View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14403_low_17 (Length: 272)

Name: NF14403_low_17
Description: NF14403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14403_low_17
NF14403_low_17
[»] chr3 (1 HSPs)
chr3 (1-254)||(9171739-9171992)
[»] chr1 (21 HSPs)
chr1 (1-257)||(9257120-9257380)
chr1 (1-257)||(9300330-9300586)
chr1 (1-257)||(9466349-9466605)
chr1 (1-259)||(8962540-8962798)
chr1 (1-233)||(8939613-8939845)
chr1 (1-257)||(9364633-9364889)
chr1 (1-233)||(8927187-8927422)
chr1 (1-257)||(9242155-9242411)
chr1 (17-257)||(9337790-9338027)
chr1 (22-158)||(9236122-9236258)
chr1 (37-156)||(9069627-9069746)
chr1 (17-156)||(9125095-9125234)
chr1 (1-158)||(9377954-9378111)
chr1 (37-126)||(9085953-9086042)
chr1 (46-157)||(8978916-8979027)
chr1 (25-157)||(9437484-9437616)
chr1 (37-156)||(8861517-8861636)
chr1 (43-157)||(9420401-9420515)
chr1 (17-71)||(11026463-11026517)
chr1 (19-95)||(10906922-10906998)
chr1 (19-95)||(10993009-10993085)
[»] chr6 (1 HSPs)
chr6 (1-257)||(15910011-15910264)
[»] scaffold0690 (2 HSPs)
scaffold0690 (1-257)||(1842-2095)
scaffold0690 (139-229)||(4979-5069)
[»] chr7 (1 HSPs)
chr7 (88-156)||(31541037-31541105)


Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 9171739 - 9171992
Alignment:
Q  1 aaaaatcaaagtactatatcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9171739 aaaaatcaaagtactatatcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtctcttataagt 9171838  T
Q  101 ctgatatatatagctatggtatgttgctattggaaattgttggaggaagaaagaatacaaacacaaccacaaatgaagaaaattttcaagttctgtatcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9171839 ctgatatatatagctatggtatgttgctattggaaattgttggaggaagaaagaatacaaacacaaccacaaatgaagaaaattttcaagttctgtatcc 9171938  T
Q  201 agattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatga 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9171939 agattggatccacagtttgcttgaaggaggagaaatacaaatcccaatagatga 9171992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 9257380 - 9257120
Alignment:
Q  1 aaaaatcaaagtactatatcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttctta----t 96  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||    |    
T  9257380 aaaaatcaaagtactatatctatgactgcagcgagaggaacattaggatacatggcacccgaagttttttctagaaactttggtaatgtctcttaattat 9257281  T
Q  97 aagtctgatatatatagctatggtatgttgctattggaaattgttggaggaagaaagaatacaaacacaaccacaaatgaagaaaattttcaagttctgt 196  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||| |    
T  9257280 aagtctgatatatatagctatggtatattgctattggaaattgttggaggaagaaagaatacaaatccaaccacaaatgaagaaaactttcaagttctat 9257181  T
Q  197 atccagattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatgaaga 257  Q
    ||||||||||||||||| |||||||| |||||| ||||||||| ||| |||||||||||||    
T  9257180 atccagattggatccacggtttgcttaaaggagaagaaatacatatcgctatagatgaaga 9257120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 9300330 - 9300586
Alignment:
Q  1 aaaaatcaaagtactatatcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagt 100  Q
    |||||||||||||||||||| ||||| || |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  9300330 aaaaatcaaagtactatatctatgaccgcggccaaaggaacattaggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagt 9300429  T
Q  101 ctgatatatatagctatggtatgttgctattggaaattgttggaggaagaaagaatacaaacacaaccacaaatgaagaaaattttcaagttctgtatcc 200  Q
    | ||||||||||| ||||| |||||| |  |||| || ||||| ||||| |||||| | ||||||||||||| ||||| || |   |||||| | |||||    
T  9300430 ccgatatatatagttatggcatgttgttgctggagatggttgggggaaggaagaattcgaacacaaccacaagtgaaggaagtccacaagttttatatcc 9300529  T
Q  201 agattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatgaaga 257  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||    
T  9300530 agattggatccacagtttagttgaaggaggagacatacaaatccctatagatgaaga 9300586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 9466605 - 9466349
Alignment:
Q  1 aaaaatcaaagtactatatcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagt 100  Q
    ||||||| ||||||  | || ||||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||| || |||||||| || |||||||    
T  9466605 aaaaatcgaagtacagtgtctatgaccgcagccaaaggaacgttaggctacatggcacccgaagttttttctagaaacttcgggaatgtctcatataagt 9466506  T
Q  101 ctgatatatatagctatggtatgttgctattggaaattgttggaggaagaaagaatacaaacacaaccacaaatgaagaaaattttcaagttctgtatcc 200  Q
    ||||||||||||| |||||||||||| | ||||| || |||| ||||||||||||||||||||||||||||  |||||||||||| |||||||| |||||    
T  9466505 ctgatatatatagttatggtatgttgttgttggagatggttgcaggaagaaagaatacaaacacaaccacaggtgaagaaaatttacaagttctatatcc 9466406  T
Q  201 agattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatgaaga 257  Q
    |||||||||||||  |||||||||||| ||||| |||||||||||||| || |||||    
T  9466405 agattggatccacgatttgcttgaagggggagacatacaaatccctattgacgaaga 9466349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 8962540 - 8962798
Alignment:
Q  1 aaaaatcaaagtactatatcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagt 100  Q
    |||||||||| || | |||| |||||||| || || ||||||||||||||||||||||| ||||| |||||| |||| ||||||||||| |||||||| |    
T  8962540 aaaaatcaaactattgtatcgatgactgcggctaggggaacattaggatacatggcacctgaagtattttctcgaaactttgggaatgtctcttataaat 8962639  T
Q  101 ctgatatatatagctatggtatgttgctattggaaattgttggaggaagaaagaatacaaacacaaccacaaatgaagaaaattttcaagttctgtatcc 200  Q
    |||||||||| |||||||| ||||||||  |||| || || ||||||||||||||||| || |||  |||| |||||||||||||||||||| |||||||    
T  8962640 ctgatatatacagctatggaatgttgctgctggagatggtcggaggaagaaagaatactaagacagtcacagatgaagaaaattttcaagttttgtatcc 8962739  T
Q  201 agattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatgaagatg 259  Q
    ||||||||||||| ||||| ||||||| ||||| ||||| |||||||| ||||||||||    
T  8962740 agattggatccacggtttgtttgaagggggagatatacatatccctattgatgaagatg 8962798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 8939613 - 8939845
Alignment:
Q  1 aaaaatcaaagtactatatcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagt 100  Q
    ||||||||||||||  |||||||||| |||||||| ||||| ||||| ||||||||||| |||||||||||| |||| ||||||||||| ||||||||||    
T  8939613 aaaaatcaaagtacagtatcaatgaccgcagccaggggaactttagggtacatggcacctgaagttttttctcgaaactttgggaatgtctcttataagt 8939712  T
Q  101 ctgatatatatagctatggtatgttgctattggaaattgttggaggaagaaagaatacaaacacaaccacaaatgaagaaaattttcaagttctgtatcc 200  Q
    |||||||||| ||||| |||||||||||  |||| || |||||||||||||||||||| || |||  ||||  ||||||||||||||||||  |||||||    
T  8939713 ctgatatatacagctacggtatgttgctgctggagatggttggaggaagaaagaatactaagacagtcacaggtgaagaaaattttcaagtattgtatcc 8939812  T
Q  201 agattggatccacagtttgcttgaaggaggaga 233  Q
    ||||||||||||  ||||  ||||||| |||||    
T  8939813 agattggatccatggtttatttgaaggtggaga 8939845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 9364633 - 9364889
Alignment:
Q  1 aaaaatcaaagtactatatcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagt 100  Q
    |||||||||||||   |||| ||||||||||| |  ||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||||| ||||||||||    
T  9364633 aaaaatcaaagtatcgtatccatgactgcagctaagggaacattaggctacatggcacctgaagttttttcaagaaactttggtaatgtctcttataagt 9364732  T
Q  101 ctgatatatatagctatggtatgttgctattggaaattgttggaggaagaaagaatacaaacacaaccacaaatgaagaaaattttcaagttctgtatcc 200  Q
    |||||||||| || || ||||||||  | |||||||| ||||||||||||||||||||||| ||||  |     ||||||||| | ||||||  ||||||    
T  9364733 ctgatatatacagttacggtatgttattgttggaaatggttggaggaagaaagaatacaaaaacaattagtggcgaagaaaatatacaagttgagtatcc 9364832  T
Q  201 agattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatgaaga 257  Q
    ||| |||||||||| |||||||||||||||||| ||||| |||||||| ||||||||    
T  9364833 agactggatccacaatttgcttgaaggaggagatatacatatccctattgatgaaga 9364889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 8927187 - 8927422
Alignment:
Q  1 aaaaatcaaagtactatatcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagt 100  Q
    |||||||| || ||| |||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||| ||||||||||| ||||||||||    
T  8927187 aaaaatcatagcactgtatcgatgactgcagccaggggaacattaggttacatggcacctgaagttttttctcgaaactttgggaatgtctcttataagt 8927286  T
Q  101 ctgatatatatagctatggtatgttgctattggaaattgttggaggaagaaagaatacaaacacaaccacaaat---gaagaaaattttcaagttctgta 197  Q
    |||||||||| ||||| ||||||||| |  | || || |||||||||||||||||||| || ||||| ||   |   ||||||||||| |||||||||||    
T  8927287 ctgatatatacagctacggtatgttgttgctagagatggttggaggaagaaagaatactaaaacaactactggtggcgaagaaaatttccaagttctgta 8927386  T
Q  198 tccagattggatccacagtttgcttgaaggaggaga 233  Q
    |||||||||||||||  |||| |||||||| |||||    
T  8927387 tccagattggatccatggtttacttgaaggtggaga 8927422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 9242411 - 9242155
Alignment:
Q  1 aaaaatcaaagtactatatcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagt 100  Q
    ||||||||||||| | |||| |||||||| || |  |||||| |||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  9242411 aaaaatcaaagtattgtatccatgactgcggctaagggaacagtaggctacatggcacctgaagttttttctagaaattttggaaatgtctcttataagt 9242312  T
Q  101 ctgatatatatagctatggtatgttgctattggaaattgttggaggaagaaagaatacaaacacaaccacaaatgaagaaaattttcaagttctgtatcc 200  Q
    | ||| |||| || || ||||||||  | ||||| || ||||||||||||||||||||||| |||||      |||||||||| | ||| ||  ||||||    
T  9242311 ccgatgtatacagttacggtatgttattgttggagatggttggaggaagaaagaatacaaaaacaacaggtggtgaagaaaatatacaaattgagtatcc 9242212  T
Q  201 agattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatgaaga 257  Q
    ||| |||||||||| |||||||||||||||||| |||||||||||||| ||||||||    
T  9242211 agactggatccacaatttgcttgaaggaggagatatacaaatccctattgatgaaga 9242155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 9337790 - 9338027
Alignment:
Q  17 tatcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagtctgatatatatagcta 116  Q
    |||| ||||||||||| |  ||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||||| |||||||||||||||||||| || ||    
T  9337790 tatccatgactgcagctaagggaacattaggctacatggcacctgaagttttttcaagaaactttggtaatgtctcttataagtctgatatatacagtta 9337889  T
Q  117 tggtatgttgctattggaaattgttggaggaagaaagaatacaaacacaaccacaaatgaagaaaattttcaagttctgtatccagattggatccacagt 216  Q
     ||||||||  | |||||||| ||||||||||||||||||||||| ||||  |     ||||||||| | ||||||  ||||||||| |||||||||| |    
T  9337890 cggtatgttattgttggaaatggttggaggaagaaagaatacaaaaacaattagtggcgaagaaaatatacaagttgagtatccagactggatccacaat 9337989  T
Q  217 ttgcttgaaggaggagaaatacaaatccctatagatgaaga 257  Q
    ||||||||   |||||| |||||||||||||| ||||||||    
T  9337990 ttgcttga---aggagagatacaaatccctattgatgaaga 9338027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 9236258 - 9236122
Alignment:
Q  22 atgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagtctgatatatatagctatggta 121  Q
    ||||||||||| |||||||| || |||||||| ||||| |||||||| || ||||| || || ||||||||||||||||||||||| |||||||| ||||    
T  9236258 atgactgcagcgagaggaaccttgggatacattgcacctgaagttttctcgagaaacttcggaaatgtttcttataagtctgatatttatagctacggta 9236159  T
Q  122 tgttgctattggaaattgttggaggaagaaagaatac 158  Q
    ||||| |  | || || ||||| ||||||||||||||    
T  9236158 tgttgttgcttgagatggttggtggaagaaagaatac 9236122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 156
Target Start/End: Complemental strand, 9069746 - 9069627
Alignment:
Q  37 ggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagtctgatatatatagctatggtatgttgctattggaaa 136  Q
    ||||| || ||||| ||||||||||||||  | ||| |||||||||| |||||||||  ||||||||||||||| || ||||| |||||| |  | ||||    
T  9069746 ggaaccttgggatatatggcacccgaagtagtgtctcgaaattttggaaatgtttctcttaagtctgatatatacagttatggaatgttgttgctagaaa 9069647  T
Q  137 ttgttggaggaagaaagaat 156  Q
    | ||||||||||||||||||    
T  9069646 tggttggaggaagaaagaat 9069627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 9125234 - 9125095
