View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14403_high_3 (Length: 565)

Name: NF14403_high_3
Description: NF14403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14403_high_3
NF14403_high_3
[»] chr2 (5 HSPs)
chr2 (11-548)||(5726598-5727144)
chr2 (157-275)||(26618212-26618334)
chr2 (236-304)||(11804919-11804987)
chr2 (249-305)||(34233636-34233692)
chr2 (236-304)||(35204261-35204329)
[»] chr1 (5 HSPs)
chr1 (153-313)||(15470871-15471035)
chr1 (148-304)||(21761101-21761260)
chr1 (148-209)||(26088763-26088824)
chr1 (219-303)||(26088618-26088706)
chr1 (236-306)||(22923599-22923669)
[»] chr7 (4 HSPs)
chr7 (156-228)||(7414749-7414821)
chr7 (236-299)||(48582108-48582171)
chr7 (195-303)||(31266696-31266807)
chr7 (153-209)||(31266820-31266876)
[»] chr8 (2 HSPs)
chr8 (152-304)||(9944463-9944619)
chr8 (246-283)||(30202034-30202071)
[»] chr5 (2 HSPs)
chr5 (153-236)||(15798823-15798905)
chr5 (246-303)||(28717348-28717405)
[»] chr3 (1 HSPs)
chr3 (248-303)||(1639458-1639513)
[»] chr4 (1 HSPs)
chr4 (153-211)||(42420450-42420508)
[»] chr6 (1 HSPs)
chr6 (249-305)||(864325-864381)


Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 11 - 548
Target Start/End: Complemental strand, 5727144 - 5726598
Alignment:
Q  11 agcaaaggacaaatgactaaacatgaatatttgtctctcactacccataaaaataaatctcaaatcgttcactaaactatgaaaacctttttattcgaag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5727144 agcaaaggacaaatgactaaacatgaatatttgtctctcactacccataaaaataaatctcaaatcgttcactaaactatgaaaacctttttattcgaag 5727045  T
Q  111 tacaaattatcaaaa---------cactctttttatcgagaaaataatgaaaaatgaggaaatgaggttatgtctgacctttaaaaagacacgcagcgta 201  Q
    |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  5727044 tacaaattatcaaaaatatcaaaacactctttttatcgagaaaataatgaaaaatgaggaaatgaggttatgtatgacctttaaaatgacacgcagcgta 5726945  T
Q  202 agttaactcatgcaagattaacacatgcatgagttcacgccagaggcatttttggaagtttggttgtgagtgagtaaaacttgttggaagaagagcattt 301  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5726944 agttaactcacgcaagattaacacatgcatgagttcacgccagaggcattttcggaagtttggttgtgagtgagtaaaacttgttggaagaagagcattt 5726845  T
Q  302 ttcaatttttgcaagatcatttgggctgatgggcaaattgatacatggatacgagaaaggtcgttggtcattggaactaacccaataaaacgttaaaacc 401  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5726844 ttcaatttttgcaatatcatttgggctgatgggcaaattgatatatggatacgagaaaggtcgttggtcattggaactaacccaataaaacgttaaaacc 5726745  T
Q  402 accacc-ttcctgtattttctcactaaaaatgttttttatttctgaccggannnnnnnnaattcttaatacccaaattaatccttgnnnnnnnnnccaac 500  Q
    ||| || ||||| ||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||         |||||    
T  5726744 acccccattcctttattttctcactaaaaatgttttttatttctgaccggattttttttaattcttaatacccaaattaatccttg-ttttttttccaac 5726646  T
Q  501 atacaaaaacccttcggaaaaagaagatattaattggtatttctctct 548  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5726645 atacacaaacccttcggaaaaagaagatattaattggtatttctctct 5726598  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 275
Target Start/End: Original strand, 26618212 - 26618334
Alignment:
Q  157 gaggaaatgaggttatgtctgacctttaaaaagacacgcagcgtaagttaactcatgcaagattaacacatgcatgagt----tcacgccagaggcattt 252  Q
    ||||||||||||||||||||||||||||||| |||||| || || ||||||||||  |  | ||||||||||| |||||    ||||||||| |||||||    
T  26618212 gaggaaatgaggttatgtctgacctttaaaaggacacgtagtgtgagttaactcacactggtttaacacatgcgtgagttaactcacgccaggggcattt 26618311  T
Q  253 ttggaagtttggttgtgagtgag 275  Q
    |  |||||||||||| |||||||    
T  26618312 tcagaagtttggttgggagtgag 26618334  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 11804987 - 11804919
Alignment:
Q  236 tcacgccagaggcatttttggaagtttggttgtgagtgagtaaaacttgttggaagaagagcatttttc 304  Q
    |||||| || || ||||| | ||||||||||  |||| ||||||||||| ||| |||||||||||||||    
