)
chr4 (77-157)||(5269204-5269288)
chr4 (74-157)||(3796529-3796616)
chr4 (75-156)||(5147678-5147763)
chr4 (76-156)||(3777550-3777634)
chr4 (74-153)||(16630690-16630773)
chr4 (74-157)||(24333809-24333896)
chr4 (75-157)||(54867184-54867269)
[»] chr3 (46 HSPs)
chr3 (14-244)||(7167157-7167391)
chr3 (14-244)||(28503814-28504039)
chr3 (14-244)||(22173134-22173367)
chr3 (64-244)||(2671586-2671769)
chr3 (18-242)||(8739017-8739245)
chr3 (18-242)||(9091255-9091483)
chr3 (64-195)||(40372795-40372929)
chr3 (64-195)||(8477324-8477459)
chr3 (14-157)||(18656436-18656579)
chr3 (35-172)||(8512202-8512342)
chr3 (35-172)||(8517082-8517222)
chr3 (14-230)||(2672870-2673090)
chr3 (14-230)||(2677026-2677246)
chr3 (64-192)||(1305914-1306045)
chr3 (14-116)||(28501647-28501750)
chr3 (35-217)||(32475424-32475608)
chr3 (35-217)||(32480282-32480466)
chr3 (64-191)||(26928591-26928721)
chr3 (40-230)||(24968034-24968227)
chr3 (64-191)||(32143287-32143418)
chr3 (77-191)||(27986449-27986567)
chr3 (64-191)||(27452924-27453055)
chr3 (76-157)||(8370488-8370573)
chr3 (76-157)||(27974954-27975039)
chr3 (111-230)||(10207860-10207981)
chr3 (74-157)||(18552883-18552970)
chr3 (74-156)||(36029094-36029180)
chr3 (76-157)||(16264350-16264435)
chr3 (76-157)||(21711223-21711308)
chr3 (74-154)||(1736305-1736389)
chr3 (77-157)||(33386669-33386753)
chr3 (133-192)||(1309819-1309878)
chr3 (74-157)||(3716002-3716089)
chr3 (74-157)||(30709790-30709877)
chr3 (74-157)||(40592782-40592869)
chr3 (74-157)||(48438214-48438301)
chr3 (76-157)||(6794715-6794800)
chr3 (74-157)||(40844652-40844738)
chr3 (77-157)||(1417493-1417577)
chr3 (77-157)||(39039995-39040079)
chr3 (74-157)||(25795781-25795868)
chr3 (74-157)||(26298988-26299075)
chr3 (74-157)||(47923906-47923993)
chr3 (77-157)||(3328359-3328443)
chr3 (77-157)||(37466291-37466375)
chr3 (74-157)||(24695164-24695251)
[»] chr7 (34 HSPs)
chr7 (14-236)||(24024266-24024492)
chr7 (14-244)||(12396824-12397057)
chr7 (14-244)||(12406244-12406477)
chr7 (18-244)||(20357501-20357730)
chr7 (40-244)||(19992224-19992432)
chr7 (14-201)||(31109523-31109713)
chr7 (71-179)||(4866709-4866819)
chr7 (18-195)||(2057927-2058108)
chr7 (65-244)||(21812229-21812412)
chr7 (64-195)||(21639770-21639905)
chr7 (35-217)||(24266162-24266348)
chr7 (14-195)||(1533393-1533579)
chr7 (64-195)||(18408726-18408860)
chr7 (64-195)||(21645968-21646103)
chr7 (64-192)||(18413606-18413736)
chr7 (35-217)||(24261283-24261469)
chr7 (35-217)||(16880012-16880197)
chr7 (35-217)||(16884868-16885053)
chr7 (74-157)||(29159803-29159890)
chr7 (75-156)||(21983285-21983370)
chr7 (74-157)||(46516320-46516407)
chr7 (74-157)||(49091661-49091748)
chr7 (80-157)||(47263678-47263757)
chr7 (74-157)||(55948-56034)
chr7 (75-156)||(21988909-21988992)
chr7 (76-157)||(44848696-44848781)
chr7 (77-157)||(9190021-9190105)
chr7 (77-157)||(20284089-20284173)
chr7 (76-157)||(2479337-2479421)
chr7 (74-157)||(2647706-2647793)
chr7 (74-157)||(33332460-33332547)
chr7 (77-157)||(2580390-2580474)
chr7 (76-157)||(35960816-35960901)
chr7 (77-157)||(9185178-9185262)
[»] chr6 (26 HSPs)
chr6 (14-242)||(22010636-22010867)
chr6 (14-244)||(28184417-28184650)
chr6 (14-244)||(11856884-11857120)
chr6 (14-244)||(14742376-14742608)
chr6 (14-244)||(14737516-14737749)
chr6 (14-236)||(28155510-28155735)
chr6 (40-244)||(6438412-6438619)
chr6 (14-195)||(5674719-5674905)
chr6 (14-230)||(16838671-16838890)
chr6 (14-222)||(33330384-33330596)
chr6 (40-230)||(6005344-6005537)
chr6 (14-222)||(33335881-33336093)
chr6 (76-157)||(5757490-5757575)
chr6 (77-191)||(22708984-22709102)
chr6 (79-157)||(21356036-21356118)
chr6 (76-157)||(31086485-31086570)
chr6 (120-222)||(5343416-5343519)
chr6 (74-157)||(5572251-5572338)
chr6 (75-157)||(4629954-4630040)
chr6 (75-157)||(10077176-10077262)
chr6 (74-157)||(22963700-22963786)
chr6 (74-157)||(23824607-23824693)
chr6 (74-157)||(31979513-31979600)
chr6 (77-157)||(5017482-5017566)
chr6 (96-157)||(31936587-31936651)
chr6 (74-145)||(21801354-21801429)
[»] chr2 (31 HSPs)
chr2 (14-242)||(44312563-44312794)
chr2 (14-244)||(11098877-11099110)
chr2 (18-244)||(14291402-14291631)
chr2 (14-240)||(32246701-32246933)
chr2 (14-179)||(39811928-39812094)
chr2 (64-244)||(9296401-9296584)
chr2 (64-195)||(25398457-25398592)
chr2 (64-192)||(3491716-3491847)
chr2 (64-195)||(25403595-25403730)
chr2 (40-230)||(19344347-19344541)
chr2 (40-230)||(19349205-19349399)
chr2 (77-191)||(40738810-40738926)
chr2 (74-157)||(21629944-21630030)
chr2 (74-157)||(8040060-8040147)
chr2 (74-154)||(13569331-13569415)
chr2 (76-157)||(28259189-28259274)
chr2 (73-157)||(20522220-20522308)
chr2 (74-157)||(10445454-10445541)
chr2 (74-157)||(17865203-17865290)
chr2 (74-157)||(34682344-34682431)
chr2 (74-156)||(34388859-34388945)
chr2 (74-157)||(14699018-14699104)
chr2 (64-119)||(25407663-25407719)
chr2 (74-157)||(31056044-31056131)
chr2 (74-157)||(33528631-33528718)
chr2 (74-156)||(10707262-10707348)
chr2 (74-154)||(8390160-8390244)
chr2 (79-157)||(42039684-42039766)
chr2 (74-157)||(16940219-16940306)
chr2 (74-157)||(17010884-17010971)
chr2 (74-157)||(39482931-39483018)
[»] scaffold0135 (1 HSPs)
scaffold0135 (14-244)||(35001-35234)
[»] chr1 (27 HSPs)
chr1 (14-244)||(41398153-41398381)
chr1 (14-244)||(24787314-24787547)
chr1 (40-244)||(25445055-25445263)
chr1 (14-244)||(41390498-41390726)
chr1 (40-244)||(39445411-39445618)
chr1 (40-244)||(44023840-44024046)
chr1 (40-244)||(1054978-1055185)
chr1 (64-195)||(24202769-24202904)
chr1 (35-174)||(43988424-43988566)
chr1 (64-192)||(19361432-19361564)
chr1 (64-192)||(19380072-19380204)
chr1 (64-192)||(19358843-19358975)
chr1 (74-157)||(47703946-47704033)
chr1 (76-157)||(26644909-26644994)
chr1 (74-157)||(9476261-9476348)
chr1 (74-157)||(19072928-19073015)
chr1 (74-157)||(19120818-19120905)
chr1 (74-157)||(13598398-13598485)
chr1 (74-157)||(16124526-16124613)
chr1 (74-157)||(27104382-27104469)
chr1 (74-157)||(29651811-29651898)
chr1 (76-157)||(3281708-3281793)
chr1 (76-157)||(37069770-37069855)
chr1 (74-157)||(775672-775759)
chr1 (77-157)||(47098837-47098921)
chr1 (76-157)||(13604635-13604720)
chr1 (76-157)||(21536581-21536666)
[»] scaffold0464 (1 HSPs)
scaffold0464 (40-244)||(274-481)
[»] scaffold0188 (2 HSPs)
scaffold0188 (64-195)||(17952-18087)
scaffold0188 (64-195)||(24045-24180)
[»] scaffold0259 (1 HSPs)
scaffold0259 (35-230)||(2211-2409)
[»] scaffold0028 (1 HSPs)
scaffold0028 (35-230)||(148916-149114)
[»] scaffold0197 (2 HSPs)
scaffold0197 (35-217)||(14269-14455)
scaffold0197 (14-230)||(19104-19323)
[»] scaffold0009 (1 HSPs)
scaffold0009 (91-217)||(181980-182110)
[»] scaffold0978 (1 HSPs)
scaffold0978 (125-244)||(300-419)
[»] scaffold0140 (1 HSPs)
scaffold0140 (76-157)||(8431-8516)
[»] scaffold0036 (1 HSPs)
scaffold0036 (76-156)||(85684-85768)
[»] scaffold0006 (3 HSPs)
scaffold0006 (74-157)||(5683-5770)
scaffold0006 (74-157)||(2492-2579)
scaffold0006 (76-157)||(133292-133377)
[»] scaffold0087 (2 HSPs)
scaffold0087 (76-157)||(43973-44058)
scaffold0087 (76-157)||(36844-36929)
[»] scaffold0148 (1 HSPs)
scaffold0148 (74-157)||(10729-10816)
[»] scaffold0098 (1 HSPs)
scaffold0098 (77-157)||(45253-45337)
[»] scaffold0176 (1 HSPs)
scaffold0176 (74-154)||(17266-17350)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 6311443 - 6311210
Alignment:
Q  14 caaagggtagaatctagggtctgtcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctc 113  Q
    |||||||||||||||||||| |||||||||||||||||||  ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6311443 caaagggtagaatctagggtttgtcttgtgtaaagcttgaaggctagagtttcttgtaaccttttgtaacactttctcatattggattggagagctgctc 6311344  T
Q  114 tctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctct 210  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  6311343 tctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgctttgttatctct 6311244  T
Q  211 ttgtgtgcttttgttatacactagtctagggctg 244  Q
    | ||||| ||||| ||||||||||||||||||||    
T  6311243 tagtgtggttttgctatacactagtctagggctg 6311210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 7289865 - 7290099
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    ||||||||||||| |||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7289865 caaagggtagaatatagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 7289963  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttat-gcttgttagct 208  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||| | |||||| ||    
T  7289964 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttccttttatcacttatcttgtttatggtttgttatct 7290063  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||| ||||| ||||||||||||||||||||    
T  7290064 ctttgtgtggttttgctatacactagtctagggctg 7290099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 36979524 - 36979291
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgc 111  Q
    |||||||||||||||||||| ||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  36979524 caaagggtagaatctagggtttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgc 36979426  T
Q  112 tctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagct 208  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| || ||    
T  36979425 tctctcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttggtatct 36979327  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||| ||||| | ||||||||||||||||||    
T  36979326 ctttgtgtggttttgctctacactagtctagggctg 36979291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 33037761 - 33037989
Alignment:
Q  18 gggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctct 116  Q
    |||||||||||||||| ||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  33037761 gggtagaatctagggtttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttctcatattggattggagagctgctctct 33037859  T
Q  117 ccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttg 213  Q
    |||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| ||| || |||||||    
T  33037860 cccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcttttcttgcttatcttgttt-tgctttggtatctctttg 33037958  T
Q  214 tgtgcttttgttatacactagtctagggctg 244  Q
    |||| ||||| | ||||||||||||||||||    
T  33037959 tgtggttttgctctacactagtctagggctg 33037989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 4760029 - 4760259
Alignment:
Q  18 gggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctc 115  Q
    |||||||||||||||  ||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||| ||||||||||||||||||||||||||    
T  4760029 gggtagaatctagggcttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 4760127  T
Q  116 tccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctcttt 212  Q
    ||||  | |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  4760128 tcccccatattaggccatattggctgaactgggtcaacaatcttcttgatgttttgttcttcctttcttgcttatcttgtttatgctttgttatctcttt 4760227  T
Q  213 gtgtgcttttgttatacactagtctagggctg 244  Q
    ||||| ||||| | ||||||||||||||||||    
T  4760228 gtgtggttttgctctacactagtctagggctg 4760259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 30655793 - 30655555
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgc 111  Q
    |||||||||||||||||||| ||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||| ||||||| ||||||||||||||    
T  30655793 caaagggtagaatctagggtttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattagattggagagctgc 30655695  T
Q  112 tctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtg----ttttgttcttcctttcttgcttatcttgtttatgc-ttgtt 204  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| ||||    ||||||||||||||||||||||||||||||||||| |||||    
T  30655694 tctctcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttttttgttcttcctttcttgcttatcttgtttatgctttgtt 30655595  T
Q  205 agctctttgtgtgcttttgttatacactagtctagggctg 244  Q
    | |||| |||||| ||||| | ||||||||||||||||||    
T  30655594 atctctatgtgtggttttgctctacactagtctagggctg 30655555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 25328218 - 25328379
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25328218 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 25328315  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttctt 174  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25328316 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttctt 25328379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 18853117 - 18853349
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacc-ttttgtaacactttc-tcatattggattggagagctg 110  Q
    ||||||||| |||||||||| ||| ||||||||| ||||||  ||||  | |||||| |||| ||||||||||||||| | |||||||||||||||||||    
T  18853117 caaagggtaaaatctagggtttgttcttgtgtaa-gcttgaatgctattgtttcttgtaacccttttgtaacactttcattatattggattggagagctg 18853215  T
Q  111 ctctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagc 207  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| || |    
T  18853216 ctctctcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttggtatc 18853314  T
Q  208 tctttgtgtgcttttgttatacactagtctagggc 242  Q
    |||||||||| ||||| | || || ||||||||||    
T  18853315 tctttgtgtggttttgctctaaacaagtctagggc 18853349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 18870511 - 18870743
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacc-ttttgtaacactttc-tcatattggattggagagctg 110  Q
    |||||||||||||||||||| ||| ||||||||| ||||||  ||||  | |||||| |||| ||||||||||||||| | |||||||||||||||||||    
T  18870511 caaagggtagaatctagggtttgttcttgtgtaa-gcttgaatgctattgtttcttgtaacccttttgtaacactttcattatattggattggagagctg 18870609  T
Q  111 ctctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagc 207  Q
    |||||||||  ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| || |    
T  18870610 ctctctcccccagattaggccatattggatgaactgggtcaacaatcttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttggtatc 18870708  T
Q  208 tctttgtgtgcttttgttatacactagtctagggc 242  Q
    |||||||||| ||||| | || || ||||||||||    
T  18870709 tctttgtgtggttttgctctaaacaagtctagggc 18870743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 10689097 - 10689315
Alignment:
Q  18 gggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctc 115  Q
    |||||||||||||||  ||| ||||||||| ||||||  ||||  | |||||| |||| | |||||||||||| ||||||||||||||||||||||||||    
T  10689097 gggtagaatctagggcttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctctgtaacactttcatcatattggattggagagctgctctc 10689195  T
Q  116 tccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctcttt 212  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| ||| || ||||||    
T  10689196 tcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcctttcttacttatcttgttt-tgctttggtatctcttt 10689294  T
Q  213 gtgtgcttttgttatacacta 233  Q
    ||||| ||||| | |||||||    
T  10689295 gtgtggttttgctctacacta 10689315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 39784789 - 39784924
Alignment:
Q  40 tgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattgg 136  Q
    |||||||||||||||| |||||||  ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||  |||||||||||||||||    
T  39784789 tgtgtaaagcttgataagctagag--tcttgtaaccttttgtaacactt-cacatattggattggagagctgctctctcccccagattaggccatattgg 39784885  T
Q  137 ctgaactgggtcaacaatctt-ctcggtgttttgttctt 174  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  39784886 ctgaactgggtcaacaatcttgctcggtgttttgttctt 39784924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 77 - 192
Target Start/End: Complemental strand, 26287985 - 26287866
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgt-tttgttc 172  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | ||||| |||||||    
T  26287985 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatctttttggtgtgtttgttc 26287886  T
Q  173 ttcctttcttgcttatcttg 192  Q
    ||||||||||||||||||||    
T  26287885 ttcctttcttgcttatcttg 26287866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 77 - 192
Target Start/End: Complemental strand, 26301242 - 26301123
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgt-tttgttc 172  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | ||||| |||||||    
T  26301242 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatctttttggtgtgtttgttc 26301143  T
Q  173 ttcctttcttgcttatcttg 192  Q
    ||||||||||||||||||||    
T  26301142 ttcctttcttgcttatcttg 26301123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 77 - 192
Target Start/End: Complemental strand, 26313236 - 26313117
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgt-tttgttc 172  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | ||||| |||||||    
T  26313236 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatctttttggtgtgtttgttc 26313137  T
Q  173 ttcctttcttgcttatcttg 192  Q
    ||||||||||||||||||||    
T  26313136 ttcctttcttgcttatcttg 26313117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 35 - 217
Target Start/End: Original strand, 10684224 - 10684410
Alignment:
Q  35 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggcca 130  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||||    
T  10684224 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggcca 10684321  T
Q  131 tattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtg 217  Q
     |||||||||||||||||||||||||| || ||||||||||||   ||| ||| | | ||||||||  ||||||||||||||||| |||||    
T  10684322 cattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgtttatcttg--tatgcttgttagctcttagtgtg 10684410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 1261954 - 1262089
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||| |||||||||||||||||||| |     
T  1261954 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggttgaactgggtcaacaatcttttt 1262053  T
Q  161 ggtgt-tttgttcttcctttcttgcttatcttgttt 195  Q
    ||||| ||||||||||||||||  ||||||||||||    
