View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14403_low_1 (Length: 709)
Name: NF14403_low_1
Description: NF14403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14403_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 535
Target Start/End: Original strand, 21826640 - 21827164
Alignment:
| Q |
6 |
agtgagatgaatgcaaatgaagtaaagaattcacaatcactcttatccttgtttagacat-aaacttatgttattctaagaacatgatttcatgctcaaa |
104 |
Q |
| |
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||||| ||||||||| | ||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || | ||||||||||||||| |
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| T |
21826640 |
agtgacatgaatgcagagtaagtaaaaaattcacaatcactcatatccttgtttagacattaaactaatgttattctactaatacgatttcatgctcaaa |
21826739 |
T |
|
| Q |
105 |
taaccaaaccttaaaagcaagtggttgatattgaacacctagcaagaatatcct--------tgcataccaactaaagccaatcagcctttaaaccacaa |
196 |
Q |
| |
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||||||||||||||| |||| ||| |||||||| |||||| ||||||| |||||||||||||||| || |||||||| ||| ||||| |
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| T |
21826740 |
taaccaaaccttaaat--aagtagttcatattgaatacctaggtgtgatatcctattatccttgcataccaactaaagtcagtcagccttcaaaacacaa |
21826837 |
T |
|
| Q |
197 |
tatcctacacataacagagacagccttcaaatcatgtttctaaagtgaatactagaggataaactcattgaaaaaataaataacatggattaaaatttag |
296 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||||||| ||||| || |||| | ||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
21826838 |
tatcctaca--taacaaagacaaccttcaaatcatgtt-ctaaatcaaacactaaacaataaacttattgaaaaaataaataacatggattcaaatttag |
21826934 |
T |
|
| Q |
297 |
aactagtatctcaccatttcagagacaattgtagtagatgaaatggaatgctattaaatcaatcaaagatataaaacttcaattaggtaaagatgctgaa |
396 |
Q |
| |
|
||||| |||||||| ||| ||||||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | |
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| T |
21826935 |
aactaacatctcacctttttagagacaattgtactagatgatatggaatgctattaaataaatcaaagatagaaaacttcaattaggtaaagatgctgca |
21827034 |
T |
|
| Q |
397 |
taaaacaaagaaaaggtgttaattgttattatctaaggtttctaaaaagtttaaatttagtatattgaataatggcccatgagggattcaatcgtaagtc |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| |
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| T |
21827035 |
taaaacaaagaaaaggtgttaattgttatta---------tctaaaaagtttaaatttagtatattgaataactggtcatgagggattcactcgtaagtc |
21827125 |
T |
|
| Q |
497 |
tcaacttcacaaaatacatgaatcttcaagttgggattc |
535 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| |||||| |
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|
| T |
21827126 |
tcaacttcacaaaatacataaatcttcatgtttggattc |
21827164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 6 - 421
Target Start/End: Original strand, 39602478 - 39602897
Alignment:
| Q |
6 |
agtgagatgaatgcaaatgaagtaaagaattcacaatcactcttatccttgtttagacat-aaacttatgttattctaagaacatgatttcatgctcaaa |
104 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
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|
| T |
39602478 |
agtgacatgaatgcaaaggaagtaaaaaattcacaatcactcatatccttgtttagacattaaactaatgttattctactaacatgatttcatgctcaaa |
39602577 |
T |
|
| Q |
105 |
taaccaaaccttaaaagcaagtggttgatattgaacacctagcaagaatatcct--------tgcataccaactaaagccaatcagcctttaaaccacaa |
196 |
Q |
| |
|
||| ||||||||||| ||||| |||||||||||| |||||| ||||||| |||||||||||||||| || |||||||| ||| ||||| |
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| T |
39602578 |
taatcaaaccttaaa--caagtagttgatattgaatacctaggtgtgatatcctattatccttgcataccaactaaagtcagtcagccttcaaaacacaa |
39602675 |
T |
|
| Q |
197 |
tatcctacacataacagagacagccttcaaatcatgtttctaaagtgaatactagaggataaactcattgaaaaaataaataacatggattaaaatttag |
296 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||||||| ||||| || |||| | ||||||| ||||||||||||||||||||||||| |||||||| |
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|
| T |
39602676 |
tatcctaca--taacaaagacaaccttcaaatcatgtt-ctaaatcaaacactaaacaataaacttattgaaaaaataaataacatggattcaaatttag |
39602772 |
T |
|
| Q |
297 |
aactagtatctcaccatttcagagacaattgtagtagatgaaatggaatgctattaaatcaatcaaagatataaaacttcaattaggtaaagatgctgaa |
396 |
Q |
| |
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||||| |||||||| ||| ||||||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | |
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|
| T |
39602773 |
aactaacatctcacctttttagagacaattgtactagatgatatggaatgctattaaataaatcaaagatagaaaacttcaattaggtaaagatgctgca |
39602872 |
T |
|
| Q |
397 |
