View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14403_high_20 (Length: 243)
Name: NF14403_high_20
Description: NF14403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14403_high_20 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 30133539 - 30133311
Alignment:
| Q |
15 |
aatatacagctggatcgctcgctcgagccgaggcaagatatagagctgcattgcatgctcaagctcaggaaacaaaaagagctgaattgttctttcaagc |
114 |
Q |
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| T |
30133539 |
aatatacagcgggatcgctcgctcgagccgaggcaagatacagagctgcattgcatgctcaagctcaggaaacaaaaagagctgaattgttctttcaagc |
30133440 |
T |
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| Q |
115 |
tcaggtaagaaaaatagcagtattgctggctcaagctcaggtaatggatgaagctcttactatatataagaatgtaagtaagagcttgacgtgtggttga |
214 |
Q |
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| T |
30133439 |
tcaggtaagaaaaatagcagaattgctggctcaagctcaggtaatggatgaagctcttactatatataagaatgtaagtaagagcttgacgtgtggttga |
30133340 |
T |
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| Q |
215 |
aggtttacttttggactaaaataattttt |
243 |
Q |
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| T |
30133339 |
aggtttacttttggactaaaataattttt |
30133311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 39 - 188
Target Start/End: Complemental strand, 29939443 - 29939294
Alignment:
| Q |
39 |
gagccgaggcaagatatagagctgcattgcatgctcaagctcaggaaacaaaaagagctgaattgttctttcaagctcaggtaagaaaaatagcagtatt |
138 |
Q |
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|||||||||||| ||||||||||| |||||| ||||||| |||||| ||||||||||||| |||| |||||||||||||||||||||| ||||| ||| |
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| T |
29939443 |
gagccgaggcaaaatatagagctgtattgcaatgtcaagctgaggaaaaaaaaagagctgaaatgttatttcaagctcaggtaagaaaaagagcagaatt |
29939344 |
T |
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| Q |
139 |
gctggctcaagctcaggtaatggatgaagctcttactatatataagaatg |
188 |
Q |
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| T |
29939343 |
gctcgctcaagctcaagtaatggatgaagctcttgctatatataagaatg |
29939294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 30124716 - 30124809
Alignment:
| Q |
143 |
gctcaagctcaggtaatggatgaagctcttactatatataagaatgtaagtaagagcttgacgtgtggttgaaggtttacttttggactaaaataatt |
240 |
Q |
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| T |
30124716 |
gctcaagctcaggtaatggatgaagcgcttactatatataagaat----gtaagatcttgacatggggttgaaggttttctttaggactacaataatt |
30124809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 21956485 - 21956414
Alignment:
| Q |
121 |
aagaaaaatagcagtattgctggctcaagctcaggtaatggatgaagctcttactatatataagaatgtaag |
192 |
Q |
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| T |
21956485 |
aagaaaacgagcagaattactggctcaagctcaggtaatggatgaagctcttactatatataagactgtaag |
21956414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 907928 - 907999
Alignment:
| Q |
121 |
aagaaaaatagcagtattgctggctcaagctcaggtaatggatgaagctcttactatatataagaatgtaag |
192 |
Q |
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| T |
907928 |
aagaaaacgagcagaattactggctcaagctcaggtgatggatgaagctcttactatatataagaatgtaag |
907999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 8514911 - 8514861
Alignment:
| Q |
137 |
ttgctggctcaagctcaggtaatggatgaagctcttactatatataagaat |
187 |
Q |
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| T |
8514911 |
ttgcttgctcaagctcatataatggaagaagctcttactatatataagaat |
8514861 |
T |
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