T  1262054 ggtgtgtttgttcttcctttctatcttatcttgttt 1262089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 40 - 230
Target Start/End: Complemental strand, 35745511 - 35745318
Alignment:
Q  40 tgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattg 135  Q
    |||||||||||||| | ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  ||||||||||| ||||    
T  35745511 tgtgtaaagcttgaaaagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggccacattg 35745414  T
Q  136 gctgaactgggtcaacaatctt-ctcggtgttttgttctt---cctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttataca 230  Q
    |||||||||||||||||||||| ||||||| |||||||||   | ||| | | ||||||||  ||||||||||||||||| ||||| ||||| ||||||    
T  35745413 gctgaactgggtcaacaatcttgctcggtg-tttgttcttttccttttatcgtttatcttg--tatgcttgttagctcttagtgtggttttgctataca 35745318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 31071229 - 31071362
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatcttct 159  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||| | ||||| ||||||||||||| |    
T  31071229 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactcggtcaacaatctttt 31071328  T
Q  160 cggtgt-tttgttcttcctttcttgcttatcttg 192  Q
     ||||| |||||||||||||||||||||||||||    
T  31071329 tggtgtgtttgttcttcctttcttgcttatcttg 31071362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 26403240 - 26403327
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  26403240 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 26403327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 4456113 - 4456028
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||||||||||||||||||  |||||||||||||||||||| | |||| |||||| |||||||    
T  4456113 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggaccgaaccgggtcagcaatctt 4456028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 7412426 - 7412305
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatcttctcggtgt-tttgt 170  Q
    |||||||||||||| ||||| |||||||||||||||||||||  |||| |||||| |||||||| | |||||||||||||||| |||  ||||| |||||    
T  7412426 tttgtaacactttcatcatagtggattggagagctgctctctcccccatattaggtcatattggaccgaactgggtcaacaattttcatggtgtgtttgt 7412327  T
Q  171 tcttcctttc-ttgcttatctt 191  Q
    || | ||||| |||||||||||    
T  7412326 tccttctttcattgcttatctt 7412305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 23799587 - 23799674
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctc--ccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||  ||| |||||| |||||||| | |||||||||||||||||||    
T  23799587 cttttgtaacactttcatcatagtggattggagggctgctctctcctccaaattaggtcatattggaccgaactgggtcaacaatctt 23799674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 19175766 - 19175851
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||||||||| ||||||||  ||||||||||| |||||||| | ||||| |||||||||||||    
T  19175766 tttgtaacactttcatcatagtggattggagagttgctctctcccccagattaggtcatattggaccgaactaggtcaacaatctt 19175851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 4696609 - 4696693
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattggct-gaactgggtcaacaatctt 157  Q
    ||||||| ||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  4696609 ttgtaactctttcatcatagtggattggagggctgctctctcccccagattaggtcatattggatcgaactgggtcaacaatctt 4696693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 6127308 - 6127224
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaat 154  Q
    |||||||||||||||| ||||| |||||||||||||||||||||  |||| |||||| |||||||| | |||||| |||||||||    
T  6127308 cttttgtaacactttcatcatagtggattggagagctgctctcttccccaaattaggtcatattggaccgaactgagtcaacaat 6127224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 9765852 - 9765914
Alignment:
Q  96 tggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatc 155  Q
    |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||    
T  9765852 tggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatc 9765914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 19752407 - 19752491
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||||| || || ||||||||||||||||||||||||  ||| |||| |||||||| | ||||| |||||||||||||    
T  19752407 ttgtaacactttcatcttagtggattggagagctgctctctcccctagactaggtcatattggaccgaactaggtcaacaatctt 19752491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 5702493 - 5702580
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| |||||  ||||||||| | |||||||||||  | |||||| |||||||| | |||||||||||||||||||    
T  5702493 cttttgtaacactttcatcataggggattggagggatgctctctcccccatattaggtcatattggaccgaactgggtcaacaatctt 5702580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 1457101 - 1457334
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1457101 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 1457199  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctc 209  Q
    |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||    
T  1457200 ctctcccccagattaggccacattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttctttcttatcttgtttatgctttgttatctc 1457299  T
Q  210 tttgtgtgcttttgttatacactagtctagggctg 244  Q
    |||||||| ||||| ||||||||||||||||||||    
T  1457300 tttgtgtggttttgctatacactagtctagggctg 1457334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 31180360 - 31180138
Alignment:
Q  14 caaagggtagaatctagggtctgtcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctc 113  Q
    |||||||||||||||||||| |||||||||||||||||||  ||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  31180360 caaagggtagaatctagggtttgtcttgtgtaaagcttgaaggctagagtttcttgtaaccctttgtaacactttctcatattggattggagagctgctc 31180261  T
Q  114 tct--cccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctct 210  Q
    |||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| |||||| ||||    
T  31180260 tctcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttctttctttctttcttatcttgtttatgctttgttatctct 31180161  T
Q  211 ttgtgtgcttttgttatacacta 233  Q
    ||||||| ||||| |||||||||    
T  31180160 ttgtgtggttttgctatacacta 31180138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 43592425 - 43592191
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43592425 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 43592327  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 208  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||||| |||||| ||    
T  43592326 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatct 43592227  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||| ||||| ||||||||||||||||||||    
T  43592226 ctttgtgtggttttgctatacactagtctagggctg 43592191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 27449960 - 27449726
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27449960 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 27449862  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 208  Q
    |||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||||| |||||| ||    
T  27449861 ctctcccccagattaggctatattggctgaactgggtcaacaatcttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatct 27449762  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||| ||||| ||||||||||||||||||||    
T  27449761 ctttgtgtggttttgctatacactagtctagggctg 27449726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 27445116 - 27444882
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27445116 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 27445018  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 208  Q
    |||||||  ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||||| |||||| ||    
T  27445017 ctctcccccagattaggctatattgcctgaactgggtcaacaatcttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatct 27444918  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||| ||||| ||||||||||||||||||||    
T  27444917 ctttgtgtggttttgctatacactagtctagggctg 27444882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 43598870 - 43598636
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43598870 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 43598772  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 208  Q
    |||||||  ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||| |  |||||||||||||||| |||||| ||    
T  43598771 ctctcccccagattaggccatattggctgaactggaccaacaatcttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatct 43598672  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||| ||||| ||||||||||||||||||||    
T  43598671 ctttgtgtggttttgctatacactagtctagggctg 43598636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 43604362 - 43604128
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43604362 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 43604264  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 208  Q
    |||||||  ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||| |  |||||||||||||||| |||||| ||    
T  43604263 ctctcccccagattaggccatattggctgaactggaccaacaatcttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatct 43604164  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||| ||||| ||||||||||||||||||||    
T  43604163 ctttgtgtggttttgctatacactagtctagggctg 43604128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 43609854 - 43609620
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43609854 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 43609756  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 208  Q
    |||||||  ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||| |  |||||||||||||||| |||||| ||    
T  43609755 ctctcccccagattaggccatattggctgaactggaccaacaatcttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatct 43609656  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||| ||||| ||||||||||||||||||||    
T  43609655 ctttgtgtggttttgctatacactagtctagggctg 43609620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 15044831 - 15044599
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | |||||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15044831 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaagctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 15044734  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 208  Q
    |||||||  | |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||  | ||    
T  15044733 ctctcccccatattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttccttttcttgcttatcttgtttatgctttggaatct 15044634  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    | ||||||| ||||| ||||||||||||||||||||    
T  15044633 c-ttgtgtggttttgctatacactagtctagggctg 15044599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 30631553 - 30631319
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||| ||| ||| | ||||||||||||||  ||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||    
T  30631553 caaagggtagaatctatggtttgttcatgtgtaaagcttgaaggctagagtttcttgtaaccctttgtaacactttctcatattggattggagagctgct 30631454  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctc 209  Q
    |||||||  ||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||| ||     
T  30631453 ctctcccccagattaggccacattggctgaactgagtcaacaatcttcttggtgttttgttcttcctttcttacttatcttgtttatgctttgttatcta 30631354  T
Q  210 tttgtgtgcttttgttatacactagtctagggctg 244  Q
    | | |||| ||||| ||||||||||||||||||||    
T  30631353 tatatgtgattttgctatacactagtctagggctg 30631319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 37556588 - 37556788
Alignment:
Q  40 tgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctct--cccagattaggccatattgg 136  Q
    |||||||||||||||| ||||||  | |||| ||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||| |||||    
T  37556588 tgtgtaaagcttgataagctaga--tacttgtaaccttttgtaacactttcacatattggattggagagctgctctctcccccagattaggccacattgg 37556685  T
Q  137 ctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacacta 233  Q
    ||||||||||||||||||||| |||||||||||||||||  | |||   | ||||||||||||||||||||||||||| ||||| ||||| ||||||| |    
T  37556686 ctgaactgggtcaacaatcttgctcggtgttttgttctttccatttaccgtttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaa 37556785  T
Q  234 gtc 236  Q
    |||    
T  37556786 gtc 37556788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 37561410 - 37561610
Alignment:
Q  40 tgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctct--cccagattaggccatattgg 136  Q
    |||||||||||||||| ||||||  | |||| ||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||| |||||    
T  37561410 tgtgtaaagcttgataagctaga--tacttgtaaccttttgtaacactttcacatattggattggagagctgctctctcccccagattaggccacattgg 37561507  T
Q  137 ctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacacta 233  Q
    ||||||||||||||||||||| |||||||||||||||||  | |||   | ||||||||||||||||||||||||||| ||||| ||||| ||||||| |    
T  37561508 ctgaactgggtcaacaatcttgctcggtgttttgttctttccatttaccgtttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaa 37561607  T
Q  234 gtc 236  Q
    |||    
T  37561608 gtc 37561610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 28807514 - 28807748
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    ||||||||||| |||||||| ||| | |||||||||||||| |||||||  |||||| ||||||||||||||||| | ||||||||||||||||||||||    
T  28807514 caaagggtaga-tctagggtttgttcatgtgtaaagcttgaaagctaga--ttcttgtaaccttttgtaacactt-cacatattggattggagagctgct 28807609  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagc 207  Q
    |||||||  ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||  | |||   | |||||||||||||||||||||||    
T  28807610 ctctcccccagattaggccacattggctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgcttgttagc 28807709  T
Q  208 tctttgtgtg--cttttgttatacactagtctagggctg 244  Q
    |||||| |||   ||||| ||||||||||  ||||||||    
T  28807710 tctttgagtggttttttgctatacactagcttagggctg 28807748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 38192270 - 38192135
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |     
T  38192270 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttttt 38192171  T
Q  161 ggtgt-tttgttcttcctttcttgcttatcttgttt 195  Q
    ||||| ||||||||||||||||||||||||||||||    
T  38192170 ggtgtgtttgttcttcctttcttgcttatcttgttt 38192135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 38219495 - 38219360
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |     
T  38219495 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttttt 38219396  T
Q  161 ggtgt-tttgttcttcctttcttgcttatcttgttt 195  Q
    ||||| ||||||||||||||||||||||||||||||    
T  38219395 ggtgtgtttgttcttcctttcttgcttatcttgttt 38219360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 223
Target Start/End: Original strand, 31396953 - 31397144
Alignment:
Q  35 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggcca 130  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||||    
T  31396953 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggcca 31397050  T
Q  131 tattggctgaactgggtcaacaatctt-ctcggtgt---tttgttcttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttg 223  Q
     |||||||||||||||||||||||||| ||||||||   |||||| ||| ||| | | ||||||||  ||||||||||||||||| ||||| |||||    
T  31397051 cattggctgaactgggtcaacaatcttgctcggtgtttgtttgtt-ttcttttatcgtttatcttg--tatgcttgttagctcttagtgtggttttg 31397144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 35387759 - 35387624
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||| | ||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||| |     
T  35387759 ttcttgtaaccctttgtaacactttcatcatagtagattggagagctgctctctcccccagattaggccatattggctgaattgggtcaacaatcttttt 35387660  T
Q  161 ggtgt-tttgttcttcctttcttgcttatcttgttt 195  Q
    ||||| ||||||||||||||||||||||||| ||||    
T  35387659 ggtgtgtttgttcttcctttcttgcttatctcgttt 35387624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 223
Target Start/End: Original strand, 31401810 - 31402001
Alignment:
Q  35 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctct--cccagattaggcca 130  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||  |||| |||||||||    
T  31401810 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccatattaggcca 31401907  T
Q  131 tattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttg 223  Q
     |||||||||||||||||||||||||| ||||||| |||||||   ||| ||| | | ||||||||  ||||||||||||||||| ||||| |||||    
T  31401908 cattggctgaactgggtcaacaatcttgctcggtg-tttgttcgttttcttttatcgtttatcttg--tatgcttgttagctcttagtgtggttttg 31402001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 2785461 - 2785302
Alignment:
Q  74 cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgt 170  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||| ||||||| |||||    
T  2785461 cttttgtaacacattcacatattggattggagagctgctctctcccccagattaggccacattggctgaactgggtcaacaatcttgctcggtg-tttgt 2785363  T
Q  171 tctt---cctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttataca 230  Q
    ||||   | ||| | | ||||||||  ||||||||||||||||| ||||| ||||| ||||||    
T  2785362 tcttttccttttatcgtttatcttg--tatgcttgttagctcttagtgtggttttgctataca 2785302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 24135945 - 24135809
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| || || || |||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||     
T  24135945 ttcttgtaaccctttgtaacactttcatcttagtgcattggatagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttctt 24135846  T
Q  161 ggtgt-tttgttcttcc-tttcttgcttatcttgttt 195  Q
    ||||| ||||||||||| ||||| |||||||||||||    
T  24135845 ggtgtgtttgttcttccttttctagcttatcttgttt 24135809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 230
Target Start/End: Complemental strand, 33791436 - 33791243
Alignment:
Q  40 tgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattg 135  Q
    |||||||||||||| | ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||| ||||  ||||||||||| ||||    
T  33791436 tgtgtaaagcttgaaaagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctttcccccagattaggccacattg 33791339  T
Q  136 gctgaactgggtcaacaatctt-ctcggtgttttgttctt---cctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttataca 230  Q
    |||||||||||||||||||||| ||||||| |||||||||   | ||| | | ||||||||  |||||||||||||||| | |||| ||||| ||||||    
T  33791338 gctgaactgggtcaacaatcttgctcggtg-tttgttcttttccttttatcgtttatcttg--tatgcttgttagctctatatgtggttttgctataca 33791243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 167
Target Start/End: Complemental strand, 33768299 - 33768169
Alignment:
Q  40 tgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattg 135  Q
    |||||||||||||| | ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||||||||||| |||  ||||||||||| ||||    
T  33768299 tgtgtaaagcttgaaaagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctcccccccagattaggccacattg 33768202  T
Q  136 gctgaactgggtcaacaatctt-ctcggtgttt 167  Q
    |||||||||||||||||||||| ||||||||||    
T  33768201 gctgaactgggtcaacaatcttgctcggtgttt 33768169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 9353344 - 9353429
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  9353344 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 9353429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 36932362 - 36932447
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  36932362 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 36932447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 10281838 - 10281751
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||||||||||||||  ||||||| ||| |||||||| | |||||||||||||||||||    
T  10281838 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagatcaggtcatattggaccgaactgggtcaacaatctt 10281751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 15464617 - 15464532
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||  |||||||| | |||||||||||||||||||    
T  15464617 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattagatcatattggaccgaactgggtcaacaatctt 15464532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 19588833 - 19588746
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||||  |||||||  |||||||| | |||||||||||||||||||    
T  19588833 cttttgtaacactttcatcatagtggattggagggctgctctctccctaagattagttcatattggaccgaactgggtcaacaatctt 19588746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 11916982 - 11917068
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatct 156  Q
    |||||||||||||||| | ||| |||||||||||||||||||||  |||| |||||| |||||||| | ||||||||||||||||||    
T  11916982 cttttgtaacactttcattatagtggattggagagctgctctctcccccatattaggtcatattggaccgaactgggtcaacaatct 11917068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 14520315 - 14520230
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| ||||||| |||||||||||| |||  |||||||| |||||||| | |||||||||||||||||||    
T  14520315 tttgtaacactttcatcatagtggattgaagagctgctctcccccctagattaggtcatattggaccgaactgggtcaacaatctt 14520230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 3880386 - 3880299
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||||||||||||||  | ||||||||| |||||||| | ||||||  |||||||||||    
T  3880386 cttttgtaacactttcatcatagtggattggagagctgctctctgcctcagattaggtcatattggacagaactgaatcaacaatctt 3880299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 17003970 - 17004057
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||| || |||||| ||||| ||||||| |||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  17003970 cttttgaaatactttcatcatagtggattgaagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 17004057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 12084187 - 12084269
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaat 154  Q
    |||||||||||||| ||||| |||||||||||||||||||||  |||| |||||| |||| ||| | ||||||||||||||||    
T  12084187 tttgtaacactttcatcatagtggattggagagctgctctctgccccatattaggtcatagtggaccgaactgggtcaacaat 12084269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 28832343 - 28832259
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||||| || || |||||||||| ||||||||||  ||||||||||| |||||||| | |||| ||||||||||||||    
T  28832343 ttgtaacactttcatcttagtggattggagggctgctctctcccccagattaggtcatattggaccgaaccgggtcaacaatctt 28832259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 42127423 - 42127507
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggct-gaactgggtcaacaatctt 157  Q
    ||||||||||||| || || |||||||| | |||||||||||||  |||||||| |||||| | | |||||||||||||||||||    
T  42127423 ttgtaacactttcatcttagtggattggggggctgctctctcccccagattaggtcatattagatcgaactgggtcaacaatctt 42127507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 9583 - 9812
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    ||||||||||| |||||||| ||| | ||||||||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9583 caaagggtaga-tctagggtttgttcatgtgtaaagcttgaaggctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 9679  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgcttgttagctct 210  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9680 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgcttgttagctc- 9778  T
Q  211 ttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||| ||||| |||| |||||  ||||||||    
T  9779 ttgtgtggttttgctatatactagcttagggctg 9812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 1 - 59
Alignment:
Q  183 gcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctg 244  Q
    |||||||||||||||||||||||||||   ||||| ||||| ||||||||||  ||||||||    
T  1 gcttatcttgtttatgcttgttagctc---gtgtggttttgctatacactagcttagggctg 59  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 51520603 - 51520369
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51520603 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 51520505  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 208  Q
    |||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||||| |||||| ||    
T  51520504 ctctcccccagattaggccatattggcagaactgggtcaacaatcttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatct 51520405  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    |||||| || ||||| ||||||||||||||||||||    
T  51520404 ctttgtatggttttgctatacactagtctagggctg 51520369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 3814168 - 3813940
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    ||||||||||| |||||||| ||| | |||||||||||||| ||||||||  ||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  3814168 caaagggtaga-tctagggtttgttcatgtgtaaagcttgaaagctagag--tcttgtaaccttttgtaacactttcacatattggattggagagctgct 3814072  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttcttcctttcttgcttatcttgtttatgcttgttagctc 209  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3814071 ctctcccccagattaggccatattggctgaactgggtcaacaatcttgcatggtgttttgttcttcctttcttgcttatcttgtttatgcttgttagctc 3813972  T
Q  210 tttgtgt-gcttttgttatacactagtctagg 240  Q
    ||||||| | |||||  |||||||||||||||    
T  3813971 tttgtgtggtttttgcgatacactagtctagg 3813940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 40 - 244
Target Start/End: Original strand, 56146677 - 56146884
Alignment:
Q  40 tgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattggc 137  Q
    ||||||||||||||  ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  56146677 tgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagattaggccatattggc 56146775  T
Q  138 tgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttgttatacactagt 235  Q
    ||||||||  ||||||||||||||||||||||||||||| ||| |  |||||||||||||||| |||||| ||||||||||| ||||| |||||||||||    
T  56146776 tgaactggaccaacaatcttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagt 56146875  T
Q  236 ctagggctg 244  Q
    |||||||||    
T  56146876 ctagggctg 56146884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 9224346 - 9224579
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    ||||||||||| |||||||| ||| | ||||||||||||||  ||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  9224346 caaagggtagagtctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttctaaccttttgtaacactttctcatattggattggagagctgct 9224444  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagct 208  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||| ||||| | || ||    
T  9224445 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttccttttaccgcttatcttgttt-tgctttggtatct 9224543  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||| ||||| ||||||||||||||||||||    
T  9224544 ctttgtgtggttttgctatacactagtctagggctg 9224579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 24742087 - 24741854
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgc 111  Q
    |||||||||||||||||||| ||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  24742087 caaagggtagaatctagggtttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgc 24741989  T
Q  112 tctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagct 208  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| || ||    
T  24741988 tctctcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttggtatct 24741890  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||| ||||| | ||||||||||||||||||    
T  24741889 ctttgtgtggttttgctctacactagtctagggctg 24741854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 9229133 - 9229366
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    ||||||||||| |||||||| ||| | ||||||||||||||  ||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  9229133 caaagggtagagtctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttctaaccttttgtaacactttctcatattggattggagagctgct 9229231  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagct 208  Q
    |||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    ||||||||||||| ||||| | || ||    
T  9229232 ctctcccccagattaggccatattggctgaactgggttaacaatcttctcggtgttttgttcttccttttaccgcttatcttgttt-tgctttggtatct 9229330  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||| ||||| ||||||||||||||||||||    
T  9229331 ctttgtgtggttttgctatacactagtctagggctg 9229366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 64 - 241
Target Start/End: Complemental strand, 29760738 - 29760558
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||     
T  29760738 ttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttctt 29760639  T
Q  161 ggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttgttatacactagtctaggg 241  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||  ||||||||||| ||||| | |||||||||||||||    
T  29760638 ggtgttttgttcttcctttcttgcttatcttgttt-tgctttgttctctctttgtgtggttttgctctacactagtctaggg 29760558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 45357236 - 45357397
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | |||||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45357236 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaagctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 45357333  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttctt 174  Q
    |||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45357334 ctctcccccagattatgccatattggctgaactgggtcaacaatcttctcggtgttttgttctt 45357397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 40 - 244
Target Start/End: Complemental strand, 18855845 - 18855638
Alignment:
Q  40 tgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattgg 136  Q
    |||||||||||||||| |||||||  ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||  |||||||||||||||||    
T  18855845 tgtgtaaagcttgataagctagag--tcttgtaaccttttgtaacactt-cacatattggattggagagctgctctctcccccagattaggccatattgg 18855749  T
Q  137 ctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacacta 233  Q
    ||||||||||||||||||||| |||||||||||||||||  | |||   | ||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  18855748 ctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacacta 18855649  T
Q  234 gtctagggctg 244  Q
    |  ||||||||    
T  18855648 gcttagggctg 18855638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 45347756 - 45347918
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  ||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||    
T  45347756 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagaggt-cttgtaaccttttgtaacactttctcatattggattggagagctgct 45347854  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttctt 174  Q
    |||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45347855 ctctcccccagattaagccatattggctgaactgggtcaacaatcttctcggtgttttgttctt 45347918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 5732809 - 5732666
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    ||||||||||| |||||||| ||| | |||||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5732809 caaagggtaga-tctagggtttgttcatgtgtaaagcttgaaagctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 5732713  T
Q  113 ctct--cccagattaggccatattggctgaactgggtcaacaatctt 157  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||    
T  5732712 ctctcccccagattaggccatattggctgaactgggtcaacaatctt 5732666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 192
Target Start/End: Original strand, 28468542 - 28468660
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctctcc--cagattaggccatattggctgaactgggtcaacaatcttctcggtgt-tttgttc 172  Q
    ||||||||||||| ||||| |||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||    
T  28468542 ttgtaacactttcatcatagtggattggagagctgctctctcctccagattaggtcatattggctgaactgggtcaacaatctt-ttggtgtgtttgttc 28468640  T
Q  173 ttcctttcttgcttatcttg 192  Q
    ||||||||||||||||||||    
T  28468641 ttcctttcttgcttatcttg 28468660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 191
Target Start/End: Original strand, 31985634 - 31985764
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctct-cccagattaggccatattgg-ctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||||||||| |     
T  31985634 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctccccagattaggtcatattggaccgaactgggtcaacaatctt-tt 31985732  T
Q  161 ggtgt-tttgttcttcctttcttgcttatctt 191  Q
    ||||| ||||||||||||||||||||||||||    
T  31985733 ggtgtgtttgttcttcctttcttgcttatctt 31985764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 10047466 - 10047379
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  10047466 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 10047379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 16623303 - 16623390
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctc--ccagattaggccatattg-gctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||  |||||||||| |||||||  | |||||||||||||||||||    
T  16623303 cttttgtaacactttcatcatagtggattggagagctgctctctcctccagattaggtcatattgaaccgaactgggtcaacaatctt 16623390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 39246081 - 39245994
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  39246081 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 39245994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 5396683 - 5396768
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctctc--ccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||| ||||||||| ||||| ||||||||||||||||||||||  |||||||||| |||||||| | |||||||||||||||||||    
T  5396683 tttgcaacactttcatcatagtggattggagagctgctctctcctccagattaggtcatattggaccgaactgggtcaacaatctt 5396768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 36315241 - 36315326
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||| ||||    
T  36315241 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacattctt 36315326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 36329450 - 36329535
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||| ||||    
T  36329450 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacattctt 36329535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 38152449 - 38152536
Alignment:
Q  74 cttttgtaacactttctc-atattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| | ||| |||||||||||||||||||||  ||||||||| | |||||||| | |||||||||||||||||||    
T  38152449 cttttgtaacactttcaccatagtggattggagagctgctctctcccccagattatgtcatattggaccgaactgggtcaacaatctt 38152536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 6743425 - 6743507
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaaca 152  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||||  |||||||| |||||||| | ||||||||||||||    
T  6743425 cttttgtaacactttcatcatagtggattggagggctgctctctcccgtagattaggtcatattggaccgaactgggtcaaca 6743507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 5143345 - 5143260
Alignment:
Q  75 ttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatct 156  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||  ||||||||||| |||||||| | ||||| ||||||||||||    
T  5143345 ttttgtaacactttcatcatagtgggttggagagctgctctctcccccagattaggtcatattggaccgaactaggtcaacaatct 5143260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 5269204 - 5269288
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | ||||| |||||||||||||    
T  5269204 ttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaactaggtcaacaatctt 5269288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 3796529 - 3796616
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||| ||||| |||||||||||  | |||||| |||||||| | |||||||||||||||||||    
T  3796529 cttttgtaacactttcatcatagtggattagagagttgctctctcccccatattaggtcatattggacggaactgggtcaacaatctt 3796616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 5147763 - 5147678
Alignment:
Q  75 ttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatct 156  Q
    ||||||||||||||| ||||| |||| ||||||||||||| |||||  | |||||| |||||||| | ||||||||||||||||||    
T  5147763 ttttgtaacactttcatcataatggactggagagctgctccctcccccaaattaggtcatattggaccgaactgggtcaacaatct 5147678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 3777634 - 3777550