T  11804987 tcacgctaggggtattttcgaaagtttggttaggagtaagtaaaacttgctgggagaagagcatttttc 11804919  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 34233636 - 34233692
Alignment:
Q  249 atttttggaagtttggttgtgagtgagtaaaacttgttggaagaagagcatttttca 305  Q
    ||||| |||||||||||||  |||||| ||||| || ||||||||||| ||||||||    
T  34233636 attttgggaagtttggttggaagtgagcaaaacgtgatggaagaagagaatttttca 34233692  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 35204329 - 35204261
Alignment:
Q  236 tcacgccagaggcatttttggaagtttggttgtgagtgagtaaaacttgttggaagaagagcatttttc 304  Q
    ||||| |||||  ||||||||||||||| ||  ||||||| ||| |||||||| |||| ||||||||||    
T  35204329 tcacgtcagagatatttttggaagtttgatttggagtgagcaaatcttgttgggagaaaagcatttttc 35204261  T

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Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 153 - 313
Target Start/End: Complemental strand, 15471035 - 15470871
Alignment:
Q  153 aaatgaggaaatgaggttatgtctgacctttaaaaagacacgcagcgtaagttaactcatgcaagattaacacatgcatgagt----tcacgccagaggc 248  Q
    ||||||||||||||| |||||||||| |||||||| || ||||| ||| |||||||||| ||  | ||||||||||| |||||    |||||| || ||     
T  15471035 aaatgaggaaatgagcttatgtctgagctttaaaaggatacgcaacgtgagttaactcacgctggtttaacacatgcgtgagttaactcacgctaggggt 15470936  T
Q  249 atttttggaagtttggttgtgagtgagtaaaacttgttggaagaagagcatttttcaatttttgc 313  Q
    ||||| | ||||||||||| || | || |||||||||||| |||||||||||||||  |||||||    
T  15470935 attttcgaaagtttggttgggaataagcaaaacttgttgggagaagagcatttttctttttttgc 15470871  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 148 - 304
Target Start/End: Original strand, 21761101 - 21761260
Alignment:
Q  148 atgaaaaatgaggaaatgaggttatgtctgacctttaaaaagacacgcagcgtaagttaactcatgcaagattaacacatgcatgagtt----cacgcca 243  Q
    |||| ||||||||||||||| |  ||| ||| |||||||| ||||||||  || |||||||||| ||  | ||||||||||| ||||||    |||||      
T  21761101 atgagaaatgaggaaatgagttgctgt-tgagctttaaaaggacacgcaatgtgagttaactcacgctggtttaacacatgcgtgagttaactcacgctg 21761199  T
Q  244 gaggcatttttggaagtttggttgtgagtgagtaaaacttgttggaagaagagcatttttc 304  Q
    | ||||||||| ||||||||| ||| |||||  ||||||||||||||||||||||||||||    
T  21761200 ggggcatttttagaagtttggctgtaagtgaacaaaacttgttggaagaagagcatttttc 21761260  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 26088824 - 26088763
Alignment:
Q  148 atgaaaaatgaggaaatgaggttatgtctgacctttaaaaagacacgcagcgtaagttaact 209  Q
    |||| ||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  26088824 atgagaaatgagaaaatgaggttatgtctgacctttaaaaggacacgcagcgtgagttaact 26088763  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 26088706 - 26088618
Alignment:
Q  219 ttaacacatgcatgagtt----cacgccagaggcatttttggaagtttggttgtgagtgagtaaaacttgttggaagaagagcattttt 303  Q
    ||||||||||||||||||    ||| |||  |||||||| ||||||||| ||| || |||| |||||||||||| ||||||| ||||||    
T  26088706 ttaacacatgcatgagttaactcacaccatgggcattttcggaagtttgattgggaatgagcaaaacttgttgggagaagagtattttt 26088618  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 22923599 - 22923669
Alignment:
Q  236 tcacgccagaggcatttttggaagtttggttgtgagtgagtaaaacttgttggaagaagagcatttttcaa 306  Q
    |||||| || |||||||| | ||||||||||| || |||  |||||||||||| |||| ||||||||||||    
T  22923599 tcacgcaaggggcattttcgaaagtttggttgagaatgaacaaaacttgttgggagaatagcatttttcaa 22923669  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 7414749 - 7414821
Alignment:
Q  156 tgaggaaatgaggttatgtctgacctttaaaaagacacgcagcgtaagttaactcatgcaagattaacacatg 228  Q
    ||||||||||||||| | | || |||||||||||||||||||||| |||||||||| |||  |||||||||||    
T  7414749 tgaggaaatgaggttctatttggcctttaaaaagacacgcagcgtgagttaactcacgcagaattaacacatg 7414821  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 48582171 - 48582108
Alignment:
