View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14403_high_12 (Length: 380)

Name: NF14403_high_12
Description: NF14403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14403_high_12
NF14403_high_12
[»] chr6 (5 HSPs)
chr6 (1-370)||(30758542-30758919)
chr6 (70-333)||(18191829-18192092)
chr6 (72-257)||(31855736-31855920)
chr6 (219-333)||(31855935-31856046)
chr6 (70-235)||(21396377-21396532)
[»] chr3 (4 HSPs)
chr3 (70-370)||(36163466-36163781)
chr3 (98-333)||(37463790-37464022)
chr3 (85-156)||(20884324-20884392)
chr3 (83-135)||(19801880-19801932)
[»] chr8 (2 HSPs)
chr8 (70-370)||(32565302-32565612)
chr8 (83-136)||(17864627-17864680)
[»] chr2 (3 HSPs)
chr2 (71-308)||(4753612-4753847)
chr2 (71-155)||(36669048-36669132)
chr2 (71-155)||(31621998-31622082)
[»] chr4 (4 HSPs)
chr4 (70-235)||(53226763-53226928)
chr4 (84-155)||(31409407-31409478)
chr4 (70-141)||(52190276-52190347)
chr4 (84-122)||(30830024-30830062)
[»] chr5 (4 HSPs)
chr5 (71-155)||(16727896-16727980)
chr5 (72-141)||(16306720-16306789)
chr5 (78-122)||(35968622-35968666)
chr5 (84-122)||(38921552-38921590)
[»] chr1 (5 HSPs)
chr1 (71-155)||(26529592-26529676)
chr1 (71-155)||(36574046-36574130)
chr1 (83-177)||(49917484-49917578)
chr1 (87-147)||(17332919-17332979)
chr1 (84-122)||(35063548-35063586)
[»] chr7 (3 HSPs)
chr7 (256-316)||(25271885-25271946)
chr7 (84-122)||(41739719-41739757)
chr7 (128-213)||(28643175-28643260)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 30758919 - 30758542
Alignment:
Q  1 ttgggtccttgaaagtgtcccttgcagtcacaccagttctttgatcaataaattgaatnnnnnnnctcaccaatgtatgttatgttagtcaaatgcatcc 100  Q
    |||||||||||||||||||||| || |||||||| ||  |||||||||||||||||||         |  ||||||||||| ||||||||||||||||||    
T  30758919 ttgggtccttgaaagtgtccctcgctgtcacacccgtcatttgatcaataaattgaatcaaaaactccctcaatgtatgttttgttagtcaaatgcatcc 30758820  T
Q  101 aaaacattaatttggtgttaacggtgctgatgtgtctgttacccttgccacttcaaccacatcgttggccttccacgcaggcagggacgtaattgcatgg 200  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30758819 aaaacattaacttggtgttaacggtgcttatgtgtctgttgcccttgccacttcaaccacattgttggccttccacgcaggcagggacgtaattgcatgg 30758720  T
Q  201 gatagcaaacattgcaacagtcatttgagtccctccttcattctcactcttcttcttcttctttcctcatcaaacaaacaatctgcaacctcaattccaa 300  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||   | |||||||||| |||||||||||||||||||||||||||||||||||||    
T  30758719 gatagcaaacattgcaacaatcatttgagtccctcctttattctcac---tattcttcttctctcctcatcaaacaaacaatctgcaacctcaattccaa 30758623  T
Q  301 accctaaaaccccattctcaatctcaatttctc-----------tcaaagttaataccaaattgaattgagtttgaatatt 370  Q
    | |||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||    
T  30758622 atcctaaaaccccattctcaatctcaatttctcctctcttattttcaaagttaataccaaattgaattgagtttgaatatt 30758542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 70 - 333
Target Start/End: Original strand, 18191829 - 18192092
Alignment:
Q  70 ccaatgtatgttatgttagtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgtctgttacccttgccacttcaaccacatcgttggc 169  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||| |||| |||||||||||||| |||| |||||||||||||||||||| ||||||    
T  18191829 ccaatgtatgttatgttagtcaaatgcatccaaaacgttaacttggtattaatggtgctgatgtgtccgttatccttgccacttcaaccacattgttggc 18191928  T
Q  170 cttccacgcaggcagggacgtaattgcatgggatagcaaacattgcaacagtcatttgagtccctccttcattctcactcttcttcttcttctttcctca 269  Q
    |||||||| ||||| |||||||||||||||||||| ||||||||||||||| ||||  |||||||| || |||||||||||| |||||||||| ||||||    
T  18191929 cttccacgtaggcaaggacgtaattgcatgggataacaaacattgcaacaggcattatagtccctcatttattctcactctttttcttcttctctcctca 18192028  T