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctctc--ccagattaggccatattgg-ctgaactgggtcaacaatct 156  Q
    |||||||||||||| ||||| |||||||||||||| |||||||  | ||||||||  ||||||| | ||||||||||||||||||    
T  3777634 tttgtaacactttcatcatagtggattggagagctactctctcctctagattaggttatattggaccgaactgggtcaacaatct 3777550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 16630690 - 16630773
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctc--ccagattaggccatattgg-ctgaactgggtcaacaa 153  Q
    |||||||||||||||| ||||| ||||||||||||||| ||||||  |||||||| | |||||||| | ||||| |||||||||    
T  16630690 cttttgtaacactttcatcatagtggattggagagctgttctctcctccagattatgtcatattggaccgaactaggtcaacaa 16630773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 24333896 - 24333809
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||  |||| |||||| |||||||| | |||||| || |||||||||    
T  24333896 cttttgtaacacgttcatcatagtggattggagagctgctctctcccccaaattaggtcatattggaccgaactgagttaacaatctt 24333809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 54867269 - 54867184
Alignment:
Q  75 ttttgtaacactttc-tcatattggattggagagctgctctctccc-agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||| |||| ||||| | ||||| || ||||||||||||| ||| |||| |||||||| | |||||||||||||||||||    
T  54867269 ttttgtaacattttcatcatagttgattgaagggctgctctctccccagactaggtcatattggaccgaactgggtcaacaatctt 54867184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 7167391 - 7167157
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgc 111  Q
    |||||||||||||||||||| ||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  7167391 caaagggtagaatctagggtttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgc 7167293  T
Q  112 tctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagct 208  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  7167292 tctctcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcctttcttgcttatcttgtttatgctttgttatct 7167193  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||| ||||| | ||||||||||||||||||    
T  7167192 ctttgtgtggttttgctctacactagtctagggctg 7167157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 28503814 - 28504039
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| | | ||||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28503814 caaagggtagaatctagggtttattcttgtgtaaagcttgaaggctagagtttcttgtaaccttttgtaacactttctcatattggattggagagctgct 28503913  T
Q  113 ctct--cccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctc 209  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||| |||||| |||    
T  28503914 ctcttccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctt---------tcttgtttatgctttgttatctc 28504004  T
Q  210 tttgtgtgcttttgttatacactagtctagggctg 244  Q
    |||||||| ||||| |||||||||||| |||||||    
T  28504005 tttgtgtggttttgctatacactagtcaagggctg 28504039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 22173134 - 22173367
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22173134 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 22173232  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 208  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||| ||| ||| ||| || ||    
T  22173233 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttccttttaccgcttatcttattt-tgctttggtatct 22173331  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||| ||||| ||||||||||||||||||||    
T  22173332 ctttgtgtggttttgctatacactagtctagggctg 22173367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 64 - 244
Target Start/End: Original strand, 2671586 - 2671769
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||     
T  2671586 ttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttctt 2671685  T
Q  161 ggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||  | |||||||| |||||||||    
T  2671686 ggtgttttgttcttcctttcttgcttatcttgttt-tgctttgttatctctttgtgtggtttttctctacactagactagggctg 2671769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 8739017 - 8739245
Alignment:
Q  18 gggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctc 115  Q
    |||||||||||||||  ||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||| ||||||||||||||||||||||||||    
T  8739017 gggtagaatctagggattgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 8739115  T
Q  116 tccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctcttt 212  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| || ||||||    
T  8739116 tcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttggtatctcttt 8739214  T
Q  213 gtgt-gcttttgttatacactagtctagggc 242  Q
    |||| | ||||||| || || ||||||||||    
T  8739215 gtgtggtttttgttctaaacaagtctagggc 8739245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 9091255 - 9091483
Alignment:
Q  18 gggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctc 115  Q
    |||||||||||||||  ||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||| ||||||||||||||||||||||||||    
T  9091255 gggtagaatctagggattgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 9091353  T
Q  116 tccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctcttt 212  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| || ||||||    
T  9091354 tcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttggtatctcttt 9091452  T
Q  213 gtgt-gcttttgttatacactagtctagggc 242  Q
    |||| | ||||||| || || ||||||||||    
T  9091453 gtgtggtttttgttctaaacaagtctagggc 9091483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 40372795 - 40372929
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||     
T  40372795 ttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttctt 40372894  T
Q  161 ggtgttttgttcttcctttcttgcttatcttgttt 195  Q
    ||||||||||||||||| |||||||||||||||||    
T  40372895 ggtgttttgttcttcctatcttgcttatcttgttt 40372929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 8477459 - 8477324
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||     
T  8477459 ttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttctt 8477360  T
Q  161 ggtgt-tttgttcttcctttcttgcttatcttgttt 195  Q
    ||||| ||||||||| ||||||||||||||||||||    
T  8477359 ggtgtgtttgttctttctttcttgcttatcttgttt 8477324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 18656579 - 18656436
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    ||||||||||| |||||||| ||| | ||||||||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18656579 caaagggtaga-tctagggtttgttcatgtgtaaagcttgaatgctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 18656483  T
Q  113 ctct--cccagattaggccatattggctgaactgggtcaacaatctt 157  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||    
T  18656482 ctctcccccagattaggccatattggctgaactgggtcaacaatctt 18656436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 35 - 172
Target Start/End: Complemental strand, 8512342 - 8512202
Alignment:
Q  35 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggcca 130  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||||    
T  8512342 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggcca 8512245  T
Q  131 tattggctgaactgggtcaacaatctt-ctcggtgttttgttc 172  Q
     |||||||||||||||||||||||||| |||||||||||||||    
T  8512244 cattggctgaactgggtcaacaatcttgctcggtgttttgttc 8512202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 35 - 172
Target Start/End: Complemental strand, 8517222 - 8517082
Alignment:
Q  35 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggcca 130  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||||    
T  8517222 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggcca 8517125  T
Q  131 tattggctgaactgggtcaacaatctt-ctcggtgttttgttc 172  Q
     |||||||||||||||||||||||||| |||||||||||||||    
T  8517124 cattggctgaactgggtcaacaatcttgctcggtgttttgttc 8517082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 2672870 - 2673090
Alignment:
Q  14 caaagggtagaatctagggtct-gtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctg 110  Q
    ||||||||||| |||||||| | ||| |||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||||||    
T  2672870 caaagggtaga-tctagggttttgtcatgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctg 2672966  T
Q  111 ctctctccc--agattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttc--ttcctttc-ttgcttatcttgtttatgcttgtt 204  Q
    |||||||||  ||||||||||| |||||||||||||||||||||||||| || |||| |||||||  ||| |||| | | |||||||| |||||||||||    
T  2672967 ctctctcccccagattaggccacattggctgaactgggtcaacaatcttgcttggtg-tttgttcttttcttttcatggtttatcttg-ttatgcttgtt 2673064  T
Q  205 agctctttgtgtgcttttgttataca 230  Q
    ||||||| ||||| ||||| ||||||    
T  2673065 agctcttagtgtggttttgctataca 2673090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 2677026 - 2677246
Alignment:
Q  14 caaagggtagaatctagggtct-gtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctg 110  Q
    ||||||||||| |||||||| | ||| |||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||||||    
T  2677026 caaagggtaga-tctagggttttgtcatgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctg 2677122  T
Q  111 ctctctccc--agattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttc--ttcctttc-ttgcttatcttgtttatgcttgtt 204  Q
    |||||||||  ||||||||||| |||||||||||||||||||||||||| || |||| |||||||  ||| |||| | | |||||||| |||||||||||    
T  2677123 ctctctcccccagattaggccacattggctgaactgggtcaacaatcttgcttggtg-tttgttcttttcttttcatggtttatcttg-ttatgcttgtt 2677220  T
Q  205 agctctttgtgtgcttttgttataca 230  Q
    ||||||| ||||| ||||| ||||||    
T  2677221 agctcttagtgtggttttgctataca 2677246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 64 - 192
Target Start/End: Complemental strand, 1306045 - 1305914
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| || || ||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||| |     
T  1306045 ttcttgtaaccctttgtaacactttcatcgtagtggattggagagctgctatctcccctagattaggccatattggctgaactgggtcaacaatctt-tt 1305947  T
Q  161 ggtgt-tttgttcttcctttcttgcttatcttg 192  Q
    ||||| |||||||||||||||||||||||||||    
T  1305946 ggtgtgtttgttcttcctttcttgcttatcttg 1305914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 28501647 - 28501750
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| | | ||||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28501647 caaagggtagaatctagggtttattcttgtgtaaagcttgaaggctagagtttcttgtaaccttttgtaacactttctcatattggattggagagctgct 28501746  T
Q  113 ctct 116  Q
    ||||    
T  28501747 ctct 28501750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 217
Target Start/End: Complemental strand, 32475608 - 32475424
Alignment:
Q  35 tgtcttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccat 131  Q
    ||||||||||||||||||||| ||||||  |||||| |||  ||||||| || ||| |||||||||||||||||||||||||||||  |||||||||||     
T  32475608 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactctttgtaa-acattcacatattggattggagagctgctctctcccccagattaggccac 32475512  T
Q  132 attggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtg 217  Q
    |||||||||||||||||||||||||| || ||||||||||||   ||| ||| | | ||||||||  ||||||||||||||||| |||||    
T  32475511 attggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgtttatcttg--tatgcttgttagctcttagtgtg 32475424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 35 - 217
Target Start/End: Complemental strand, 32480466 - 32480282
Alignment:
Q  35 tgtcttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccat 131  Q
    ||||||||||||||||||||| ||||||  |||||| |||  ||||||| || ||| |||||||||||||||||||||||||||||  |||||||||||     
T  32480466 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactctttgtaa-acattcacatattggattggagagctgctctctcccccagattaggccac 32480370  T
Q  132 attggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtg 217  Q
    ||||||||||||||||||||||||||  | ||||||||||||   ||| ||| | | ||||||||  ||||||||||||||||| |||||    
T  32480369 attggctgaactgggtcaacaatcttggttggtgttttgttcgttttcttttatcgtttatcttg--tatgcttgttagctcttagtgtg 32480282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 191
Target Start/End: Original strand, 26928591 - 26928721
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||  |||||||| ||||||||||||||||||||||||||||| |     
T  26928591 ttcttgtaaccctttgtaacactttcatcatagtggattggagagttgctctctcccccagattaggtcatattggctgaactgggtcaacaatctt-tt 26928689  T
Q  161 ggtgt-tttgttcttcctttcttgcttatctt 191  Q
    ||||| ||||||||| |||||| |||||||||    
T  26928690 ggtgtgtttgttctttctttctagcttatctt 26928721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 230
Target Start/End: Complemental strand, 24968227 - 24968034
Alignment:
Q  40 tgtgtaaagcttga-tagctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattg 135  Q
    |||||||||||||| ||||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||||| |||||||||  | |||| |||| ||||    
T  24968227 tgtgtaaagcttgaatagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctactctctccccaaaattaagccacattg 24968130  T
Q  136 gctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttataca 230  Q
    |||||||||||||||||||||| ||||||| |||||||   ||| ||| | | ||||||||  ||||||||||||||||| ||||| ||||| ||||||    
T  24968129 gctgaactgggtcaacaatcttgctcggtg-tttgttcgttttcttttatcgtttatcttg--tatgcttgttagctcttagtgtggttttgctataca 24968034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 191
Target Start/End: Complemental strand, 32143418 - 32143287
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatcttct 159  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||| | ||||| ||||||||||||| |    
T  32143418 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactaggtcaacaatctttt 32143319  T
Q  160 cggtgt-tttgttcttcctttcttgcttatctt 191  Q
     ||||| ||||||||||||||||||||||||||    
T  32143318 -ggtgtgtttgttcttcctttcttgcttatctt 32143287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 191
Target Start/End: Original strand, 27986449 - 27986567
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatcttctcggtgt-tttgtt 171  Q
    ||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | ||||||||||||||||||| | ||||| ||||||    
T  27986449 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt-ttggtgtgtttgtt 27986547  T
Q  172 cttcctttcttgcttatctt 191  Q
    | | ||||||||||||||||    
T  27986548 cattctttcttgcttatctt 27986567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 191
Target Start/End: Complemental strand, 27453055 - 27452924
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatcttct 159  Q
    |||||| |||| |||||||||||||| ||||| |||||||||||||||||||||  ||| ||||||| |||||||| | ||||||| ||||||||||| |    
T  27453055 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccggattaggtcatattggaccgaactggatcaacaatctt-t 27452957  T
Q  160 cggtgt-tttgttcttcctttcttgcttatctt 191  Q
     ||||| ||||||| | ||||||||||||||||    
T  27452956 tggtgtgtttgttccttctttcttgcttatctt 27452924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 8370488 - 8370573
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  8370488 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 8370573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 27974954 - 27975039
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  27974954 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 27975039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 10207981 - 10207860
Alignment:
Q  111 ctctctcccagattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttc--ttcctttc-ttgcttatcttgtttatgcttgttag 206  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||| || |||| |||||||  ||| |||| | | |||||||| |||||||||||||    
T  10207981 ctctcccccagattaggccacattggctgaactgggtcaacaatcttgcttggtg-tttgttcttttcttttcatggtttatcttg-ttatgcttgttag 10207884  T
Q  207 ctctttgtgtgcttttgttataca 230  Q
    ||||| ||||| ||||| ||||||    
T  10207883 ctcttagtgtggttttgctataca 10207860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 18552883 - 18552970
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  18552883 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 18552970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 36029180 - 36029094
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgc--tctctcccagattaggccatattgg-ctgaactgggtcaacaatct 156  Q
    |||||||||||||||| ||||| ||||||||||||||||  |||| ||||||||||| |||||||| | ||||||||||||||||||    
T  36029180 cttttgtaacactttcatcatagtggattggagagctgctttctcccccagattaggtcatattggacagaactgggtcaacaatct 36029094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 16264435 - 16264350
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | ||||| |||||||||||||    
T  16264435 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactaggtcaacaatctt 16264350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 21711308 - 21711223
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||| ||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  21711308 tttgtaacactttcatcatagtggatttgagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 21711223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 1736305 - 1736389
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaat 154  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | ||||||||||||||||    
T  1736305 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaat 1736389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 33386669 - 33386753
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | ||||||| |||||||||||    
T  33386669 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactggatcaacaatctt 33386753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 1309878 - 1309819
Alignment:
Q  133 ttggctgaactgggtcaacaatcttctcggtgt-tttgttcttcctttcttgcttatcttg 192  Q
    ||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||    
T  1309878 ttggctgaactgggtcaacaatctttt-ggtgtgtttgttcttcctttcttgcttatcttg 1309819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 3716002 - 3716089
