View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14403_low_16 (Length: 283)
Name: NF14403_low_16
Description: NF14403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14403_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 11156417 - 11156684
Alignment:
| Q |
1 |
tgtttctcgatttcaggtgctcatacctttggaagagctcattgcgcacaatttgttggtcgatcgtacaacttcagcagtactggaagtccggatccaa |
100 |
Q |
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| T |
11156417 |
tgtttctcgttttcaggtgctcatacgtttggaagagctcattgcgcacaatttgttggtcgattgtacaacttcagcagtactggaagtccggatccaa |
11156516 |
T |
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| Q |
101 |
ctcttaacacaacttacttacaacaattgcgcacaatatgtcccaatggtggacctggcacgaaccttaccaattttgatccaacgactcctgataaatt |
200 |
Q |
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| T |
11156517 |
ctcttaacacaacttacttacaacaattgcgcacaatatgtcccaatggtggacctggcacgaaccttaccaatttcgatccaacgactcctgataaatt |
11156616 |
T |
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| Q |
201 |
tgacaagaactattactccaatcttcaagtgaaaaagggcttgctccaaagtgttcaagagttgttct |
268 |
Q |
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| T |
11156617 |
tgacaagaactattactccaatcttcaagtgaaaaagggcttgctccaaagtgatcaagagttgttct |
11156684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 11149749 - 11150016
Alignment:
| Q |
1 |
tgtttctcgatttcaggtgctcatacctttggaagagctcattgcgcacaatttgttggtcgatcgtacaacttcagcagtactggaagtccggatccaa |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| | ||||||| | |||| ||||||||||| | |||| |||||||||||||||| |
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| T |
11149749 |
tgtttctcgatttcaggtgctcatacatttggaagagctcattgctctttatttgttagccgattgtacaacttcaacggtacaggaagtccggatccaa |
11149848 |
T |
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| Q |
101 |
ctcttaacacaacttacttacaacaattgcgcacaatatgtcccaatggtggacctggcacgaaccttaccaattttgatccaacgactcctgataaatt |
200 |
Q |
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| T |
11149849 |
ctcttaacacaacttacttacaacaattgcgcacaatatgtcccaatggtggacctggcacgaaccttaccaatttcgatccaacgactcctgataaatt |
11149948 |
T |
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| Q |
201 |
tgacaagaactattactccaatcttcaagtgaaaaagggcttgctccaaagtgttcaagagttgttct |
268 |
Q |
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| T |
11149949 |
tgacaagaactattactctaatcttcaagtgaaaaagggtttgctccaaagtgatcaagagttgttct |
11150016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 11145793 - 11146047
Alignment:
| Q |
14 |
caggtgctcatacctttggaagagctcattgcgcacaatttgttggtcgatcgtacaacttcagcagtactggaagtccggatccaactcttaacacaac |
113 |
Q |
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| T |
11145793 |
caggtgctcatacatttggaagagctcattgctctttatttgttagtcgattgtacaacttcagcaatacgggaagtcccgatccaactcttaacgcaac |
11145892 |
T |
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| Q |
114 |
ttacttacaacaattgcgcacaatatgtcccaatggtggacctggcacgaaccttaccaattttgatccaacgactcctgataaatttgacaagaactat |
213 |
Q |
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| T |
11145893 |
ttacttacaacaattgcgcaatatatgtcccaatggtggacctggaactccccttgcaagttttgatccaactactcctgataaatttgacaagaactat |
11145992 |
T |
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| Q |
214 |
tactccaatcttcaagtgaaaaagggcttgctccaaagtgttcaagagttgttct |
268 |
Q |
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||||| ||||||||||||||||| || ||||| ||||||| |||||||||||||| |
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| T |
11145993 |
tactctaatcttcaagtgaaaaaaggtttgcttcaaagtgatcaagagttgttct |
11146047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 67 - 245
Target Start/End: Original strand, 11137541 - 11137719
Alignment:
| Q |
67 |
tacaacttcagcagtactggaagtccggatccaactcttaacacaacttacttacaacaattgcgcacaatatgtcccaatggtggacctggcacgaacc |
166 |
Q |
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||||||||||||||||| |||| || |||||||||||||| |||||||| |||||| |||| || | ||||||||| ||||||||||| | |||| |
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| T |
11137541 |
tacaacttcagcagtacaggaaaacctgatccaactcttaatacaacttatttacaagaattacgtaaaatatgtcctaatggtggaccaccaaataacc |
11137640 |
T |
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| Q |
167 |
ttaccaattttgatccaacgactcctgataaatttgacaagaactattactccaatcttcaagtgaaaaagggcttgct |
245 |
Q |
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| T |
11137641 |
tcgccaattttgacccaacgactcctgataaatttgacaagaactactactccaatcttcagggtaaaaagggtttgct |
11137719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 67 - 230
Target Start/End: Original strand, 11178824 - 11178987
Alignment:
| Q |
67 |
tacaacttcagcagtactggaagtccggatccaactcttaacacaacttacttacaacaattgcgcacaatatgtcccaatggtggacctggcacgaacc |
166 |
Q |
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||||| ||||||| ||||||| ||| ||| |||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| ||||||| |
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| T |
11178824 |
tacaatttcagcaacactggaaatcccgattcaacccttaacacaacttacttgcaaacattgcaagcaatatgtcccaatggtggacctggtacgaacc |
11178923 |
T |
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| Q |
167 |
ttaccaattttgatccaacgactcctgataaatttgacaagaactattactccaatcttcaagt |
230 |
Q |
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| ||| |||| || |||||||| ||||||| ||||||| ||||| ||||||||||| ||||| |
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| T |
11178924 |
taaccgatttggacccaacgacacctgatacatttgactccaactactactccaatctccaagt |
11178987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 11172722 - 11172813
Alignment:
| Q |
67 |
tacaacttcagcagtactggaagtccggatccaactcttaacacaacttacttacaacaattgcgcacaatatgtcccaatggtggacctgg |
158 |
Q |
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||||| ||||||| |||||||| ||| ||||||||||| |||||||| ||||||||| |||| | || ||||||||||||||||||||||| |
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| T |
11172722 |
tacaatttcagcaatactggaaatcccgatccaactctcaacacaacctacttacaaacattgagaactatatgtcccaatggtggacctgg |
11172813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 268
Target Start/End: Original strand, 11119106 - 11119203
Alignment:
| Q |
171 |
caattttgatccaacgactcctgataaatttgacaagaactattactccaatcttcaagtgaaaaagggcttgctccaaagtgttcaagagttgttct |
268 |
Q |
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||||||||||||||| ||||| |||||||| ||||||||||| ||| ||||||||||| |||||||| ||||| ||||||| ||||| ||||||| |
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| T |
11119106 |
caattttgatccaacaactcccgataaattcgacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttct |
11119203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 11111336 - 11111417
Alignment:
| Q |
172 |
aattttgatccaacgactcctgataaatttgacaagaactattactccaatcttcaagtgaaaaagggcttgctccaaagtg |
253 |
Q |
| |
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||||| || |||||||||||||||| ||| |||||||||| ||| ||||||||||| |||||||| ||||| ||||||| |
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| T |
11111336 |
aatttcgacccaacgactcctgatacattggacaagaacttctacaacaatcttcaaggtaaaaagggtttgcttcaaagtg |
11111417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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