Q  270 tcaaacaaacaatctgcaacctcaattccaaaccctaaaaccccattctcaatctcaatttctc 333  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |||||    
T  18192029 tcaaacaaacaatctgcaacctcaattccaaaccctaaaacccaattttcaatcccaaattctc 18192092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 72 - 257
Target Start/End: Original strand, 31855736 - 31855920
Alignment:
Q  72 aatgtatgttatgttagtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgtctgttacccttgccacttcaaccacatcgttggcct 171  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||| |||| |||    
T  31855736 aatgtatgttatgttagtcaaatgtatccaaaacattaatttggtgttaacggtgctgatgtgtctattacacttgccacttcaaccgcattgttgacct 31855835  T
Q  172 tccacgcaggcagggacgtaattgcatgggatagcaaacattgcaacagtcatttgagtccctccttcattctcactcttcttctt 257  Q
    |||| || || || ||||||||||||||||||| |||||||| ||| ||| ||||| || ||||||| ||||||||||||||||||    
T  31855836 tccatgctggtagagacgtaattgcatgggataccaaacattacaaaagtaatttgtgt-cctcctttattctcactcttcttctt 31855920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 333
Target Start/End: Original strand, 31855935 - 31856046
Alignment:
Q  219 agtcatttgagtccctccttcattctcactcttcttcttcttctttcctcatcaaacaaacaatctgcaacctcaattccaaaccctaaaaccccattct 318  Q
    |||||| || |||||||||| |||||||||||||||||| |   | ||||||||||||||||| ||| ||||| |||| ||||||||||||||||||| |    
T  31855935 agtcatctgtgtccctcctttattctcactcttcttcttatc--tccctcatcaaacaaacaa-ctgtaaccttaatttcaaaccctaaaaccccatttt 31856031  T
Q  319 caatctcaatttctc 333  Q
    |||| ||||||||||    
T  31856032 caatttcaatttctc 31856046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 21396377 - 21396532
Alignment:
Q  70 ccaatgtatgttatgttagtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgtctgttacccttgccacttcaaccacatcgttggc 169  Q
    |||||||||||| | |||||||||| ||||||||||  ||| |||||||||||||| |          ||||| ||||||||| || | |||| ||| ||    
T  21396377 ccaatgtatgttcttttagtcaaatacatccaaaacgctaacttggtgttaacggtcc----------gttacacttgccactgcagctacattgtttgc 21396466  T
Q  170 cttccacgcaggcagggacgtaattgcatgggatagcaaacattgcaacagtcatttgagtccctc 235  Q
    ||||||||| |||||||||  |||||||| ||||| ||||||||||||  |||||||| |||||||    
T  21396467 cttccacgctggcagggactcaattgcataggataacaaacattgcaatggtcatttgtgtccctc 21396532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 70 - 370
Target Start/End: Original strand, 36163466 - 36163781
Alignment:
Q  70 ccaatgtatgttatgttagtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgtctgttacccttgccacttcaaccacatcgttggc 169  Q
    |||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||    
T  36163466 ccaatgtacgttatgttagtcaaatgcatccaaaacgttaacttggtgttaacggtgctgatgtgtccgttatccttgccacttcaaccacattgttggc 36163565  T
Q  170 cttccacgcaggcagggacgtaattgcatgggatagcaaacattgcaacagtcatttgagtccctccttcattctcactcttcttcttcttctt---tcc 266  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||| || ||||| |||||||| || ||||||||||||||||||||||||   |||    
T  36163566 cttccacgtaggcagggacgtaattgcatgggataacaaacattgcaataggcattttagtccctcatttattctcactcttcttcttcttcttctctcc 36163665  T
Q  267 tcatcaaacaaacaatctgcaacctcaattccaaaccctaaaaccccattctcaatctcaatttctc-----------tcaaagttaatacc-aaattga 354  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| ||| |||||           |||||||||||||| |||||||    
T  36163666 tcatcaaacaaacaatctgcaacctcaattcgaaaccctaaaacccaattttcaatcccaaattctcctctctcattttcaaagttaataccaaaattga 36163765  T
Q  355 attgagtttgaatatt 370  Q
    ||||||||||||||||    
T  36163766 attgagtttgaatatt 36163781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 98 - 333