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctg--ctctctcccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| | |||||||||||||  |||||||| |||||||| |||||||| | |||||||||||||||||||    
T  3716002 cttttgtaacactttcatcatagtagattggagagctgctctctctcctagattaggtcatattggaccgaactgggtcaacaatctt 3716089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 30709790 - 30709877
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||| |||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  30709790 cttttgtaacaatttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 30709877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 40592782 - 40592869
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctcc--cagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| | |||||||||||| ||||||||  ||||||||| |||||||| | |||||||||||||||||||    
T  40592782 cttttgtaacactttcatcatagtcgattggagagcttctctctcccacagattaggtcatattggaccgaactgggtcaacaatctt 40592869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 48438301 - 48438214
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | ||||| |||||| ||||||    
T  48438301 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaactaggtcaataatctt 48438214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 6794715 - 6794800
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||||||||||||||||||  |||| |||||| |||||||| |  ||| ||||||||||||||    
T  6794715 tttgtaacactttcatcatagtggattggagagctgctctctcccccatattaggtcatattggacctaaccgggtcaacaatctt 6794800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 40844738 - 40844652
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct-cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||| ||| |||||||||| ||||||||||| |||||||| | ||||||  |||||||||||    
T  40844738 cttttgtaacactttcatcatagtggatttgagggctgctctctccccagattaggtcatattggaccgaactgaatcaacaatctt 40844652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 1417493 - 1417577
Alignment:
Q  77 ttgtaacactttct-catattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| | || |||||||||| | |||||||||||  |||||||| |||||||| | |||||||||||||||||||    
T  1417493 ttgtaacactttcttcttagtggattggagggatgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 1417577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 39039995 - 39040079
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||||| ||||| |||||||||||| || |||||  ||||||||||| |||||||| | ||||| |||||||||||||    
T  39039995 ttgtaacactttcatcatagtggattggagagttgttctcttccccagattaggtcatattggaccgaactaggtcaacaatctt 39040079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 25795868 - 25795781
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||| ||||||||||| || || | |||||||||||||||||||  ||||||||||| |||||||| | ||||| |||||||||||||    
T  25795868 ctttcgtaacactttcatcttagtagattggagagctgctctctcccccagattaggtcatattggaccgaactaggtcaacaatctt 25795781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 26299075 - 26298988
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| | |||||||| |||||||||||||  |||||| | |||||||  | |||||||||||||||||||    
T  26299075 cttttgtaacactttcatcatagtagattggagggctgctctctcccccagattatgtcatattgaaccgaactgggtcaacaatctt 26298988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 47923906 - 47923993
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggct-gaactgggtcaacaatctt 157  Q
    |||||||| ||||||| ||||| | ||||| || |||||||||||||  |||||||| |||||||| | |||||||||||||||||||    
T  47923906 cttttgtagcactttcatcatagtagattgaagggctgctctctcccctagattaggtcatattggatcgaactgggtcaacaatctt 47923993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 3328359 - 3328443
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggc-tgaactgggtcaacaatctt 157  Q
    ||||||||||||| || || ||||||| || ||||||||||||   |||||||| ||||||||  ||||||||||||||||||||    
T  3328359 ttgtaacactttcatcttagtggattgaagggctgctctctcctctagattaggtcatattggaatgaactgggtcaacaatctt 3328443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 37466375 - 37466291
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||||| || || |||||||||| ||| |||||||||  |||||||| |||||||| | |||||| ||||||||||||    
T  37466375 ttgtaacactttcatcttagtggattggagggctactctctcccccagattaggtcatattggaccgaactgtgtcaacaatctt 37466291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 24695164 - 24695251
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| |||||  ||||| ||| | |||||||||||  |||||||| |||||||| | ||||| |||||||||||||    
T  24695164 cttttgtaacactttcatcatagcggattagagggttgctctctcccgtagattaggtcatattggaccgaactaggtcaacaatctt 24695251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 24024266 - 24024492
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  |||||||  ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  24024266 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag--tcttgtaacattttgtaacactttctcatattggattggagagctgct 24024363  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttct-cggtgtttt-gttcttccttt-cttgcttatcttgtttatgcttgttagc 207  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  24024364 ctctcccccagattaggccatattggctgaactgggtcaacaatcttgttcggtgtttttgttcttccttttcttgcttatcttgtttatgcttgttagc 24024463  T
Q  208 tctttgtgtgcttttgttatacactagtc 236  Q
    |||||||||| ||||| |||| |||||||    
T  24024464 tctttgtgtggttttgctatatactagtc 24024492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 12397057 - 12396824
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||| || |  ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |    
T  12397057 caaagggtagaatctagggtttgttcatgtgtaaagattaaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgtt 12396959  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttctt-cctttcttgcttatcttgtttatgc-ttgttagct 208  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||||||| ||| ||| || ||    
T  12396958 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttccctttaccgcttatcttgttt-tgctttggtatct 12396860  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||| ||||| ||||||||||||||||||||    
T  12396859 ctttgtgtggttttgctatacactagtctagggctg 12396824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 12406477 - 12406244
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| |||||||||||||||||||||||||||||||||||||||  |    
T  12406477 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctatt 12406379  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagct 208  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    ||||||||||||| ||||| | || ||    
T  12406378 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttctttcttttaccgcttatcttgttt-tgctttggtatct 12406280  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||| ||||| ||||||||||||||||||||    
T  12406279 ctttgtgtggttttgctatacactagtctagggctg 12406244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 20357501 - 20357730
Alignment:
Q  18 gggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctct 116  Q
    |||||||||||||||  ||| ||||||||||||||||  ||||  | |||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  20357501 gggtagaatctagggcatgttcttgtgtaaagcttgaaggctattgtttcttgtaaccctttgtaacactttctcatattggattggagagctgctctct 20357600  T
Q  117 --cccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagctcttt 212  Q
      |||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||  ||| |||||| ||||||    
T  20357601 cccccaaattaggccatattggctgaactgggtcaacaatcttcttggtattttgttcttccttttcttgcttatcttgtt--tgctttgttatctcttt 20357698  T
Q  213 gtgtgcttttgttatacactagtctagggctg 244  Q
    ||||| ||||| | ||||||||||||||||||    
T  20357699 gtgtggttttgctctacactagtctagggctg 20357730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 40 - 244
Target Start/End: Complemental strand, 19992432 - 19992224
Alignment:
Q  40 tgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctct--cccagattaggccatattgg 136  Q
    |||||||||||||||| |||||||  ||||| ||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||    
T  19992432 tgtgtaaagcttgataagctagag--tcttgtaaccttttgtaacactttcacatattggattggagagctgctctctcccccagattaggccatattgg 19992335  T
Q  137 ctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacacta 233  Q
    ||||||||||||||||||||| |||||||||||||||||  | |||   | ||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  19992334 ctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacacta 19992235  T
Q  234 gtctagggctg 244  Q
    |  ||||||||    
T  19992234 gcttagggctg 19992224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 31109523 - 31109713
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | |||| |||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31109523 caaagggtagaatctagggtttgttcatgtgcaaagcttgaaggctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 31109620  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttcttcc-tttcttgcttatcttgtttatgctt 201  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||| |||||||||||||||||    
T  31109621 ctctcccctagattaggccatattggctgaactgggtcaacaatcttgttcggtgttttgttcttccttttcttgtttatcttgtttatgctt 31109713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 4866819 - 4866709
Alignment:
Q  71 aaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgtttt 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4866819 aaccttttgtaacactttctcatattggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgtttt 4866720  T
Q  169 gttcttccttt 179  Q
    |||||||||||    
T  4866719 gttcttccttt 4866709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 2058108 - 2057927
Alignment:
Q  18 gggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctc 115  Q
    |||||||||||||||  ||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||| ||||||||||||||||||||||||||    
T  2058108 gggtagaatctagggcttgttcttgtgtaa-gcttgaatgctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 2058010  T
Q  116 tccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgttt 195  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||    
T  2058009 tcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttccttttattgcttatcttgttt 2057927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 65 - 244
Target Start/End: Original strand, 21812229 - 21812412
Alignment:
Q  65 tcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatctt-ctcg 161  Q
    ||||| |||||||||||| |||| | |||||||||||||| ||||||||||||||  ||||||||||| |||||||||||||||||||||||||| ||||    
T  21812229 tcttggaaccttttgtaagactt-cacatattggattggaaagctgctctctcccccagattaggccacattggctgaactgggtcaacaatcttgctcg 21812327  T
Q  162 gtgttttgttc--ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctg 244  Q
    |||||||||||  ||| |||   | ||||||||||||||||||||| ||||||||||| ||||| ||||||||||  ||||||||    
T  21812328 gtgttttgttcttttcttttaccgtttatcttgtttatgcttgttaactctttgtgtggttttgctatacactagcttagggctg 21812412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 21639905 - 21639770
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| | ||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |     
T  21639905 ttcttgtaaccctttgtaacactttcattatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttttt 21639806  T
Q  161 ggtgt-tttgttcttcctttcttgcttatcttgttt 195  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21639805 ggtgtgtttgttcttcctttcttgcttatcttgttt 21639770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 35 - 217
Target Start/End: Original strand, 24266162 - 24266348
Alignment:
Q  35 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggcca 130  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||||    
T  24266162 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggcca 24266259  T
Q  131 tattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtg 217  Q
     |||||||||||||||||||||||||| || ||||||||||||   ||||||| | | ||||||||  ||||||||||||||||| |||||    
T  24266260 cattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcctttatcgtttatcttg--tatgcttgttagctcttagtgtg 24266348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 1533393 - 1533579
Alignment:
Q  14 caaagggtagaatctagggtctgt--cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctg 110  Q
    ||||||||||||||||||   |||  ||||||||| |||||  |||||  | |||||| |||| |||||||||||||| |||||||||||||||||| ||    
T  1533393 caaagggtagaatctaggtcttgtttcttgtgtaa-gcttgcaagctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagatg 1533491  T
Q  111 ctctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgt-tttgttcttcctttcttgcttatcttgttt 195  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||| ||||||    
T  1533492 ctctctcccccagattaggccatattggctgaactgggtcaacaatcttattggtgtgtttgttctttctttcttgcttatattgttt 1533579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 18408860 - 18408726
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |     
T  18408860 ttcttgtaaccctttgtaacactttcatcatactggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatctt-tt 18408762  T
Q  161 ggtgt-tttgttcttcctttcttgcttatcttgttt 195  Q
    ||||| ||||||||| ||||||||||||||||||||    
T  18408761 ggtgtgtttgttctttctttcttgcttatcttgttt 18408726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 21646103 - 21645968
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| ||| |||||||||| ||||| ||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||| |     
T  21646103 ttcttgtaaccctttttaacactttcatcatagtggattggagagctgctctcttccctagattaggccatattggctgaactgggtcaacaatcttttt 21646004  T
Q  161 ggtgt-tttgttcttcctttcttgcttatcttgttt 195  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21646003 ggtgtgtttgttcttcctttcttgcttatcttgttt 21645968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 192
Target Start/End: Complemental strand, 18413736 - 18413606
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc-agattaggccatattggctgaactgggtcaacaatcttctcg 161  Q
    |||||| |||| |||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |    
T  18413736 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctccccagattaggccatattggctgaactgggtcaacaatctt-ttg 18413638  T
Q  162 gtgt-tttgttcttcctttcttgcttatcttg 192  Q
    |||| ||||||||| |||||||||||||||||    
T  18413637 gtgtgtttgttctttctttcttgcttatcttg 18413606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 35 - 217
Target Start/End: Original strand, 24261283 - 24261469
Alignment:
Q  35 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggcca 130  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||||    
T  24261283 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggcca 24261380  T
Q  131 tattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtg 217  Q
     |||||||||||||||||||||||||| || ||||||||||||   ||| ||| | | ||||||||  ||||||||||||||||| |||||    
T  24261381 cattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgtttatcttg--tatgcttgttagctcttagtgtg 24261469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 35 - 217
Target Start/End: Complemental strand, 16880197 - 16880012
Alignment:
Q  35 tgtcttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccat 131  Q
    ||||||||||||||||||||| ||||||  |||||| |||  ||||||| || ||| |||||||||||||||||||||||||||||  |||||||||||     
T  16880197 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactctttgtaaaacattcacatattggattggagagctgctctctcccccagattaggccac 16880100  T
Q  132 attggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtg 217  Q
    |||||||||||||||||||||||||| || ||||||||||||   ||| ||| | | ||||||||  ||||||||||||||||| |||||    
T  16880099 attggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgtttatcttg--tatgcttgttagctcttagtgtg 16880012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 35 - 217
Target Start/End: Complemental strand, 16885053 - 16884868
Alignment:
Q  35 tgtcttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccat 131  Q
    ||||||||||||||||||||| ||||||  |||||| |||  ||||||| || ||| |||||||||||||||||||||||||||||  |||||||||||     
T  16885053 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactctttgtaaaacattcacatattggattggagagctgctctctcccccagattaggccac 16884956  T
Q  132 attggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtg 217  Q
    |||||||||||||||||||||||||| || ||||||||||||   ||| ||| | | ||||||||  ||||||||||||||||| |||||    
T  16884955 attggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgtttatcttg--tatgcttgttagctcttagtgtg 16884868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 29159890 - 29159803
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||| | |||||||||||||||||||    
T  29159890 cttttgtaacactttcatcatagtggattggagagctgctctctcccctagattaggtcatattggaccgaactgggtcaacaatctt 29159803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 21983370 - 21983285
Alignment:
Q  75 ttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatct 156  Q
    ||||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | ||||||||||||||||||    
T  21983370 ttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatct 21983285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 46516320 - 46516407
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||||  |||||||| |||||||| | |||||||||||||||||||    
T  46516320 cttttgtaacactttcatcatagtggattggagggctgctctctcccctagattaggtcatattggaccgaactgggtcaacaatctt 46516407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 49091748 - 49091661
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||  ||||||||||| |||||||| || ||||||||||||||||||    
T  49091748 cttttgtaacactttcatcatagtggattggagagttgctctcttccccagattaggtcatattggactaaactgggtcaacaatctt 49091661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 47263757 - 47263678
Alignment:
Q  80 taacactttc-tcatattggattggagagctgctctctcccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||| ||||| |||||||||||||||||||| |||| |||||| |||||||| | |||||||||||||||||||    
T  47263757 taacactttcatcatagtggattggagagctgctctcccccatattaggtcatattggaccgaactgggtcaacaatctt 47263678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 56034 - 55948