taaaacaaagaaaaggtgttaattg |
421 |
Q |
| |
|
||||||||||||||||| ||||||| |
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|
| T |
39602873 |
taaaacaaagaaaaggtattaattg |
39602897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 623 - 686
Target Start/End: Original strand, 39602979 - 39603042
Alignment:
| Q |
623 |
taatcacttgacctagtgttgtctaaacacttgtatgcagaattttagtcacctaccctgctgc |
686 |
Q |
| |
|
|||||||||| | | ||||||||||| |||||||| ||||||||||| |||| ||||||||||| |
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| T |
39602979 |
taatcacttgccttggtgttgtctaatcacttgtaagcagaattttaatcacttaccctgctgc |
39603042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 415
Target Start/End: Complemental strand, 46974301 - 46974220
Alignment:
| Q |
334 |
atgaaatggaatgctattaaatcaatcaaagatataaaacttcaattaggtaaagatgctgaataaaacaaagaaaaggtgt |
415 |
Q |
| |
|
|||||| |||||||||||||||||| |||||| || ||||| || ||| ||| |||||||| || ||||| |||||| |||| |
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|
| T |
46974301 |
atgaaaaggaatgctattaaatcaaccaaagacatcaaactccagttaagtatagatgctgcatgaaacagagaaaaagtgt |
46974220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 206 - 347
Target Start/End: Complemental strand, 38414849 - 38414709
Alignment:
| Q |
206 |
cataacagagacagccttcaaatcatgtttctaaagtgaatactagaggataaactcattgaaaaaataaataacatggattaaaatttagaactagtat |
305 |
Q |
| |
|
||||||| |||||||||||||||||||||| | || |||||||| | ||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38414849 |
cataacaaagacagccttcaaatcatgttt-tgaatcgaatactaaacgataaacacattgaaaaaataaataacatggaataaaatttagaactagtag |
38414751 |
T |
|
| Q |
306 |
ctcaccatttcagagacaattgtagtagatgaaatggaatgc |
347 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||||| ||||||| |
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|
| T |
38414750 |
ctcaccttttctgagacaattgtactagatgaaaaggaatgc |
38414709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 243 - 358
Target Start/End: Complemental strand, 9010320 - 9010205
Alignment:
| Q |
243 |
gaatactagaggataaactcattgaaaaaataaataacatggattaaaatttagaactagtatctcaccatttcagagacaattgtagtagatgaaatgg |
342 |
Q |
| |
|
|||||||| | ||||||| |||||||||| |||||| ||||||||||||||||||| ||||| |||||| |||||||||||| | || ||||||||| || |
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|
| T |
9010320 |
gaatactaaacgataaacacattgaaaaattaaatatcatggattaaaatttagaagtagtagctcaccttttcagagacaactatactagatgaaaagg |
9010221 |
T |
|
| Q |
343 |
aatgctattaaatcaa |
358 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
9010220 |
tatgcaattaaatcaa |
9010205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 9010203 - 9010143
Alignment:
| Q |
384 |
taaagatgctgaataaaacaaagaaaaggtgttaattgttattatctaaggtttctaaaaa |
444 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
9010203 |
taaagatgctgcataaaacaaagaaaaggtgttgattgttattatctaaggtttctaaaaa |
9010143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 9010531 - 9010472
Alignment:
| Q |
67 |
aacttatgttattctaagaacatgatttcatgctcaaataaccaaaccttaaaagcaagt |
126 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9010531 |
aacttatgttattccaataacatgattgcatgctcaaataaccaaaccttaaaagcaagt |
9010472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 11197895 - 11198014
Alignment:
| Q |
12 |
atgaatgcaaatgaagtaaagaattcacaatcactcttatccttgtttagacataaacttatgttattctaagaacatgatttcatgctcaaataaccaa |
111 |
Q |
| |
|
||||||||||| |||| ||||| | ||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
11197895 |
atgaatgcaaaagaagcaaagatcttacaatcactcttatccttgtttagacatagacttatgttattctactaacatggtttcatgctcaaataaccaa |
11197994 |
T |
|
| Q |
112 |
accttaaaagcaagtggttg |
131 |
Q |
| |
|
| | ||||||||||| |||| |
|
|
| T |
11197995 |
atcgtaaaagcaagtagttg |
11198014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 405 - 444
Target Start/End: Original strand, 23950530 - 23950569
Alignment:
| Q |
405 |
agaaaaggtgttaattgttattatctaaggtttctaaaaa |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23950530 |
agaaaaggtgttaattgttattatctaaggtttctaaaaa |
23950569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 23950663 - 23950724
Alignment:
| Q |
478 |
agggattcaatcgtaagtctcaacttcacaaaatacatgaa-tcttcaagttgggattctaa |
538 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| || || | |||||||||||||||||| |
|
|
| T |
23950663 |
agggattcaatcgtaagtctcaactccataaaatagatcaatttttcaagttgggattctaa |
23950724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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