View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14403_high_9 (Length: 433)
Name: NF14403_high_9
Description: NF14403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14403_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 2047101 - 2046709
Alignment:
| Q |
18 |
gatttttgtttttctcttttcagtatggtacataattactaacaatttctgaaaatatacacacaaaacttacctgcaaaagatcaccaacattaactat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2047101 |
gatttttgtttttctcttttcagtatggtacataattactaacaatttctgaaaatatacacacaaaacttacctgcagaagatcaccaacattaactat |
2047002 |
T |
|
| Q |
118 |
gagagatccaggtacaggtgctatatcaatccatttatcttcataaagaacttggagaccacctatatggtcttgtagaagcactgtgagaaaaccactg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2047001 |
gagagatccaggtacaggtgctatatcaatccatttatcttcataaagaacttggagaccacctatatggtcttgtagaagcactgt------------- |
2046915 |
T |
|
| Q |
218 |
tcagaatgcttggttgttcccacagtcaattctggttcaggacaaggaggataataatggcaaagagcaaatagcccttgagtacaatccatatctttta |
317 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2046914 |
-cagaatacttggttgttcccacagtcaattctggttcaggacaaggaggataataatggcaaagagcaaataacccttgagtacaatccatatctttta |
2046816 |
T |
|
| Q |
318 |
gatgatttggatgcaaacctaaagcttcagataacaattcaaacaataaagtccctagattcatcatgtgttttccatattctagtattatatctctgca |
417 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2046815 |
gatgatttggatgcaaacctaaatcttcagataacaattcaaacaataaagtccctagattcatcatgtgttttccatattctagtattatatctctgca |
2046716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 82 - 422
Target Start/End: Complemental strand, 2029675 - 2029335
Alignment:
| Q |
82 |
aaaacttacctgcaaaagatcaccaacattaactatgagagatccaggtacaggtgctatatcaatccatttatcttcataaagaacttggagaccacct |
181 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2029675 |
aaaacttgcctgcaaaagatcaccaacattaactacgagagctccaggtacaggtgttatatcaatccatttatcttcataaagaacttggaggccacca |
2029576 |
T |
|
| Q |
182 |
atatggtcttgtagaagcactgtgagaaaaccactgtcagaatgcttggttgttcccacagtcaattctggttcaggacaaggaggataataatggcaaa |
281 |
Q |
| |
|
||||||||||| |||||||||||||| ||| || ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2029575 |
atatggtcttggagaagcactgtgaggaaatcattgtcacaatgctttgttgttcccacagtcaattctggttcaggacaaggaggataataatggcaaa |
2029476 |
T |
|
| Q |
282 |
gagcaaatagcccttgagtacaatccatatcttttagatgatttggatgcaaacctaaagcttcagataacaattcaaacaataaagtccctagattcat |
381 |
Q |
| |
|
|||||| |||||||| | |||| |||||||||||||||| ||||||| |||||||||||||| || ||||||||||||| ||||| ||||||||||| |
|
|
| T |
2029475 |
gagcaattagcccttcggcacaacccatatcttttagatggtttggattcaaacctaaagcttgtgacaacaattcaaacagcaaagttcctagattcat |
2029376 |
T |
|
| Q |
382 |
catgtgttttccatattctagtattatatctctgcaagaat |
422 |
Q |
| |
|
|| ||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
2029375 |
cacctgtttcccatattctagtagtatatctctgcaagaat |
2029335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 76 - 418
Target Start/End: Complemental strand, 2037804 - 2037462
Alignment:
| Q |
76 |
acacacaaaacttacctgcaaaagatcaccaacattaactatgagagatccaggtacaggtgctatatcaatccatttatcttcataaagaacttggaga |
175 |
Q |
| |
|
||||| ||||||| |||||| ||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2037804 |
acacagaaaacttgcctgcagaagatcaccaatattaactatgagagctccagatacaggtgttatatcaatccatttatcttcataaagaacttggaga |