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct-cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||| |||||||||| ||||||||||| |||||||| | |||||||||||| ||||||    
T  56034 cttttgtaacactttcatcatagtggattggagggctgctctctccccagattaggtcatattggaccgaactgggtcaataatctt 55948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 21988992 - 21988909
Alignment:
Q  75 ttttgtaacactttc-tcatattggattggagagctgctctctcccagattaggccatattgg-ctgaactgggtcaacaatct 156  Q
    ||||||||||||||| ||| | |||||||||||| |||||||  |||||||||| |||||||| | ||||||||||||||||||    
T  21988992 ttttgtaacactttcatcaaagtggattggagagttgctctcctccagattaggtcatattggaccgaactgggtcaacaatct 21988909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 44848696 - 44848781
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattg-gctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||| ||||| |||||||  | |||||||||||||||||||    
T  44848696 tttgtaacactttcatcatagtggattggagagctgctctctcccccaggttaggtcatattgaaccgaactgggtcaacaatctt 44848781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 9190021 - 9190105
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||||| || || |||||||||||||||||||||  |||||| |||| |||||||| | |||||||||||||||||||    
T  9190021 ttgtaacactttcatcttagtggattggagagctgctctctcccccagactaggtcatattggaccgaactgggtcaacaatctt 9190105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 20284173 - 20284089
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||||| || || |||||||||| ||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  20284173 ttgtaacactttcatcttagtggattggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 20284089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 2479421 - 2479337
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctctccc-agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||| ||||||||||||| ||| |||||||| |||||||  | |||||||||||||||||||    
T  2479421 tttgtaacactttcatcatagtggatttgagagctgctctccccctagattaggtcatattgaaccgaactgggtcaacaatctt 2479337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 2647706 - 2647793
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatatt-ggctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||  |||||| |||| |||||| ||| ||| |||||||||||||||    
T  2647706 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagaataggtcatattgggccgaattgggtcaacaatctt 2647793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 33332460 - 33332547
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattggct-gaactgggtcaacaatctt 157  Q
    |||||||||||||||| || || |||||||||| ||||||||||  ||||||||||| |||||| | | |||||||||||||||||||    
T  33332460 cttttgtaacactttcatcttagtggattggagggctgctctctcccccagattaggtcatattagatcgaactgggtcaacaatctt 33332547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 2580474 - 2580390
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||||| || || |||||||||||||||||||||  |||||| |||| |||||||| | ||| |||||||||||||||    
T  2580474 ttgtaacactttcatcttagtggattggagagctgctctctcccccagactaggtcatattggaccgaattgggtcaacaatctt 2580390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 35960901 - 35960816
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattg-gctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| ||| |||||| ||||||||||  ||||||||||| |||||||  | ||||| |||||||||||||    
T  35960901 tttgtaacactttcatcatagtggtttggagggctgctctctcccccagattaggtcatattgaaccgaactcggtcaacaatctt 35960816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 9185178 - 9185262
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||||| || || |||||||||||||| ||||||  |||||| ||||  ||||||| | |||||||||||||||||||    
T  9185178 ttgtaacactttcatcttagtggattggagagcttctctctcccccagactaggttatattggaccgaactgggtcaacaatctt 9185262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 22010636 - 22010867
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22010636 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 22010734  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 208  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| ||| ||| || ||    
T  22010735 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttccttttatcgcttatcttgttt-tgctttggtatct 22010833  T
Q  209 ctttgtgtgcttttgttatacactagtctagggc 242  Q
    ||||||||| ||||| |||||||| |||||||||    
T  22010834 ctttgtgtggttttgctatacacttgtctagggc 22010867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 28184650 - 28184417
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  |||||||  | ||| |||||||||||||||||||||||||| |||||||||||||||    
T  28184650 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag--tgttgtaaccttttgtaacactttctcatattagattggagagctgct 28184553  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttct--tgcttatcttgtttatgc-ttgttagc 207  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |   ||||||||||||||||| |||  | |    
T  28184552 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttctttctttttaccgcttatcttgtttatgctttggaatc 28184453  T
Q  208 tctttgtgtgcttttgttatacactagtctagggctg 244  Q
    || ||||||| ||||| ||||||||||||||||||||    
T  28184452 tc-ttgtgtggttttgctatacactagtctagggctg 28184417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 11857120 - 11856884
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11857120 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 11857022  T
Q  113 ctct--cccagattaggccatattggctgaactgggtcaacaatcttctcggtg---ttttgttcttcc-tttcttgcttatcttgtttatgc-ttgtta 205  Q
    ||||  |||| |||||||||||||||||||||||||||||||||||||| ||||   |||||||||||| ||| | |||| |||||||| ||| ||| ||    
T  11857021 ctctcccccatattaggccatattggctgaactgggtcaacaatcttcttggtgtttttttgttcttccttttatcgcttgtcttgttt-tgctttggta 11856923  T
Q  206 gctctttgtgtgcttttgttatacactagtctagggctg 244  Q
     ||||||||||| ||||| ||||||||||||||||||||    
T  11856922 tctctttgtgtggttttgctatacactagtctagggctg 11856884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 14742376 - 14742608
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | | ||||||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14742376 caaagggtagaatctagggtttgttcatatgtaaagcttgaaggctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 14742473  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagct 208  Q
    |||||||  | |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    ||||||||||||| ||||| | || ||    
T  14742474 ctctcccccaaattaggtcatattggctgaactgggtcaacaatcttctcggtgttttgttctttcttttaccgcttatcttgttt-tgctttgatatct 14742572  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||| ||||| ||||||||||||||||||||    
T  14742573 ctttgtgtggttttgctatacactagtctagggctg 14742608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 14737516 - 14737749
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | | ||||||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14737516 caaagggtagaatctagggtttgttcatatgtaaagcttgaaggctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 14737613  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttc-ttcctttcttgcttatcttgtttatgc-ttgttagct 208  Q
    |||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||   ||||||||||||| ||| ||| || ||    
T  14737614 ctctcccccagattaggccatattggctgaactggatcaacaatcttctcggtgttttgttctttcttttaccgcttatcttgttt-tgctttggtatct 14737712  T
Q  209 c-tttgtgtgcttttgttatacactagtctagggctg 244  Q
    | |||||||| ||||| ||||||||||||||||||||    
T  14737713 cttttgtgtggttttgctatacactagtctagggctg 14737749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 28155510 - 28155735
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    ||||||||||| |||||||| ||| | |||||||||||||| ||||| |  |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28155510 caaagggtaga-tctagggtttgttcatgtgtaaagcttgaaagctaaa--ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 28155606  T
Q  113 ctct--cccagattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagc 207  Q
    ||||  |||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||  | |||   | |||||||||||||||||||||||    
T  28155607 ctctcccccagattaggccacattggctgaactgggtcaacaatcttgttcggtgttttgttctttccatttaccgtttatcttgtttatgcttgttagc 28155706  T
Q  208 tctttgtgtgcttttgttatacactagtc 236  Q
    |||| ||||| ||||| ||||||| ||||    
T  28155707 tcttagtgtggttttgctatacacaagtc 28155735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 40 - 244
Target Start/End: Complemental strand, 6438619 - 6438412
Alignment:
Q  40 tgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattgg 136  Q
    |||||||||||||| | |||||||  ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||  |||||||||||||||||    
T  6438619 tgtgtaaagcttgacaagctagag--tcttgtaaccttttgtaacactt-cacatattggattggagagctgctctctcccccagattaggccatattgg 6438523  T
Q  137 ctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacacta 233  Q
    |||||||||| |||||||||| |||||||||||||||||  | |||   | ||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  6438522 ctgaactgggacaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacacta 6438423  T
Q  234 gtctagggctg 244  Q
    |  ||||||||    
T  6438422 gcttagggctg 6438412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 5674719 - 5674905
Alignment:
Q  14 caaagggtagaatctagggtctgt--cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctg 110  Q
    ||||||||||||||||||   |||  ||||||||| |||||  |||||  | |||||| |||| |||||||||||||| |||||||||||||||||||||    
T  5674719 caaagggtagaatctaggtcttgtttcttgtgtaa-gcttgcaagctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctg 5674817  T
Q  111 ctctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgt-tttgttcttcctttcttgcttatcttgttt 195  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||  | ||||| ||||||||| ||||||||||||| ||||||    
T  5674818 ctctctcccccagattaggccatattggctgaactgggtcaacaatctctttggtgtgtttgttctttctttcttgcttatattgttt 5674905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 16838890 - 16838671
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttga-tagctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctg 110  Q
    ||||||||||| |||||||| ||| | |||||||||||||| ||||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||||||    
T  16838890 caaagggtaga-tctagggtttgttcatgtgtaaagcttgaatagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctg 16838794  T
Q  111 ctctct--cccagattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgtt 204  Q
    ||||||  ||||||||| |||| |||||||||||||||||||||||||| ||||||| |||||||   ||| ||| | | ||||||||  ||||||||||    
T  16838793 ctctctcccccagattaagccacattggctgaactgggtcaacaatcttgctcggtg-tttgttcgttttcttttatcgtttatcttg--tatgcttgtt 16838697  T
Q  205 agctctttgtgtgcttttgttataca 230  Q
    ||||||| ||||| ||||| ||||||    
T  16838696 agctcttagtgtggttttgctataca 16838671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 33330384 - 33330596
Alignment:
Q  14 caaagggtagaatctagggtct-gtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctg 110  Q
    ||||||||||| |||||||| | ||| |||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||||||    
T  33330384 caaagggtaga-tctagggttttgtcatgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctg 33330480  T
Q  111 ctctctccc--agattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttc--ttcctttc-ttgcttatcttgtttatgcttgtt 204  Q
    |||||||||  ||||||||||| |||||||||||||||||||||||||| || |||| |||||||  ||| |||| | | |||||||| |||||||||||    
T  33330481 ctctctcccccagattaggccacattggctgaactgggtcaacaatcttgcttggtg-tttgttcttttcttttcatggtttatcttg-ttatgcttgtt 33330578  T
Q  205 agctctttgtgtgctttt 222  Q
    ||||||| ||||| ||||    
T  33330579 agctcttagtgtggtttt 33330596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 40 - 230
Target Start/End: Complemental strand, 6005537 - 6005344
Alignment:
Q  40 tgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattg 135  Q
    |||||||||||||| | ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  ||||||||||| ||||    
T  6005537 tgtgtaaagcttgaaaagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggccacattg 6005440  T
Q  136 gctgaactgggtcaacaatctt-ctcggtgttttgttctt---cctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttataca 230  Q
    |||||||||||||||||||||| ||||||| |||||||||   | ||| | | ||||||||  ||||||||||||||||| ||||| ||||| ||||||    
T  6005439 gctgaactgggtcaacaatcttgctcggtg-tttgttcttttccttttatcgtttatcttg--tatgcttgttagctcttagtgtggttttgctataca 6005344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 33335881 - 33336093
Alignment:
Q  14 caaagggtagaatctagggtct-gtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctg 110  Q
    ||||||||||| |||||||| | ||| |||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||||||    
T  33335881 caaagggtaga-tctagggttttgtcatgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctg 33335977  T
Q  111 ctctct--cccagattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttc--ttcctttc-ttgcttatcttgtttatgcttgtt 204  Q
    ||||||  ||||||||||| || |||||||||||||||||||||||||| || |||| |||||||  ||| |||| | | |||||||| |||||||||||    
T  33335978 ctctctcccccagattaggtcacattggctgaactgggtcaacaatcttgcttggtg-tttgttcttttcttttcatggtttatcttg-ttatgcttgtt 33336075  T
Q  205 agctctttgtgtgctttt 222  Q
    ||||||| ||||| ||||    
T  33336076 agctcttagtgtggtttt 33336093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 5757490 - 5757575
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  5757490 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 5757575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 22709102 - 22708984
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatcttctcggtgt-tttgtt 171  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||  |||||||  |||||||  | ||||| |||||||||| || | ||||| ||||||    
T  22709102 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattagatcatattgaaccgaactaggtcaacaatttttt-ggtgtgtttgtt 22709004  T
Q  172 cttcctttcttgcttatctt 191  Q
    ||||||||||||||||||||    
T  22709003 cttcctttcttgcttatctt 22708984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 21356118 - 21356036
Alignment:
Q  79 gtaacactttc-tcatattggattggagagctgctctctc--ccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||| ||||| ||||||||||||||||||||||  |||||||||| |||||||| | |||||||||||||||||||    
T  21356118 gtaacactttcatcatagtggattggagagctgctctctcctccagattaggtcatattggaccgaactgggtcaacaatctt 21356036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 31086485 - 31086570
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||  |||||||  |||||||| |||||||||||||||||||||    
T  31086485 tttgtaacactttcatcatagtggattggagagttgctctctcccctagattagatcatattggactgaactgggtcaacaatctt 31086570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 5343519 - 5343416
Alignment:
Q  120 agattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtg 215  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||| |||||||   ||||||| | | ||||||||  ||||||||||||||||| |||    
T  5343519 agattaggccacattggctgaactgggtcaacaatcttgctcggtg-tttgttcgttttcctttatcgtttatcttg--tatgcttgttagctcttagtg 5343423  T
Q  216 tgctttt 222  Q
    || ||||    
T  5343422 tggtttt 5343416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 5572251 - 5572338
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||||  |||||||| |||||||| | ||| |||||||||||||||    
T  5572251 cttttgtaacactttcatcatagtggattggagggctgctctctcccctagattaggtcatattggaccgaattgggtcaacaatctt 5572338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 4630040 - 4629954
Alignment:
Q  75 ttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||||||| || || |||||||||||||||||||||  || |||||||| |||||||| |||||||| ||||||||||||    
T  4630040 ttttgtaacactttcatcttagtggattggagagctgctctcttccctagattaggtcatattggactgaactgagtcaacaatctt 4629954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 10077176 - 10077262
Alignment:
Q  75 ttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | ||| |||||||||||||||    
T  10077176 ttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaattgggtcaacaatctt 10077262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 22963786 - 22963700
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct-cccagattaggccatattg-gctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||| |||||||||| |||||||| || |||||||  | |||||||||||||||||||    
T  22963786 cttttgtaacactttcatcatagtggattggagggctgctctctccccagatttggtcatattgcaccgaactgggtcaacaatctt 22963700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 23824607 - 23824693
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct-cccagattaggccatattg-gctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||| |||||||||| |||||||| || |||||||  | |||||||||||||||||||    
T  23824607 cttttgtaacactttcatcatagtggattggagggctgctctctccccagatttggtcatattgcaccgaactgggtcaacaatctt 23824693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 31979600 - 31979513
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||| ||||||||| || || |||||||||| ||||||||||  ||||||||| | |||||||| | |||||||||||||||||||    
T  31979600 cttttgcaacactttcatcttagtggattggagggctgctctctcccccagattatgtcatattggaccgaactgggtcaacaatctt 31979513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 5017482 - 5017566
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||||| ||||| | |||||||| | |||||||||||  |||||||| |||||| | | |||||||||||||||||||    
T  5017482 ttgtaacactttcatcatagtagattggagggttgctctctcccctagattaggtcatatttgaccgaactgggtcaacaatctt 5017566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 31936651 - 31936587
Alignment:
Q  96 tggattggagagctgctc--tctcccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||||||||||  ||||||||| |||| |||||||| | ||||| |||||||||||||    
T  31936651 tggattggagagctgctctctctcccagactaggtcatattggaccgaactaggtcaacaatctt 31936587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 21801354 - 21801429