Target Start/End: Original strand, 37463790 - 37464022
Alignment:
Q  98 tccaaaacattaatttggtgttaacggtgctgatgtgtctgttacccttgccacttcaaccacatcgttggccttccacgcaggcagggacgtaattgca 197  Q
    |||||||| |||| |||||||||||| |||||| ||||| ||| |  |||| ||||||  | ||| ||||||||||||| |   || |||||||||||||    
T  37463790 tccaaaacgttaacttggtgttaacgatgctgaagtgtccgttgcatttgctacttcactcgcattgttggccttccacactatcaaggacgtaattgca 37463889  T
Q  198 tgggatagcaaacattgcaacagtcatttgagtccctccttcattctcactcttcttcttcttctttcctcatcaaacaaacaatctgcaacctcaattc 297  Q
    ||||||| |||||||| ||| ||||||||| |||||||||| ||||||| | ||||||||||   | |||||||||||||| || |  ||||||||||||    
T  37463890 tgggataccaaacattacaatagtcatttgtgtccctcctttattctcattattcttcttct--ctccctcatcaaacaaataa-caacaacctcaattc 37463986  T
Q  298 caaaccctaaaaccccattctcaatctcaatttctc 333  Q
    |||||||||||||| |||| ||||||||||||||||    
T  37463987 caaaccctaaaacctcattttcaatctcaatttctc 37464022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 20884324 - 20884392
Alignment:
Q  85 ttagtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgtctgttacccttgccacttcaa 156  Q
    ||||||||||||||||||||| |||| |   || |||||||| |||| ||||| |||| |||||||||||||    
T  20884324 ttagtcaaatgcatccaaaacgttaact---tgataacggtgttgatttgtctattacacttgccacttcaa 20884392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 19801880 - 19801932
Alignment:
Q  83 tgttagtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgt 135  Q
    ||||||||||||  ||||||||| |||| || |||||||||||||| ||||||    
T  19801880 tgttagtcaaatttatccaaaacgttaactttgtgttaacggtgctaatgtgt 19801932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 70 - 370
Target Start/End: Complemental strand, 32565612 - 32565302
Alignment:
Q  70 ccaatgtatgttatgttagtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgtctgttacccttgccacttcaaccacatcgttggc 169  Q
    |||||||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||| ||| ||    
T  32565612 ccaatgtacgttatgttagtcaaatgcatccaaaacgttaacttgatgttaacggtgctgatgtgtccgttatccttgccacttcaaccacattgttcgc 32565513  T
Q  170 cttccacgca-ggcagggacgtaattgcatgggatagcaaacattgcaacagtcatttgagtccctccttcattctcactcttcttcttcttctttcctc 268  Q
    |||||||| | ||||||||||||||||||||||||| || |||||||||||  ||||||||||||||||| ||||||||   |||||||||||| |||||    
T  32565512 cttccacgtagggcagggacgtaattgcatgggataacagacattgcaacaagcatttgagtccctcctttattctcac---tcttcttcttctctcctc 32565416  T
Q  269 atcaaacaaacaatctgcaacctcaattccaaaccctaaaaccccattctcaatctcaatttctc-----------tcaaagttaatacc-aaattgaat 356  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |||||           |||||||||||||| |||||||||    
T  32565415 atcaaacaaacaatctgcaacctcaattccaaaccctaaaacccaattttcaatcccaaattctcctctctcattttcaaagttaataccaaaattgaat 32565316  T
Q  357 tgagtttgaatatt 370  Q
    ||||||||||||||    
T  32565315 tgagtttgaatatt 32565302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 17864680 - 17864627
Alignment:
Q  83 tgttagtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgtc 136  Q
    |||||||||||||||||||||||||||| ||||||||||  ||| |||||||||    
T  17864680 tgttagtcaaatgcatccaaaacattaacttggtgttaattgtgttgatgtgtc 17864627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 71 - 308
Target Start/End: Original strand, 4753612 - 4753847
Alignment:
Q  71 caatgtatgttatgttagtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgtctgttacccttgccacttcaaccacatcgttggcc 170  Q
    ||||||||||| ||||||||||||||||||||||| |||| ||||||||||||| |||||||||||| |||  | || || |||| |  ||| |||||||    