2037705 |
T |
|
| Q |
176 |
ccacctatatggtcttgtagaagcactgtgagaaaaccactgtcagaatgcttggttgttcccacagtcaattctggttcaggacaaggaggataataat |
275 |
Q |
| |
|
||||| ||||||||||| | ||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
2037704 |
ccaccaatatggtcttggataagcactgtgagaaaaccatggtctgaatgcttggctgttcccacagtcaattctggttccggacaagaaggataataat |
2037605 |
T |
|
| Q |
276 |
ggcaaagagcaaatagcccttgagtacaatccatatcttttagatgatttggatgcaaacctaaagcttcagataacaattcaaacaataaagtccctag |
375 |
Q |
| |
|
|||||||||||||||| |||| || ||||||||||||||||||||| ||||||| || |||||||||||| |||||||||| ||||| ||| |||||||| |
|
|
| T |
2037604 |
ggcaaagagcaaatagtcctttagcacaatccatatcttttagatggtttggattcagacctaaagcttctgataacaattaaaacagtaaggtccctag |
2037505 |
T |
|
| Q |
376 |
attcatcatgtgttttccatattctagtattatatctctgcaa |
418 |
Q |
| |
|
||| |||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
2037504 |
atttgtcatgtgttttccatattctagaagtatatctctgcaa |
2037462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 82 - 424
Target Start/End: Complemental strand, 2050966 - 2050624
Alignment:
| Q |
82 |
aaaacttacctgcaaaagatcaccaacattaactatgagagatccaggtacaggtgctatatcaatccatttatcttcataaagaacttggagaccacct |
181 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2050966 |
aaaacttgcctgcaaaagatcaccaacattaactatgagagctccagatacaggtgttatatcaatccatttatcttcataaagaacttggaggccacca |
2050867 |
T |
|
| Q |
182 |
atatggtcttgtagaagcactgtgagaaaaccactgtcagaatgcttggttgttcccacagtcaattctggttcaggacaaggaggataataatggcaaa |
281 |
Q |
| |
|
||||||||||| |||||||||||||| ||| || | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2050866 |
atatggtcttgaagaagcactgtgaggaaatcattatcagaatgctttgttgttccgacagtcaattctggttcaggacaaggaggataataatggcaaa |
2050767 |
T |
|
| Q |
282 |
gagcaaatagcccttgagtacaatccatatcttttagatgatttggatgcaaacctaaagcttcagataacaattcaaacaataaagtccctagattcat |
381 |
Q |
| |
|
|||||| |||||||| || |||| |||||||||||||||| ||||||| || ||||||||||| || | ||||||||| | |||||| ||||||||||| |
|
|
| T |
2050766 |
gagcaattagcccttcagcacaacccatatcttttagatggtttggattcagtcctaaagcttctgacatcaattcaaatagtaaagttcctagattcat |
2050667 |
T |
|
| Q |
382 |
catgtgttttccatattctagtattatatctctgcaagaataa |
424 |
Q |
| |
|
|| ||||| |||||||||||||||| ||||||| |||||||| |
|
|
| T |
2050666 |
cacctgtttcccatattctagtattacatctctgtaagaataa |
2050624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 82 - 421
Target Start/End: Complemental strand, 2058199 - 2057860
Alignment:
| Q |
82 |
aaaacttacctgcaaaagatcaccaacattaactatgagagatccaggtacaggtgctatatcaatccatttatcttcataaagaacttggagaccacct |
181 |
Q |
| |
|
||||||| |||| | |||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2058199 |
aaaacttgcctgaagaagatcaccaacattaactaggagagctccaggtacaggtgttatatcaatccatttatcttcataaagaacttggagaccacca |
2058100 |
T |
|
| Q |
182 |
atatggtcttgtagaagcactgtgagaaaaccactgtcagaatgcttggttgttcccacagtcaattctggttcaggacaaggaggataataatggcaaa |
281 |
Q |
| |
|
||||||||||||||||||| ||| || ||| || | |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| |||| |
|
|
| T |
2058099 |
atatggtcttgtagaagcattgtcaggaaatcattatcagaatgcttggttgttcccacagtcaattctggttcgggataagaaggataataatgacaaa |
2058000 |
T |
|
| Q |
282 |
gagcaaatagcccttgagtacaatccatatcttttagatgatttggatgcaaacctaaagcttcagataacaattcaaacaataaagtccctagattcat |