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgct--ctctcccagattaggccatattgg-ctgaactgg 145  Q
    |||||||||||||||  || || |||||||||||||||||  ||| ||||||||||| |||||||| |||||||||    
T  21801354 cttttgtaacacttttatcttagtggattggagagctgctcgctcccccagattaggtcatattggactgaactgg 21801429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 44312563 - 44312794
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44312563 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 44312661  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 208  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| ||| ||| || ||    
T  44312662 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttccttttatcgcttatcttgttt-tgctttggtatct 44312760  T
Q  209 ctttgtgtgcttttgttatacactagtctagggc 242  Q
    ||||||||| ||||| |||||||| |||||||||    
T  44312761 ctttgtgtggttttgctatacacttgtctagggc 44312794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 11098877 - 11099110
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgc 111  Q
    |||||||||||||||||||| ||| ||||||||| |||||  |||||  | |||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  11098877 caaagggtagaatctagggtttgttcttgtgtaa-gcttgcaagctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgc 11098975  T
Q  112 tctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagct 208  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| ||| || ||    
T  11098976 tctctcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcctttcttccttatcttgttt-tgctttggtatct 11099074  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||| ||||| | ||||||||||||||||||    
T  11099075 ctttgtgtggttttgctctacactagtctagggctg 11099110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 14291631 - 14291402
Alignment:
Q  18 gggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctc 115  Q
    |||||||||||||||  ||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||| ||||||||||||||||||||||||||    
T  14291631 gggtagaatctagggcttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 14291533  T
Q  116 tccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctcttt 212  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||    
T  14291532 tcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttgttatctcttt 14291434  T
Q  213 gtgtgcttttgttatacactagtctagggctg 244  Q
    ||||| ||||| | |||| |||||||||||||    
T  14291433 gtgtggttttgctctacattagtctagggctg 14291402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 32246933 - 32246701
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    ||||||||| |||||||||| ||| | |||||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32246933 caaagggtataatctagggtttgttcatgtgtaaagcttgaaagctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 32246836  T
Q  113 ctct--cccagattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttcttcc----tttcttgcttatcttgtttatgc-ttgtt 204  Q
    ||||  ||||||||||||||||||||||||||  |||||||||||||  ||||||||||||||||||    ||||||||||||||||||||||| |||      
T  32246835 ctctcccccagattaggccatattggctgaacaaggtcaacaatcttgttcggtgttttgttcttcctttttttcttgcttatcttgtttatgctttgga 32246736  T
Q  205 agctctttgtgtgcttttgttatacactagtctagg 240  Q
    | ||| ||||||| ||||| ||||||||||||||||    
T  32246735 atctc-ttgtgtggttttgctatacactagtctagg 32246701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 39811928 - 39812094
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39811928 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 39812025  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttccttt 179  Q
    |||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  39812026 ctctcccccagattaggccatattggctgaactggttcaacaatcttctcggtgttttgttctttcttt 39812094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 64 - 244
Target Start/End: Original strand, 9296401 - 9296584
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||     
T  9296401 ttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctcccccaaattaggccatattggctgaactgggtcaacaatcttctt 9296500  T
Q  161 ggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttgttatacactagtctagggctg 244  Q
    |||||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||| ||||| | |||||||| |||||||||    
T  9296501 ggtgttttgttcttcctttcttgcttttcttgttt-tgctttgttatctctttgtgtggttttgctctacactagactagggctg 9296584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 25398592 - 25398457
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||| |     
T  25398592 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggctgaactgggtcaacaatcttttt 25398493  T
Q  161 ggtgt-tttgttcttcctttcttgcttatcttgttt 195  Q
    ||||| ||||||||||||||||||||||||||||||    
T  25398492 ggtgtgtttgttcttcctttcttgcttatcttgttt 25398457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 64 - 192
Target Start/End: Complemental strand, 3491847 - 3491716
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |     
T  3491847 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatctt-tt 3491749  T
Q  161 ggtgt-tttgttcttcctttcttgcttatcttg 192  Q
    ||||| |||||||||||||||||||||||||||    
T  3491748 ggtgtgtttgttcttcctttcttgcttatcttg 3491716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 25403730 - 25403595
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||||||||||| |||||||||||| |     
T  25403730 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggctgaactgagtcaacaatcttttt 25403631  T
Q  161 ggtgt-tttgttcttcctttcttgcttatcttgttt 195  Q
    ||||| ||||||||||||||||||||||||||||||    
T  25403630 ggtgtgtttgttcttcctttcttgcttatcttgttt 25403595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 230
Target Start/End: Complemental strand, 19344541 - 19344347
Alignment:
Q  40 tgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattg 135  Q
    |||||||||||||| | ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  ||||||||||| ||||    
T  19344541 tgtgtaaagcttgaaaagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccctagattaggccacattg 19344444  T
Q  136 gctgaactgggtcaacaatctt-ctcggtgttttgttctt---cctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttataca 230  Q
    |||||||||||||||||||||| |||||||||||||||||   | ||| | | ||||||||  ||||||||||||||||| ||||| ||||| ||||||    
T  19344443 gctgaactgggtcaacaatcttgctcggtgttttgttcttttccttttatcgtttatcttg--tatgcttgttagctcttagtgtggttttgctataca 19344347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 230
Target Start/End: Complemental strand, 19349399 - 19349205
Alignment:
Q  40 tgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattg 135  Q
    |||||||||||||| | ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  ||||||||||| ||||    
T  19349399 tgtgtaaagcttgaaaagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccctagattaggccacattg 19349302  T
Q  136 gctgaactgggtcaacaatctt-ctcggtgttttgttctt---cctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttataca 230  Q
    |||||||||||||||||||||| |||||||||||||||||   | ||| | | ||||||||  ||||||||||||||||| ||||| ||||| ||||||    
T  19349301 gctgaactgggtcaacaatcttgctcggtgttttgttcttttccttttatcgtttatcttg--tatgcttgttagctcttagtgtggttttgctataca 19349205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 40738926 - 40738810
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctctccc-agattaggccatattggctgaactgggtcaacaatcttctcggtgt-tttgttct 173  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||    
T  40738926 ttgtaacactttcatcatagtggattggagagctgctctccccccagattaggtcatattggctgaactgggtcaacaatctt-ttggtgtgtttgttct 40738828  T
Q  174 tcctttcttgcttatctt 191  Q
    |||||||| |||||||||    
T  40738827 tcctttctagcttatctt 40738810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 21630030 - 21629944
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct-cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||    
T  21630030 cttttgtaacactttcatcatagtggattggagagctgctctctccccagattaggtcatattggactgaactgggtcaacaatctt 21629944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 8040147 - 8040060
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| |||||||||||||||||||||    
T  8040147 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggactgaactgggtcaacaatctt 8040060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 13569415 - 13569331
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaat 154  Q
    |||||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | ||||||||||||||||    
T  13569415 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaat 13569331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 28259189 - 28259274
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||||||||||||||||||  |||| |||||| |||||||| | |||||||||||||||||||    
T  28259189 tttgtaacactttcatcatagtggattggagagctgctctctcccccaaattaggtcatattggaccgaactgggtcaacaatctt 28259274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 157
Target Start/End: Complemental strand, 20522308 - 20522220
Alignment:
Q  73 ccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||||||||| ||||| |||||||||| | |||||||||||  |||||||| |||||||| | |||||||||||||||||||    
T  20522308 ccttttgtaacactttcatcatagtggattggagggttgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 20522220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 10445454 - 10445541
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| | ||| |||||||||||||||||||||  ||||||||||| |||||||| | ||||||| |||||||||||    
T  10445454 cttttgtaacactttcataatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactggatcaacaatctt 10445541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 17865290 - 17865203
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||||  |||||||| |||||| | |||||||||||||||||||||    
T  17865290 cttttgtaacactttcatcatagtggattggagggttgctctctcccccagattaggtcatattcgactgaactgggtcaacaatctt 17865203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 34682344 - 34682431
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| | ||| |||||||||||||||||||||  ||||||||| | |||||||| | |||||||||||||||||||    
T  34682344 cttttgtaacactttcattatagtggattggagagctgctctctcccccagattatgtcatattggaccgaactgggtcaacaatctt 34682431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 34388945 - 34388859
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatct 156  Q
    |||||||||||||||| ||||| |||||||||||||| ||||||  ||||||||||| |||||||| | ||| ||||||||||||||    
T  34388945 cttttgtaacactttcatcatagtggattggagagctactctctcccccagattaggtcatattggaccgaattgggtcaacaatct 34388859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 14699018 - 14699104
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||| ||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  14699018 cttttgtaac-ctttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 14699104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 25407719 - 25407663
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc 119  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||    
T  25407719 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctccc 25407663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 31056131 - 31056044
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattg-gctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| || || ||||||||||||||||||||||||  |||||||| |||||||  | ||||| |||||||||||||    
T  31056131 cttttgtaacactttcatcttagtggattggagagctgctctctcccctagattaggtcatattgaaccgaactaggtcaacaatctt 31056044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 33528631 - 33528718
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||| | ||||||||  |||| |||||| |||||||| | |||||||||||||||||||    
T  33528631 cttttgtaacactttcatcatagtggattggagggttgctctctttcccatattaggtcatattggaccgaactgggtcaacaatctt 33528718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 10707262 - 10707348
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctg--ctctctcccagattaggccatattgg-ctgaactgggtcaacaatct 156  Q
    |||||||||||||||| ||||| |||||||||||| ||  ||||| |||| |||||| |||||||| | ||||||||||||||||||    
T  10707262 cttttgtaacactttcatcatagtggattggagagttgttctctcccccatattaggtcatattggaccgaactgggtcaacaatct 10707348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 8390160 - 8390244
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaat 154  Q
    ||||| |||||||||| ||||| |||||||||||||||||||||  |||| |||||| ||| |||| | ||||||||||||||||    
T  8390160 cttttttaacactttcatcatagtggattggagagctgctctctcccccaaattaggtcattttggaccgaactgggtcaacaat 8390244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 42039684 - 42039766
Alignment:
Q  79 gtaacactttc-tcatattggattggagagctgctctctcc--cagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||| ||||| |||||| ||||||||||||||||  ||||||||| |||||||| | ||||| | |||||||||||    
T  42039684 gtaacactttcatcatagtggattagagagctgctctctcccacagattaggtcatattggaccgaactagatcaacaatctt 42039766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 16940219 - 16940306
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctg--ctctctcccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||| ||||  || || ||||||||| | |||||||| | ||| |||||||||||||||    
T  16940219 cttttgtaacactttcatcatagtggattggagggctgatctttcccccagattatgtcatattggaccgaattgggtcaacaatctt 16940306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 17010884 - 17010971
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctg--ctctctcccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||| ||||  || || ||||||||| | |||||||| | ||| |||||||||||||||    
T  17010884 cttttgtaacactttcatcatagtggattggagggctgatctttcccccagattatgtcatattggaccgaattgggtcaacaatctt 17010971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 39483018 - 39482931
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||| |||| ||||| ||||||||||  |||||||||  |||| |||||| |||||||| | ||||| |||||||||||||    
T  39483018 cttttgtaacattttcatcatagtggattggaggcctgctctctcccccatattaggtcatattggaccgaactaggtcaacaatctt 39482931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 35001 - 35234
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    ||||||||||| |||||||| ||| | ||||||||||||||  ||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  35001 caaagggtagagtctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttctaaccttttgtaacactttctcatattggattggagagctgct 35099  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagct 208  Q
    |||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    ||||||||||||| ||||| | || ||    
T  35100 ctctcccccagattaggccatattggctgaactgggttaacaatcttctcggtgttttgttcttccttttaccgcttatcttgttt-tgctttggtatct 35198  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||| ||||| ||||||||||||||||||||    
T  35199 ctttgtgtggttttgctatacactagtctagggctg 35234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 41398381 - 41398153
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41398381 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 41398284  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctc 209  Q
    |||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     |||||||||||||||| ||| || |||    
T  41398283 ctctcccccagattaggccatattggctgacctgggtcaacaatcttctcggtgttttgttcttcctt-----cttatcttgtttatgctttggtatctc 41398189  T
Q  210 tttgtgtg--cttttgttatacactagtctagggctg 244  Q
    ||||||||   ||||| ||||||||||| ||||||||    
T  41398188 tttgtgtggttttttgctatacactagt-tagggctg 41398153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 24787314 - 24787547
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||| | ||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||||||||||||||||||||||||||    
T  24787314 caaagggtagaatctaggatttgttcttgtgtaatgcttgaaggctattgtttcttgtaaccctttgtaacactttctcatattggattggagagctgct 24787413  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 208  Q
    ||| |||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||  ||| |||||| ||    
T  24787414 ctcccccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttccttttcttgcttatcttgtt--tgctttgttatct 24787511  T
Q  209 ctttgtgtgcttttgttatacactagtctagggctg 244  Q
    ||||||||| ||||| | ||||  ||||||||||||    
T  24787512 ctttgtgtggttttgctctacataagtctagggctg 24787547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 40 - 244
Target Start/End: Original strand, 25445055 - 25445263
Alignment:
Q  40 tgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctct--cccagattaggccatattgg 136  Q
    |||||||||||||||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  25445055 tgtgtaaagcttgataagctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagattaggccatattgg 25445152  T
Q  137 ctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacacta 233  Q
    ||||||||||||||||||||| |||||||||||||||||  | |||   | |||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  25445153 ctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttacgcttgttagctctttgtgtggttttgctatacacta 25445252  T
Q  234 gtctagggctg 244  Q
    |  ||||||||    
T  25445253 gcttagggctg 25445263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 41390726 - 41390498
Alignment:
Q  14 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 112  Q
    |||||||||||||||||||| ||| | ||||||||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41390726 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 41390629  T
Q  113 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctc 209  Q
    |||||||  ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||     |||||||||||||||| ||| || |||    
T  41390628 ctctcccccagattaggccatattggctgatctgggtcaacaatcttctcgatgttttgttcttcctt-----cttatcttgtttatgctttgatatctc 41390534  T
Q  210 tttgtgtg--cttttgttatacactagtctagggctg 244  Q
    ||||||||   ||||| ||||||||||| ||||||||    
T  41390533 tttgtgtggttttttgctatacactagt-tagggctg 41390498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 40 - 244