T  4753612 caatgtatgttttgttagtcaaatgcatccaaaacgttaacttggtgttaacggcgctgatgtgtctattaaacatgtcatttcacctccattgttggcc 4753711  T
Q  171 ttccacgcaggcagggacgtaattgcatgggatagcaaacattgcaacagtcatttgagtccctccttcattctcactcttcttcttcttctttcctcat 270  Q
    ||||| || ||||||||| |||||||||  |||| ||||||||||||  |||||||| |||||||||| ||||||||| ||||||||||   | | | ||    
T  4753712 ttccatgctggcagggacttaattgcatatgataacaaacattgcaatggtcatttgtgtccctcctttattctcacttttcttcttctc--tccttaat 4753809  T
Q  271 caaacaaacaatctgcaacctcaattccaaaccctaaa 308  Q
    |||||| ||||| ||||| || |||| |||||||||||    
T  4753810 caaacacacaatttgcaatcttaatttcaaaccctaaa 4753847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 36669132 - 36669048
Alignment:
Q  71 caatgtatgttatgttagtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgtctgttacccttgccacttca 155  Q
    |||||| |||| ||||||||||||||||||||||| |||| ||| | ||||||||| ||||||||  ||||| | ||||||||||    
T  36669132 caatgtctgttctgttagtcaaatgcatccaaaacgttaacttgatattaacggtgatgatgtgttcgttacacatgccacttca 36669048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 31622082 - 31621998
Alignment:
Q  71 caatgtatgttatgttagtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgtctgttacccttgccacttca 155  Q
    |||||| ||||  ||| |||||||||||||||||| |||| ||| || ||||||||||| ||||||  |||| | ||||||||||    
T  31622082 caatgtttgttccgtttgtcaaatgcatccaaaacgttaacttgatgctaacggtgctggtgtgtccattacacatgccacttca 31621998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 53226763 - 53226928
Alignment:
Q  70 ccaatgtatgttatgttagtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgtctgttacccttgccacttcaaccacatcgttggc 169  Q
    |||||||||||| |  ||||||||||||||  |||| |||| || |||||||| |||||||  |||||||||| |||||||||| | |  ||||||||||    
T  53226763 ccaatgtatgttctaatagtcaaatgcatctgaaacgttaacttagtgttaacagtgctgacttgtctgttacacttgccactttagctgcatcgttggc 53226862  T
Q  170 cttccacgcaggcagggacgtaattgcatgggatagcaaacattgcaacagtcatttgagtccctc 235  Q
    ||||| ||| |||||| ||  |||||||  ||||| ||||||||| ||  |||||||| |||||||    
T  53226863 cttccgcgctggcaggaactcaattgcacaggataacaaacattgaaatggtcatttgtgtccctc 53226928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 31409407 - 31409478
Alignment:
Q  84 gttagtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgtctgttacccttgccacttca 155  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||  ||||||||||||    
T  31409407 gttagtcaaatgcatccaaaacgttaacttggtgttaacggtgctgatgtgtcggttatacttgccacttca 31409478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 52190347 - 52190276
Alignment:
Q  70 ccaatgtatgttatgttagtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgtctgtta 141  Q
    ||||||| |||| ||||||||||||||||||||||| |||| ||||||||||  ||||||||||||| ||||    
T  52190347 ccaatgtctgttttgttagtcaaatgcatccaaaacgttaacttggtgttaaatgtgctgatgtgtccgtta 52190276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 30830024 - 30830062
Alignment:
Q  84 gttagtcaaatgcatccaaaacattaatttggtgttaac 122  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  30830024 gttagtcaaatgcatccaaaacgttaacttggtgttaac 30830062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 16727896 - 16727980
Alignment:
Q  71 caatgtatgttatgttagtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgtctgttacccttgccacttca 155  Q
    |||||| ||||  ||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| | ||||||||||    
T  16727896 caatgtctgttccgttagtcaaatgcatccaaaacattaacttgatgttaacggtgctgatgtgtccgttacacatgccacttca 16727980  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 16306789 - 16306720
Alignment:
Q  72 aatgtatgttatgttagtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgtctgtta 141  Q