381 |
Q |
| |
|
|||||| |||||||| || |||| |||||||||||||||| ||||||| ||||||||||||||| || ||||||||||||| |||||| ||||||||||| |
|
|
| T |
2057999 |
gagcaattagcccttcagcacaacccatatcttttagatggtttggattcaaacctaaagcttctgacaacaattcaaacagtaaagttcctagattcat |
2057900 |
T |
|
| Q |
382 |
catgtgttttccatattctagtattatatctctgcaagaa |
421 |
Q |
| |
|
|| ||||| ||||||| |||||| | ||||||||||||| |
|
|
| T |
2057899 |
cacttgtttcccatattatagtatcacatctctgcaagaa |
2057860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 82 - 424
Target Start/End: Original strand, 1948480 - 1948822
Alignment:
| Q |
82 |
aaaacttacctgcaaaagatcaccaacattaactatgagagatccaggtacaggtgctatatcaatccatttatcttcataaagaacttggagaccacct |
181 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1948480 |
aaaacttgcctgcaaaagatcaccaatattaactatgagagctccagttgcaggtgttatatcaatccatttatcttcataaagaacttggagaccacca |
1948579 |
T |
|
| Q |
182 |
atatggtcttgtagaagcactgtgagaaaaccactgtcagaatgcttggttgttcccacagtcaattctggttcaggacaaggaggataataatggcaaa |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| |||||||| |||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1948580 |
atatggtcttgtagaagcactgtgagaaaactatggtctgaatgcttagttgttcccatagtcagttctggttcaggacaagaaggataataatggcaaa |
1948679 |
T |
|
| Q |
282 |
gagcaaatagcccttgagtacaatccatatcttttagatgatttggatgcaaacctaaagcttcagataacaattcaaacaataaagtccctagattcat |
381 |
Q |
| |
|
||||| ||||||| ||||||| |||||||||||||||| ||||| | ||||||||| ||||| || || ||||||||||| | ||||||||||||||| |
|
|
| T |
1948680 |
cagcaatcagcccttcagtacaacccatatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagtccctagattcat |
1948779 |
T |
|
| Q |
382 |
catgtgttttccatattctagtattatatctctgcaagaataa |
424 |
Q |
| |
|
|| |||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
1948780 |
cacgtgtttcccatattctagggttatatctctgtaagaataa |
1948822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 82 - 418
Target Start/End: Complemental strand, 2055375 - 2055039
Alignment:
| Q |
82 |
aaaacttacctgcaaaagatcaccaacattaactatgagagatccaggtacaggtgctatatcaatccatttatcttcataaagaacttggagaccacct |
181 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
2055375 |
aaaacttgcctgcaaaagatcaccaacattaactattagagctccagatacaggtgttatatcaatccatttatcgtcataaagaacttggaggccacca |
2055276 |
T |
|
| Q |
182 |
atatggtcttgtagaagcactgtgagaaaaccactgtcagaatgcttggttgttcccacagtcaattctggttcaggacaaggaggataataatggcaaa |
281 |
Q |
| |
|
||||||||||| |||||||||||||| ||| || | ||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
2055275 |
atatggtcttgaagaagcactgtgaggaaatcattatcagaatgctttgttgttccgacagtcaattctggttcaggacaaggagggtagtaatggcaaa |
2055176 |
T |
|
| Q |
282 |
gagcaaatagcccttgagtacaatccatatcttttagatgatttggatgcaaacctaaagcttcagataacaattcaaacaataaagtccctagattcat |
381 |
Q |
| |
|
|||||| ||||||| || ||||||||||||||| | ||| ||||||| ||||||||| ||||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
2055175 |
gagcaatcagcccttcagcacaatccatatctttcaaatggtttggattcaaacctaatgcttctgacaacaattcaaataataaagtccctagattcat |
2055076 |
T |
|
| Q |
382 |
catgtgttttccatattctagtattatatctctgcaa |
418 |
Q |
| |
|
||||||||| |||||| ||| | ||||||||||||| |
|
|
| T |
2055075 |
catgtgtttcccatatcgtagcagtatatctctgcaa |
2055039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 82 - 424