Target Start/End: Complemental strand, 39445618 - 39445411
Alignment:
Q  40 tgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattgg 136  Q
    |||||||||||||||| |||||||  ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||  |||||||||||||||||    
T  39445618 tgtgtaaagcttgataagctagag--tcttgtaaccttttgtaacactt-cacatattggattggagagctgctctctcccccagattaggccatattgg 39445522  T
Q  137 ctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacacta 233  Q
    ||||||||||||||||||||| |||||||||||||||||  | |||   | ||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  39445521 ctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacacta 39445422  T
Q  234 gtctagggctg 244  Q
    |  ||||||||    
T  39445421 gcttagggctg 39445411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 40 - 244
Target Start/End: Original strand, 44023840 - 44024046
Alignment:
Q  40 tgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattgg 136  Q
    |||||||||||||| | |||||||  ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||  |||||||||||||||||    
T  44023840 tgtgtaaagcttgacaagctagag--tcttgtaaccttttgtaacactt-cacatattggattggagagctgctctctcccccagattaggccatattgg 44023936  T
Q  137 ctgaactgggtcaacaatctt-ctcggtgttttgttctt-cctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactag 234  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||     ||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  44023937 ctgaactgggtcaacaatcttgctcggtgttttgttctttcctttaccatttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag 44024036  T
Q  235 tctagggctg 244  Q
      ||||||||    
T  44024037 cttagggctg 44024046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 40 - 244
Target Start/End: Original strand, 1054978 - 1055185
Alignment:
Q  40 tgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattgg 136  Q
    |||||||||||||||| |||||||  ||||| ||||||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||    
T  1054978 tgtgtaaagcttgataagctagag--tcttgtaaccttttgtaacactt-cacatattggattggagagttgctctctcccccagattaggccatattgg 1055074  T
Q  137 ctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacacta 233  Q
    ||||||||||||||||||||| |||||||||||||||||  | |||   | ||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  1055075 ctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacacta 1055174  T
Q  234 gtctagggctg 244  Q
    |  ||||||||    
T  1055175 gcttagggctg 1055185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 24202769 - 24202904
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |     
T  24202769 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttttt 24202868  T
Q  161 ggtgt-tttgttcttcctttcttgcttatcttgttt 195  Q
    ||||| ||||||||||||||||||||||||||||||    
T  24202869 ggtgtgtttgttcttcctttcttgcttatcttgttt 24202904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 35 - 174
Target Start/End: Original strand, 43988424 - 43988566
Alignment:
Q  35 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctct--cccagattaggcca 130  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||  ||||||||||||||    
T  43988424 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggcca 43988521  T
Q  131 tattggctgaactgggtcaacaatctt-ctcggtgttttgttctt 174  Q
     |||||||||||||||| ||||||||| || ||||||||||||||    
T  43988522 cattggctgaactgggtaaacaatcttgcttggtgttttgttctt 43988566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 19361432 - 19361564
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  | |||||| ||||||| ||||||||||||||||||||| |     
T  19361432 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccatattaggtcatattgactgaactgggtcaacaatctt-tt 19361530  T
Q  161 ggtgt-tttgttcttcc-tttcttgcttatcttg 192  Q
    ||||| ||||||||||| ||||||||||||||||    
T  19361531 ggtgtgtttgttcttccttttcttgcttatcttg 19361564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 19380072 - 19380204
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  | |||||| ||||||| ||||||||||||||||||||| |     
T  19380072 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccatattaggtcatattgactgaactgggtcaacaatctt-tt 19380170  T
Q  161 ggtgt-tttgttcttcc-tttcttgcttatcttg 192  Q
    ||||| ||||||||||| ||||||||||||||||    
T  19380171 ggtgtgtttgttcttccttttcttgcttatcttg 19380204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 19358843 - 19358975
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  | |||||| ||||||| ||||||||||||||||||||| |     
T  19358843 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccatattaggtcatattgactgaactgggtcaacaatctt-tt 19358941  T
Q  161 ggtgt-tttgttcttcc-tttcttgcttatcttg 192  Q
    | ||| ||||||||||| ||||||||||||||||    
T  19358942 gatgtgtttgttcttccttttcttgcttatcttg 19358975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 47703946 - 47704033
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  47703946 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 47704033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 26644909 - 26644994
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  26644909 tttgtaacactttcatcataatggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 26644994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 9476348 - 9476261
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||| | |||||||||||||||||||    
T  9476348 cttttgtaatactttcatcatagtggattggagagctgctctctcccctagattaggtcatattggaccgaactgggtcaacaatctt 9476261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 19073015 - 19072928
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| || || |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  19073015 cttttgtaacactttcatcttagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 19072928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 19120905 - 19120818
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| || || |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  19120905 cttttgtaacactttcatcttagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 19120818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 13598485 - 13598398
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| ||||||| || |||||||||||||  |||||||| |||||||| | |||||||||||||||||||    
T  13598485 cttttgtaacactttcatcatagtggattgaagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 13598398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 16124526 - 16124613
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | |||||| ||||||||||||    
T  16124526 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaactgagtcaacaatctt 16124613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 27104382 - 27104469
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||||||||||||||  |||||||||||  ||||||| | |||||| ||||||||||||    
T  27104382 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggttatattggaccgaactgtgtcaacaatctt 27104469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 29651898 - 29651811
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | |||||||||||| ||||||    
T  29651898 cttttgtaacactttcatcatagtggattggagtgctgctctctcccccagattaggtcatattggaccgaactgggtcaaaaatctt 29651811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 3281793 - 3281708
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||  |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||| ||||||    
T  3281793 tttgtaacactttcatcatcgtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaataatctt 3281708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 37069855 - 37069770
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| ||||| |||||| |||||||||||  |||||||| |||||||| | |||||||||||||||||||    
T  37069855 tttgtaacactttcatcatagtggatcggagagatgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 37069770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 775759 - 775672
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| || || |||||||||||||| ||||||  ||||||||||| |||||||| | ||| |||||||||||||||    
T  775759 cttttgtaacactttcatcttagtggattggagagctactctctcccccagattaggtcatattggaccgaattgggtcaacaatctt 775672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 47098837 - 47098921
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||||||| || || |||||||||| ||||||||||  |||||||| || |||||||| | |||||||||||||||||||    
T  47098837 ttgtaacactttcatcttagtggattggagggctgctctctcccccagattcggtcatattggaccgaactgggtcaacaatctt 47098921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 13604635 - 13604720
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||| |||| ||||| ||||||||||||||||||||||||  | |||||| |||||||  |  ||||||||||||||||||    
T  13604635 tttgtaacattttcatcatagtggattggagagctgctctctcccccatattaggtcatattgaacctaactgggtcaacaatctt 13604720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 21536581 - 21536666
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggcca-tattggctgaactgggtcaacaatctt 157  Q
    |||||||||||||| | ||| |||||||||||||||||||||  ||||||||||| || | ||  | |||||||||||||||||||    
T  21536581 tttgtaacactttcattatagtggattggagagctgctctctcccccagattaggtcattttttaccgaactgggtcaacaatctt 21536666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 40 - 244
Target Start/End: Complemental strand, 481 - 274
Alignment:
Q  40 tgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattgg 136  Q
    |||||||||||||||| |||||||  ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||  |||||||||||||||||    
T  481 tgtgtaaagcttgataagctagag--tcttgtaaccttttgtaacactt-cacatattggattggagagctgctctctcccccagattaggccatattgg 385  T
Q  137 ctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacacta 233  Q
    ||||||||||||||||||||| |||||||||||||||||  | |||   | ||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  384 ctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacacta 285  T
Q  234 gtctagggctg 244  Q
    |  ||||||||    
T  284 gcttagggctg 274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 17952 - 18087
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |     
T  17952 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttttt 18051  T
Q  161 ggtgt-tttgttcttcctttcttgcttatcttgttt 195  Q
    ||||| ||||||||||||||||||||||||||||||    
T  18052 ggtgtgtttgttcttcctttcttgcttatcttgttt 18087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 24045 - 24180
Alignment:
Q  64 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 160  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |     
T  24045 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttttt 24144  T
Q  161 ggtgt-tttgttcttcctttcttgcttatcttgttt 195  Q
    ||||| ||||||||||||||||| ||||||||||||    
T  24145 ggtgtgtttgttcttcctttctttcttatcttgttt 24180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 35 - 230
Target Start/End: Original strand, 2211 - 2409
Alignment:
Q  35 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggcca 130  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||||| |||||||||  |||||||||||    
T  2211 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctactctctcccccagattaggcca 2308  T
Q  131 tattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgtta 226  Q
     |||||||||||||||||||||||||| ||||||| |||||||   ||||||| | | ||||||||  ||||||||||||||||| ||||| ||||| ||    
T  2309 cattggctgaactgggtcaacaatcttgctcggtg-tttgttcgttttcctttatcgtttatcttg--tatgcttgttagctcttagtgtggttttgcta 2405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 35 - 230
Target Start/End: Original strand, 148916 - 149114
Alignment:
Q  35 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggcca 130  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||||| |||||||||  |||||||||||    
T  148916 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctactctctcccccagattaggcca 149013  T
Q  131 tattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgtta 226  Q
     |||||||||||||||||||||||||| ||||||| |||||||   ||||||| | | ||||||||  ||||||||||||||||| ||||| ||||| ||    
T  149014 cattggctgaactgggtcaacaatcttgctcggtg-tttgttcgttttcctttatcgtttatcttg--tatgcttgttagctcttagtgtggttttgcta 149110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 35 - 217
Target Start/End: Original strand, 14269 - 14455
Alignment:
Q  35 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggcca 130  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||||    
T  14269 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggcca 14366  T
Q  131 tattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtg 217  Q
     |||||||||||||||||||||||||| || ||||||||||||   ||| ||| | | ||||||||  ||||||||||||||||| |||||    
T  14367 cattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgtttatcttg--tatgcttgttagctcttagtgtg 14455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 19104 - 19323
Alignment:
Q  14 caaagggtagaatctagggtct-gtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctg 110  Q
    ||||||||||| |||||||| | |||||||||||||||||||| ||||||  |||||| ||| ||||||||||||  || ||||||| ||||||||||||    
T  19104 caaagggtaga-tctagggttttgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacactcacatattgtattggagagctg 19200  T
Q  111 ctctctccc--agattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgtt 204  Q
    |||||||||  ||||||||||| | |||||||||||||||||||||||| ||||||| |||||||   ||| ||| | | ||||||||  ||||||||||    
T  19201 ctctctcccccagattaggccacaatggctgaactgggtcaacaatcttgctcggtg-tttgttcgttttcttttatcgtttatcttg--tatgcttgtt 19297  T
Q  205 agctctttgtgtgcttttgttataca 230  Q
    ||||||| ||||| ||||| ||||||    
T  19298 agctcttagtgtggttttgctataca 19323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 217
Target Start/End: Original strand, 181980 - 182110
Alignment:
Q  91 catattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgc 184  Q
    |||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||| || ||||||||||||   ||| ||| | |     
T  181980 catattggattggagagctgctctctcccccagattaggccacattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgt 182079  T
Q  185 ttatcttgtttatgcttgttagctctttgtgtg 217  Q
    ||||||||  ||||||||||||||||| |||||    
T  182080 ttatcttg--tatgcttgttagctcttagtgtg 182110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 125 - 244
Target Start/End: Original strand, 300 - 419
Alignment:
Q  125 aggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttg 223  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||| ||||||||||||| ||| || ||| ||||||||||| |||||    
T  300 aggccatattggctgaactaggtcaacaatcttcttggtgttttgttctttctttctagcttatcttgttt-tgctttattatctctttgtgtggttttg 398  T
Q  224 ttatacactagtctagggctg 244  Q
     |   ||||||| ||||||||    
T  399 ctcctcactagtttagggctg 419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 8431 - 8516
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  8431 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 8516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 85768 - 85684
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatct 156  Q
    |||||||||||||| ||||  ||||||||||||| ||||||||||  |||||||| |||||||| ||||||||||||||||||||    
T  85768 tttgtaacactttcatcatggtggattggagagccgctctctcccccagattaggtcatattggactgaactgggtcaacaatct 85684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 5770 - 5683
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| ||||||| || |||||||||||||  |||||||| |||||||| | |||||||||||||||||||    
T  5770 cttttgtaacactttcatcatagtggattgaagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 5683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 2579 - 2492
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggct-gaactgggtcaacaatctt 157  Q
    |||||||||||||||| ||||| |||||||||| |||||| ||||||  |||||||| ||||||||   |||||||||||||||||||    
T  2579 cttttgtaacactttcatcatagtggattggagggctgctgtctcccccagattaggtcatattggagcgaactgggtcaacaatctt 2492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 133292 - 133377
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    ||||||||| |||| ||||| ||||||||||||||||||||||||  | |||||| |||||||  |  ||||||||||||||||||    
T  133292 tttgtaacattttcatcatagtggattggagagctgctctctcccccatattaggtcatattgaacctaactgggtcaacaatctt 133377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 43973 - 44058
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| |||||||||||||||||||||  |||||| |||  |||||||| | |||||||||||||||||||    
T  43973 tttgtaacactttcatcatagtggattggagagctgctctctcccccagaatagatcatattggaccgaactgggtcaacaatctt 44058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 36844 - 36929
Alignment:
Q  76 tttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||| ||||| ||| |||| |||||||||||| ||  |||||||| |||||||| | |||||||||||||||||||    
T  36844 tttgtaacactttcatcatagtgggttggcgagctgctctcttccctagattaggtcatattggaccgaactgggtcaacaatctt 36929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 10816 - 10729
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 157  Q
    |||||||||||||||| || || |||||||||||||||||||||  |||| |||||| |||||||| | |||||||||||| ||||||    
T  10816 cttttgtaacactttcatcttagtggattggagagctgctctctcccccaaattaggtcatattggaccgaactgggtcaataatctt 10729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 45337 - 45253
Alignment:
Q  77 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattg-gctgaactgggtcaacaatctt 157  Q
    ||||||| ||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||  | |||||| ||||||||||||    
T  45337 ttgtaacgctttcatcatagtggattggagagctgctctctcccccagattaggtcatattgaaccgaactgagtcaacaatctt 45253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 17350 - 17266
Alignment:
Q  74 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaat 154  Q
    |||||||||||||||| ||||| |||||||||| | ||||||||  |||| |||||| |||||||  | ||||||||||||||||    
T  17350 cttttgtaacactttcatcataatggattggagggttgctctctttcccatattaggtcatattgaaccgaactgggtcaacaat 17266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University