    |||||||||||||||||||||||||||| ||||| |||| |||| |||||||| ||||||||||||||||    
T  16306789 aatgtatgttatgttagtcaaatgcatctaaaacgttaacttggagttaacggcgctgatgtgtctgtta 16306720  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 35968666 - 35968622
Alignment:
Q  78 tgttatgttagtcaaatgcatccaaaacattaatttggtgttaac 122  Q
    |||| ||||||||||||||||||||||| |||| |||||||||||    
T  35968666 tgttttgttagtcaaatgcatccaaaacgttaacttggtgttaac 35968622  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 38921552 - 38921590
Alignment:
Q  84 gttagtcaaatgcatccaaaacattaatttggtgttaac 122  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  38921552 gttagtcaaatgcatccaaaacgttaacttggtgttaac 38921590  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 26529592 - 26529676
Alignment:
Q  71 caatgtatgttatgttagtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgtctgttacccttgccacttca 155  Q
    |||||| |||| ||||||||||||||||||||||| |||| ||| |||||||||||||||| |||| ||||| | | ||||||||    
T  26529592 caatgtttgttctgttagtcaaatgcatccaaaacgttaacttgatgttaacggtgctgatttgtccgttacacataccacttca 26529676  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 36574046 - 36574130
Alignment:
Q  71 caatgtatgttatgttagtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgtctgttacccttgccacttca 155  Q
    |||||| ||||  |||||||||||||||||||||| |||| ||| || |||||||||||||||||| ||||| | ||||||||||    
T  36574046 caatgtctgttccgttagtcaaatgcatccaaaacgttaacttgatgctaacggtgctgatgtgtccgttacacatgccacttca 36574130  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 177
Target Start/End: Original strand, 49917484 - 49917578
Alignment:
Q  83 tgttagtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgtctgttacccttgccacttcaaccacatcgttggccttccacg 177  Q
    ||||||||||||||||||||||  |||| ||| |||||| |||| ||| ||||| ||||| | |||||||||| |  | | ||||||||||||||    
T  49917484 tgttagtcaaatgcatccaaaatgttaacttgatgttaatggtgttgacgtgtccgttacacatgccacttcagctgctttgttggccttccacg 49917578  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 17332979 - 17332919
Alignment:
Q  87 agtcaaatgcatccaaaacattaatttggtgttaacggtgctgatgtgtctgttacccttg 147  Q
    ||||||||||||||||||| |||||||| |||||| |||||| |||| | |||||| ||||    
T  17332979 agtcaaatgcatccaaaacgttaatttgatgttaaaggtgctcatgtatttgttacacttg 17332919  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 35063586 - 35063548
Alignment:
Q  84 gttagtcaaatgcatccaaaacattaatttggtgttaac 122  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  35063586 gttagtcaaatgcatccaaaacgttaacttggtgttaac 35063548  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 25271946 - 25271885
Alignment:
Q  256 ttcttctttcctc-atcaaacaaacaatctgcaacctcaattccaaaccctaaaaccccatt 316  Q
    ||||||| ||||| |||||||||||||| |||||||||||||||||||||||| ||||||||    
T  25271946 ttcttctctcctccatcaaacaaacaatatgcaacctcaattccaaaccctaagaccccatt 25271885  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 41739719 - 41739757
Alignment:
Q  84 gttagtcaaatgcatccaaaacattaatttggtgttaac 122  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  41739719 gttagtcaaatgcatccaaaacgttaacttggtgttaac 41739757  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 28643175 - 28643260
Alignment:
Q  128 tgatgtgtctgttacccttgccacttcaaccacatcgttggccttccacgcaggcagggacgtaattgcatgggatagcaaacatt 213  Q
    |||| |||||||||| ||||||||| ||||  ||| ||||||||||||||| | |||||||  ||||| || | ||| ||||||||    
T  28643175 tgatttgtctgttacacttgccactccaactgcattgttggccttccacgctgacagggactcaattgtatagaataacaaacatt 28643260  T

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