View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14403_low_11 (Length: 401)
Name: NF14403_low_11
Description: NF14403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14403_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 39780732 - 39780487
Alignment:
| Q |
11 |
tagattattctctaataaataaaataaaatgttcaaatatatgtaacgcgtttcttaaagacacaagcatactttacaaactggaagtaaatttcgttta |
110 |
Q |
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| T |
39780732 |
tagattattttctaataaataaaataaaatgttcaaatatatgtaacgcgtttcttaaa-acacaagcatactttacaaactggaagtaaatttcgttta |
39780634 |
T |
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| Q |
111 |
aaattgtatgattgcggacaaaagtgctggaaggaaggaccaccaaataaacatgacaaaaggaagctccatgaataaactaaaaagagtaaaatcctat |
210 |
Q |
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| T |
39780633 |
aaattgtatgattggggacaaaagtgctggaaggaaggaccaccaaataaacatgacaaaaggaagctccatgaataaactaaaaagagtaaaatcctat |
39780534 |
T |
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| Q |
211 |
tttggttcaaaaatgtgagagaagacatagttataattcatgaatca |
257 |
Q |
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| T |
39780533 |
tttggttcaaaaatgtgtgagaagacatagttataattcatgaatca |
39780487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 39791749 - 39791652
Alignment:
| Q |
147 |
ggaccaccaaataaacatgacaaaaggaagctccatgaataaacta-aaaagagtaa-aatcctattttggttcaaaaatgtgagagaagacatagtt |
242 |
Q |
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| T |
39791749 |
ggaccaccaaataaacatgacagaaagaagctccatgaataaactaaaaaagagtaacaatcctgttttggtccaaaaatgtgtgagaagacatagtt |
39791652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 39791798 - 39791751
Alignment:
| Q |
77 |
gcatactttacaaactggaagtaaatttcgtttaaaattgtatgattg |
124 |
Q |
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| T |
39791798 |
gcatacttttcaaactggaagtaaatttcatttaaaattgtatgattg |
39791751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 39795819 - 39795769
Alignment:
| Q |
139 |
ggaaggaaggaccaccaaataaacatgacaaaaggaagctccatgaataaa |
189 |
Q |
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|||||||||||||| | || |||||||||||||||||||||||| |||||| |
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| T |
39795819 |
ggaaggaaggaccagctaagaaacatgacaaaaggaagctccattaataaa |
39795769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 358
Target Start/End: Complemental strand, 39791515 - 39791468
Alignment:
| Q |
311 |
catttgatgattcaaataactaacgaaaaagacatttgaaatacattt |
358 |
Q |
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| T |
39791515 |
catttgataattaaaataactaactaaaaaaacatttgaaatacattt |
39791468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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