View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14403_high_21 (Length: 236)
Name: NF14403_high_21
Description: NF14403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14403_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 13887235 - 13887174
Alignment:
| Q |
159 |
taaaaactgcattgaaagaaggagtttgaagacacattgaacacttgcatatgccagatatt |
220 |
Q |
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| T |
13887235 |
taaaaactgcattgaaagaaggagtttgaagacacgttgaacacttgcatatgccagatatt |
13887174 |
T |
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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 13887448 - 13887395
Alignment:
| Q |
17 |
aactatatcatgaaaagcaaggaaaacatctaatgaatgtaattctatccactgag |
72 |
Q |
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| T |
13887448 |
aactatatcatgaaaagccaagaa--catctaatgaatgtaattctatccactgag |
13887395 |
T |
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