Q  236 tcacgccagaggcatttttggaagtttggttgtgagtgagtaaaacttgttggaagaagagcat 299  Q
    ||||| ||| || ||||||||||||||||||| ||||||| ||| ||| |||||||||||||||    
T  48582171 tcacgtcagtggtatttttggaagtttggttgggagtgagcaaatcttattggaagaagagcat 48582108  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 303
Target Start/End: Complemental strand, 31266807 - 31266696
Alignment:
Q  195 cagcgtaagttaactcatgcaagattaacacatgcatgagtt----cacgccagaggcatttttggaagtttggttgtgagtgagtaaaacttgttggaa 290  Q
    |||||| | |||| ||| ||| ||||||||||||| ||||||    |||||||  |||||||| | ||||||||||| | ||||||||||||| |||| |    
T  31266807 cagcgtgacttaattcacgcaggattaacacatgcgtgagttaactcacgccaatggcattttcgaaagtttggttgagtgtgagtaaaacttattggga 31266708  T
Q  291 gaagagcattttt 303  Q
    ||| |||||||||    
T  31266707 gaa-agcattttt 31266696  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 31266876 - 31266820
Alignment:
Q  153 aaatgaggaaatgaggttatgtctgacctttaaaaagacacgcagcgtaagttaact 209  Q
    |||||||||||||| ||| |||||||| ||||||| ||||| ||| || ||||||||    
T  31266876 aaatgaggaaatgaagttttgtctgacttttaaaaggacacacagtgtgagttaact 31266820  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 304
Target Start/End: Complemental strand, 9944619 - 9944463
Alignment:
Q  152 aaaatgaggaaatgaggttatgtctgacctttaaaaagacacgcagcgtaagttaactcatgcaagattaacacatgcatgagtt----cacgccagagg 247  Q
    |||||||| |||||||||| || ||| |||| ||||  ||||||||||| || ||||||  ||| ||||||||||||  ||||||    |||| ||| ||    
T  9944619 aaaatgagaaaatgaggttctgcctggccttgaaaacaacacgcagcgtgagctaactcgcgcaggattaacacatgtgtgagttaacccacgtcagggg 9944520  T
Q  248 catttttggaagtttggttgtgagtgagtaaaacttgttggaagaagagcatttttc 304  Q
    | |||| | |||||||||||  | |||| |||||||||||  |||||||| ||||||    
T  9944519 ctttttcgaaagtttggttggaaatgagcaaaacttgttgagagaagagcttttttc 9944463  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 30202034 - 30202071
Alignment:
Q  246 ggcatttttggaagtttggttgtgagtgagtaaaactt 283  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  30202034 ggcatttttggaagtttggttgggagtgagcaaaactt 30202071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 236
Target Start/End: Original strand, 15798823 - 15798905
Alignment:
Q  153 aaatgaggaaatgaggttatgtctgacctttaaaaagacacgcagcgtaagttaactcatgcaagattaacacatgcatgagtt 236  Q
    |||||||||||| |||||||||||| |||||||||  ||||||| ||| |||||| ||| |||| ||||||||  |||||||||    
T  15798823 aaatgaggaaataaggttatgtctg-cctttaaaataacacgcaacgtgagttaagtcacgcaaaattaacactagcatgagtt 15798905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 28717405 - 28717348
Alignment:
Q  246 ggcatttttggaagtttggttgtgagtgagtaaaacttgttggaagaagagcattttt 303  Q
    |||| ||||| ||||||||||| ||||||| |||||||||||| |||||| |||||||    
T  28717405 ggcacttttgaaagtttggttgggagtgagcaaaacttgttgggagaagatcattttt 28717348  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 1639458 - 1639513
Alignment:
Q  248 catttttggaagtttggttgtgagtgagtaaaacttgttggaagaagagcattttt 303  Q
    ||||||||||||||| ||||    ||||||||||||||||||||||||||||||||    
T  1639458 catttttggaagtttagttggatctgagtaaaacttgttggaagaagagcattttt 1639513  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 42420508 - 42420450
Alignment:
Q  153 aaatgaggaaatgaggttatgtctgacctttaaaaagacacgcagcgtaagttaactca 211  Q
    ||||||| ||||  |||| |||||||||||||||| |||||||||||| ||||||||||    
T  42420508 aaatgagaaaatagggttctgtctgacctttaaaacgacacgcagcgtgagttaactca 42420450  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 864381 - 864325
Alignment:
Q  249 atttttggaagtttggttgtgagtgagtaaaacttgttggaagaagagcatttttca 305  Q
    ||||||| ||||||| ||| ||||||  ||| |||||||| ||||||||||||||||    
T  864381 atttttgaaagtttgattgggagtgaacaaatcttgttgggagaagagcatttttca 864325  T

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