View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14403_low_18 (Length: 259)
Name: NF14403_low_18
Description: NF14403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14403_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 30619971 - 30620199
Alignment:
| Q |
20 |
tgcccctctcttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatgccttcaatcaattcaaaactctaaaactcaccatcatg |
119 |
Q |
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| T |
30619971 |
tgcccctctcttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatgccttcaatcaattcaaaactctaaa-ctcaccatcatg |
30620069 |
T |
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| Q |
120 |
catctcaaaaatagaaaggctaagttcttttttctttaaaatagcatagaaaatacttataggtttttattcatacaatgag----aataaataaataaa |
215 |
Q |
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| T |
30620070 |
catctcaaaaatagaaaggctaagttcttttttctttaaaatagcaaagaaaatacttataggtttttattgatacaataagaataaataaataaataaa |
30620169 |
T |
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| Q |
216 |
tgtttttgatgttaaaatagagaaccttgt |
245 |
Q |
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| T |
30620170 |
tgtttttgatgttaaaatagagaaccttgt |
30620199 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 41965262 - 41965314
Alignment:
| Q |
29 |
cttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatg |
81 |
Q |
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| T |
41965262 |
cttctacaagtattatcccaaaggtgagcttcataccttccggtccatctatg |
41965314 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 13683511 - 13683569
Alignment:
| Q |
26 |
tctcttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatgcct |
84 |
Q |
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| T |
13683511 |
tctcttctacagctgttatcccatagatgggcttcatatcttcctgtccatctatgcct |
13683569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 7210503 - 7210439
Alignment:
| Q |
20 |
tgcccctctcttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatgcct |
84 |
Q |
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| T |
7210503 |
tgcccttcttttctgcaactattatcccataaatgtgcttcatatctcccagtccatctatgcct |
7210439 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 24563155 - 24563207
Alignment:
| Q |
29 |
cttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatg |
81 |
Q |
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| T |
24563155 |
cttctacagctgttatcccaaaggtgagcttcataccttccagtccatctatg |
24563207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 53235953 - 53236005
Alignment:
| Q |
29 |
cttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatg |
81 |
Q |
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||||| |||||||| ||||| || || |||||||||||||| ||||||||||| |
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| T |
53235953 |
cttctgcaactattgtcccatagatgtgcttcatatctccccgtccatctatg |
53236005 |
T |
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