Target Start/End: Complemental strand, 2034234 - 2033892
Alignment:
| Q |
82 |
aaaacttacctgcaaaagatcaccaacattaactatgagagatccaggtacaggtgctatatcaatccatttatcttcataaagaacttggagaccacct |
181 |
Q |
| |
|
||||||| |||||| ||||||||| |||| ||| ||||||| |||||||||||||| ||||||||||||||| || ||||| |||||||| |||||||| |
|
|
| T |
2034234 |
aaaacttgcctgcagaagatcaccgacatcaacaatgagagctccaggtacaggtgttatatcaatccatttgtcgtcatacagaacttgaagaccacca |
2034135 |
T |
|
| Q |
182 |
atatggtcttgtagaagcactgtgagaaaaccactgtcagaatgcttggttgttcccacagtcaattctggttcaggacaaggaggataataatggcaaa |
281 |
Q |
| |
|
| |||||||||||||||||||||||| ||| || | ||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
2034134 |
acatggtcttgtagaagcactgtgaggaaatcattatcagaatgctttgttgttcctacagtcaattctggttcaggacaaggagggtagtaatggcaaa |
2034035 |
T |
|
| Q |
282 |
gagcaaatagcccttgagtacaatccatatcttttagatgatttggatgcaaacctaaagcttcagataacaattcaaacaataaagtccctagattcat |
381 |
Q |
| |
|
|||||| ||||||| || ||||||||||||||| | ||| ||||||| ||||||||| ||||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
2034034 |
gagcaatcagcccttcagcacaatccatatctttcaaatggtttggattcaaacctaatgcttctgacaacaattcaaataataaagtccctagattcat |
2033935 |
T |
|
| Q |
382 |
catgtgttttccatattctagtattatatctctgcaagaataa |
424 |
Q |
| |
|
||||| ||| ||||||| || | ||||||||||||||||||| |
|
|
| T |
2033934 |
catgtatttcccatattgtaacagtatatctctgcaagaataa |
2033892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 82 - 418
Target Start/End: Complemental strand, 10768699 - 10768363
Alignment:
| Q |
82 |
aaaacttacctgcaaaagatcaccaacattaactatgagagatccaggtacaggtgctatatcaatccatttatcttcataaagaacttggagaccacct |
181 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||| | ||||||||||||||| ||||| |
|
|
| T |
10768699 |
aaaacttgcctgcaaaagatctccaacattaactatgagagccccaggaacaggtgtaatatcaatccatttatcctgataaagaacttggaggccacca |
10768600 |
T |
|
| Q |
182 |
atatggtcttgtagaagcactgtgagaaaaccactgtcagaatgcttggttgttcccacagtcaattctggttcaggacaaggaggataataatggcaaa |
281 |
Q |
| |
|
||||||||||| |||||||| ||||| ||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
10768599 |
atatggtcttggagaagcacagtgaggaaatcattatcagaatgcttggttgttcccacagtcaattctggttcaggacaaggaggataataatgaccga |
10768500 |
T |
|
| Q |
282 |
gagcaaatagcccttgagtacaatccatatcttttagatgatttggatgcaaacctaaagcttcagataacaattcaaacaataaagtccctagattcat |
381 |
Q |
| |
|
|||||| || |||| || |||||| |||||||||||||| ||||||| || |||||||||||| || | | ||||||||||||||||||||| || | |
|
|
| T |
10768499 |
gagcaagtaatccttcagcacaatcaatatcttttagatggtttggattcagacctaaagcttctgagcatagttcaaacaataaagtccctaggtttct |
10768400 |
T |
|
| Q |
382 |
catgtgttttccatattctagtattatatctctgcaa |
418 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
10768399 |
catgtgttttccatattctagcaatatatctctgcaa |
10768363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 281
Target Start/End: Complemental strand, 2023056 - 2022900
Alignment:
| Q |
125 |
ccaggtacaggtgctatatcaatccatttatcttcataaagaacttggagaccacctatatggtcttgtagaagcactgtgagaaaaccactgtcagaat |
224 |
Q |
| |
|
||||| ||||||| || ||||| ||| ||| |||| |||||||||||| || || ||||| |||||||||||||| |||| ||| | | || | || |
|
|
| T |
2023056 |
ccaggaacaggtgatacatcaacccaactattttcacgaagaacttggaggccgccaatatgatcttgtagaagcacggtgataaagtcgttatccgtat |
2022957 |
T |
|
| Q |
225 |