Alignment:
Q  17 tatcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagtctgatatatatagcta 116  Q
    |||| |||||||| || |||||||| || ||||| |||||||| |||||||| ||  |||||||||| |||||||||  |||||||||||| ||||| ||    
T  9125234 tatccatgactgcggctagaggaaccttgggatatatggcacctgaagttttgtcacgaaattttggaaatgtttctcgtaagtctgatatttatagtta 9125135  T
Q  117 tggtatgttgctattggaaattgttggaggaagaaagaat 156  Q
    ||| |||||| |  ||||| | ||||||||| | ||||||    
T  9125134 tgggatgttgttgctggaattggttggaggacgcaagaat 9125095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 9377954 - 9378111
Alignment:
Q  1 aaaaatcaaagtactatatcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagt 100  Q
    ||||||||||||||  | || || || ||||| ||||||||||| || ||||| ||||| |||||||| || ||||| || || ||||||||||| ||||    
T  9377954 aaaaatcaaagtacggtgtctataaccgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagt 9378053  T
Q  101 ctgatatatatagctatggtatgttgctattggaaattgttggaggaagaaagaatac 158  Q
    ||||||| |||||||| || || ||| |  | || || |||||||| |||||||||||    
T  9378054 ctgatatttatagctacggaatattgttgctagagatggttggaggtagaaagaatac 9378111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 9086042 - 9085953
Alignment:
Q  37 ggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagtctgatatatatagctatggtatgttg 126  Q
    ||||| || ||||| ||||| || |||||||| ||  ||||||||||||||||||||  |||||||||||| ||||| ||||| ||||||    
T  9086042 ggaaccttgggatatatggcgcctgaagttttgtcacgaaattttgggaatgtttctcttaagtctgatatttatagttatgggatgttg 9085953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 8979027 - 8978916
Alignment:
Q  46 ggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagtctgatatatatagctatggtatgttgctattggaaattgttggag 145  Q
    ||||| |||||||| |||||| | || ||||||||||| ||||| |||  ||| |||||||| ||||||||||| |||||| |  | ||||| |||| ||    
T  8979027 ggatatatggcacctgaagttctgtcaagaaattttggtaatgtgtctcttaaatctgatatttatagctatggaatgttgttgctagaaatggttgcag 8978928  T
Q  146 gaagaaagaata 157  Q
    |||| |||||||    
T  8978927 gaaggaagaata 8978916  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 157
Target Start/End: Complemental strand, 9437616 - 9437484
Alignment:
Q  25 actgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagtctgatatatatagctatggtatgt 124  Q
    ||||| || ||||| || ||||| ||||| ||||| ||||| ||||| || || ||||| ||||| || |||||  |||| |||||||| ||||| ||||    
T  9437616 actgccgcaagagggactttaggttacattgcacctgaagtgttttcgaggaactttggaaatgtatcgtataaagctgacatatatagttatgggatgt 9437517  T
Q  125 tgctattggaaattgttggaggaagaaagaata 157  Q
    | ||  | ||||| |||||||||||||| ||||    
T  9437516 tactgcttgaaatggttggaggaagaaaaaata 9437484  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 156
Target Start/End: Complemental strand, 8861636 - 8861517
Alignment:
Q  37 ggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagtctgatatatatagctatggtatgttgctattggaaa 136  Q
    ||||| || ||||||||||| || |||||| | || ||||||||||||||||| |||  |||||| ||||| || || || || |||||| |  | ||||    
T  8861636 ggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtgtctcttaagtcagatatttacagttacggaatgttgttgctagaaa 8861537  T
Q  137 ttgttggaggaagaaagaat 156  Q
    | |||||||| |||||||||    
T  8861536 tggttggagggagaaagaat 8861517  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 157
Target Start/End: Complemental strand, 9420515 - 9420401
Alignment:
Q  43 ttaggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagtctgatatatatagctatggtatgttgctattggaaattgttg 142  Q
    ||||| ||||| ||||| ||||| ||||| || || ||||| ||||| || |||||  |||| |||||||| ||||| ||||| ||  | ||||| ||||    
T  9420515 ttaggttacattgcacctgaagtgttttcgaggaactttggaaatgtatcgtataaagctgacatatatagttatgggatgttacttcttgaaatggttg 9420416  T
Q  143 gaggaagaaagaata 157  Q
    |||||||||| ||||    
T  9420415 gaggaagaaaaaata 9420401  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 11026463 - 11026517
Alignment:
Q  17 tatcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttc 71  Q
    |||||||||||||||| ||||||||||| || ||||| || || |||||||||||    
T  11026463 tatcaatgactgcagctagaggaacattggggtacattgctccagaagttttttc 11026517  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 10906922 - 10906998
Alignment:
Q  19 tcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttctta 95  Q
    |||||||| ||||| ||||||||||| || ||||| || || ||||||||||| || || ||||| ||||| |||||    
T  10906922 tcaatgaccgcagctagaggaacattggggtacattgctccagaagttttttcaaggaactttggaaatgtgtctta 10906998  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 10993009 - 10993085
Alignment:
Q  19 tcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttctta 95  Q
    |||||||| ||||| ||||||||||| || ||||| || || ||||||||||| || || ||||| ||||| |||||    
T  10993009 tcaatgaccgcagctagaggaacattggggtacattgctccagaagttttttcaaggaactttggaaatgtgtctta 10993085  T

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Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 15910264 - 15910011
Alignment:
Q  1 aaaaatcaaagtactatatcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagt 100  Q
    ||||||||||||| | |||| ||||||| ||| |  ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  15910264 aaaaatcaaagtaatgtatccatgactgtagctaagggaacattaggctacatggcacctgaagttttttctagaaattttggaaatgtctcttataagt 15910165  T
Q  101 ctgatatatatagctatggtatgttgctattggaaattgttggaggaagaaagaatacaaacacaaccacaaatgaagaaaattttcaagttctgtatcc 200  Q
    | |||||||| || || ||||||||  | ||||| || ||||||||||||||||||||||| ||||| |    ||| |||||  | ||||||  ||||||    
T  15910164 ccgatatatacagttacggtatgttattgttggagatggttggaggaagaaagaatacaaaaacaacaagtggtgatgaaaacatacaagttgagtatcc 15910065  T
Q  201 agattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatgaaga 257  Q
    ||| |||||||||| |||| ||||   |||||| |||||||||||||| ||||||||    
T  15910064 agactggatccacaatttgtttga---aggagatatacaaatccctattgatgaaga 15910011  T

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Target: scaffold0690 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 1842 - 2095
Alignment:
Q  1 aaaaatcaaagtactatatcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtttcttataagt 100  Q
    ||||||||||||| | |||| |||||| |||| |  ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  1842 aaaaatcaaagtaatgtatccatgactacagctaagggaacattaggctacatggcacctgaagttttttctagaaattttggaaatgtctcttataagt 1941  T
Q  101 ctgatatatatagctatggtatgttgctattggaaattgttggaggaagaaagaatacaaacacaaccacaaatgaagaaaattttcaagttctgtatcc 200  Q
    | |||||||| || || ||||||||  | ||||| || |||||||||||||||||||| || ||||| |    ||| |||||  | ||||||  ||||||    
T  1942 ccgatatatacagttacggtatgttattgttggagatggttggaggaagaaagaatacgaaaacaacaagtggtgatgaaaacatacaagttgagtatcc 2041  T
Q  201 agattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatgaaga 257  Q
    ||| |||||||||| |||| ||||   |||||| |||||||||||||| ||||||||    
T  2042 agactggatccacaatttgtttga---aggagatatacaaatccctattgatgaaga 2095  T

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Target: scaffold0690; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 4979 - 5069
Alignment:
Q  139 gttggaggaagaaagaatacaaacacaaccacaaatgaagaaaattttcaagttctgtatccagattggatccacagtttgcttgaaggag 229  Q
    ||||||||||||||||||||||| |||| |     |||||||||| | ||||||  ||||||||| |||||||||| ||||||||||||||    
T  4979 gttggaggaagaaagaatacaaaaacaaacggtggtgaagaaaatatacaagttgagtatccagactggatccacaatttgcttgaaggag 5069  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 31541105 - 31541037
Alignment:
Q  88 gtttcttataagtctgatatatatagctatggtatgttgctattggaaattgttggaggaagaaagaat 156  Q
    |||||| ||||||||||| ||||||| |||||||||||  |  | ||||| ||||| ||||||||||||    
T  31541105 gtttctcataagtctgatgtatatagttatggtatgttaattctagaaatggttgggggaagaaagaat 31541037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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