gcttggttgttcccacagtcaattctggttcaggacaaggaggataataatggcaaa |
281 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| ||||| | |||||| |||||||||| |
|
|
| T |
2022956 |
gcttggttattcccaaagtcaattctggttctggacaggaaggatagtaatggcaaa |
2022900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 1094306 - 1094256
Alignment:
| Q |
148 |
ccatttatcttcataaagaacttggagaccacctatatggtcttgtagaag |
198 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| | |||||||||||||| |
|
|
| T |
1094306 |
ccatttatcttcatgaagaacttgtagaccaccaagttggtcttgtagaag |
1094256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 77 - 424
Target Start/End: Original strand, 48906771 - 48907118
Alignment:
| Q |
77 |
cacacaaaacttacctgcaaaagatcaccaacattaactatgagagatccaggtacaggtgctatatcaatccatttatcttcataaagaacttggagac |
176 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||||||||| |||||| ||| ||| |||| | ||||| ||||||||||| ||||||||||||||| | |
|
|
| T |
48906771 |
cacaaaaaacttgcctgcaaaaggtcaccaacattaactacgagagacccatgtataggtttcacatcaacccatttatcttgataaagaacttggaggc |
48906870 |
T |
|
| Q |
177 |
cacctatatggtcttgtagaagcactgtgagaaaaccactgtcagaatgcttggttgttcccacagtcaattctggttcaggacaaggaggataataatg |
276 |
Q |
| |
|
|||| ||||||||||| |||| ||| | || |||||| ||||||||||||| || |||||||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
48906871 |
caccaatatggtcttggagaaccaccgcaaggaaaccagtgtcagaatgcttttttagtcccacagtcaaatctggttcagggcatggaggataataatg |
48906970 |
T |
|
| Q |
277 |
gcaaagagcaaatagcccttgagtacaatccatatcttttagatgatttggatgcaaacctaaagcttcagataacaattcaaacaataaagtccctaga |
376 |
Q |
| |
|
|||| ||||| |||||||| | |||| |||||||||||||||| ||||||| || |||||||||||| || | ||||||||| | |||| || || |
|
|
| T |
48906971 |
gcaagcagcaattagcccttcaacacaacccatatcttttagatggtttggattcagacctaaagcttctgacagcaattcaaatagtaaaaatcccagg |
48907070 |
T |
|
| Q |
377 |
ttcatcatgtgttttccatattctagtattatatctctgcaagaataa |
424 |
Q |
| |
|
|||||||| ||||| | |||||||| | ||| ||||||||||||||| |
|
|
| T |
48907071 |
ttcatcatttgtttactatattctatcagtatgtctctgcaagaataa |
48907118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 84 - 276
Target Start/End: Original strand, 28735273 - 28735465
Alignment:
| Q |
84 |
aacttacctgcaaaagatcaccaacattaactatgagagatccaggtacaggtgctatatcaatccatttatcttcataaagaacttggagaccacctat |
183 |
Q |
| |
|
||||| |||||| ||||||||||| |||||| | |||| | ||||| |||| || ||| ||||| || |||| ||||||||||| |||||||| || |
|
|
| T |
28735273 |
aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtaaagaacttgaagaccaccaat |
28735372 |
T |
|
| Q |
184 |
atggtcttgtagaagcactgtgagaaaaccactgtcagaatgcttggttgttcccacagtcaattctggttcaggacaaggaggataataatg |
276 |
Q |
| |
|
||||||||| ||||||||||||||||||| || |||||||| ||||| ||||||| || || |||||||||||||||| |||||| ||||| |
|
|
| T |
28735373 |
atggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg |
28735465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 28742434 - 28742553
Alignment:
| Q |
163 |
aagaacttggagaccacctatatggtcttgtagaagcactgtgagaaaaccactgtcagaatgcttggttgttcccacagtcaattctggttcaggacaa |
262 |
Q |
| |
|
||||||||| || ||||| ||||||||||| |||||||||||||| |||| ||| |||||||| |||| ||||||| || || | ||||||||||||| |
|
|
| T |
28742434 |
aagaacttgaaggccaccaatatggtcttgaagaagcactgtgaggaaactactatcagaatgtttggcggttcccatcgttaaatgtggttcaggacaa |
28742533 |
T |
|
| Q |
263 |
ggaggataataatggcaaag |
282 |
Q |
| |
|
| |||||| ||||||||||| |
|
|
| T |
28742534 |
gcaggatagtaatggcaaag |
28742553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 28783446 - 28783534
Alignment:
| Q |
188 |
tcttgtagaagcactgtgagaaaaccactgtcagaatgcttggttgttcccacagtcaattctggttcaggacaaggaggataataatg |
276 |
Q |
| |
|
||||| ||||||| ||||||||||| ||| |||||||| || || ||||||| ||| ||||||||||||||||||| |||||| ||||| |
|
|
| T |
28783446 |
tcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaatg |
28783534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 276
Target Start/End: Original strand, 28700374 - 28700464
Alignment:
| Q |
186 |
ggtcttgtagaagcactgtgagaaaaccactgtcagaatgcttggttgttcccacagtcaattctggttcaggacaaggaggataataatg |
276 |
Q |
| |
|
||||||| ||||||||||||||||||| | |||||||| ||||| ||||||| || || |||||||||||||||| |||||| ||||| |
|
|
| T |
28700374 |
ggtcttggagaagcactgtgagaaaactaacatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg |
28700464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 17183303 - 17183384
Alignment:
| Q |
82 |
aaaacttacctgcaaaagatcaccaacattaactatgagagatccaggtacaggtgctatatcaatccatttatcttcataa |
163 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||| ||||| |||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
17183303 |
aaaacttgcctgcaaaagatcgccaacattaactatgagagctccagttacaggtgttatattaatccatttattttcataa |
17183384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 16439304 - 16439240
Alignment:
| Q |
142 |
atcaatccatttatcttcataaagaacttggagaccacctatatggtcttgtagaagcactgtga |
206 |
Q |
| |
|
||||||||| |||||| || ||||||||||||||||||| |||| |||||||||||||| |||| |
|
|
| T |
16439304 |
atcaatccacatatctttatgaagaacttggagaccacctgtatgatcttgtagaagcaccgtga |
16439240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 16425974 - 16426017
Alignment:
| Q |
163 |
aagaacttggagaccacctatatggtcttgtagaagcactgtga |
206 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
16425974 |
aagaacttggaggccacctatatgatcttgtagaagcactgtga |
16426017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 16442252 - 16442295
Alignment:
| Q |
163 |
aagaacttggagaccacctatatggtcttgtagaagcactgtga |
206 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
16442252 |
aagaacttggaggccacctatatgatcttgtagaagcactgtga |
16442295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 33771236 - 33771347
Alignment:
| Q |
87 |
ttacctgcaaaagatcaccaacattaactatgagagatccaggtacaggtgctatatcaatccatttatcttcataaagaacttggagaccacctatatg |
186 |
Q |
| |
|
||||||||| ||||||||||| ||| ||||| ||||||||| | || || | | ||||||||||| || || || ||||||||| ||||| || ||| | |
|
|
| T |
33771236 |
ttacctgcagaagatcaccaatatttactataagagatccatgcaccggaggaacatcaatccattgattttgatgaagaacttgaagaccgccaatacg |
33771335 |
T |
|
| Q |
187 |
gtcttgtagaag |
198 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33771336 |
gtcttgtagaag |
33771347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 29463943 - 29463893
Alignment:
| Q |
148 |
ccatttatcttcataaagaacttggagaccacctatatggtcttgtagaag |
198 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| | |||||||||||||| |
|
|
| T |
29463943 |
ccatttatcttcatgaagaacttgaagaccaccaagttggtcttgtagaag |
29463893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University